LOCUS       NZ_CP034758             2495 bp    DNA     circular CON 15-APR-2024
DEFINITION  Enterobacter hormaechei subsp. hoffmannii strain Eh1 plasmid p4,
            complete sequence.
ACCESSION   NZ_CP034758
VERSION     NZ_CP034758.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10654518
            Assembly: GCF_009834325.1
KEYWORDS    RefSeq.
SOURCE      Enterobacter hormaechei subsp. hoffmannii
  ORGANISM  Enterobacter hormaechei subsp. hoffmannii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.
REFERENCE   1  (bases 1 to 2495)
  AUTHORS   Bonomo,R., Fouts,D.E., White,R., Nguyen,K. and Singh,I.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-DEC-2018) Informatics Core Services, JCVI, 9605
            Medical Center Drive, Rockville, MD 20850, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: DEC-2018
            Assembly Method                   :: Unicycler v. 0.4.7
            Assembly Name                     :: GCID_DCEE_0001
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 134.2749x
            Sequencing Technology :: Illumina NextSeq; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009834325.1-RS_2024_04_14
            Annotation Date                   :: 04/14/2024 20:45:10
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,028
            CDSs (total)                      :: 4,920
            Genes (coding)                    :: 4,801
            CDSs (with protein)               :: 4,801
            Genes (RNA)                       :: 108
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 77
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 119
            CDSs (without protein)            :: 119
            Pseudo Genes (ambiguous residues) :: 0 of 119
            Pseudo Genes (frameshifted)       :: 51 of 119
            Pseudo Genes (incomplete)         :: 77 of 119
            Pseudo Genes (internal stop)      :: 18 of 119
            Pseudo Genes (multiple problems)  :: 26 of 119
            Pseudo Genes (short protein)      :: 1 of 119
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP034758.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2495
                     /organism="Enterobacter hormaechei subsp. hoffmannii"
                     /mol_type="genomic DNA"
                     /strain="Eh1"
                     /host="Homo sapiens"
                     /sub_species="hoffmannii"
                     /db_xref="taxon:1812934"
                     /plasmid="p4"
                     /geo_loc_name="USA"
                     /collection_date="2018"
                     /collected_by="Robert Bonomo"
     gene            957..1184
                     /locus_tag="EM861_RS24945"
                     /old_locus_tag="EM861_25425"
     CDS             957..1184
                     /locus_tag="EM861_RS24945"
                     /old_locus_tag="EM861_25425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010615788.1"
                     /GO_component="GO:0005886 - plasma membrane [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgdI/YgdR family lipoprotein"
                     /protein_id="WP_021243043.1"
                     /translation="MKKIFVSVFAAAVALSALTGCTRTSYAIHTNDGRTIVSDGKPKES
                     DSGLLGYTDANGVKQQINKTDVKEVSEIPH"
                     /name="YgdI/YgdR family lipoprotein"
     gene            1550..1735
                     /locus_tag="EM861_RS24950"
                     /old_locus_tag="EM861_25430"
     CDS             1550..1735
                     /locus_tag="EM861_RS24950"
                     /old_locus_tag="EM861_25430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_013772937.1"
                     /translation="MTRQESAALNMAKFIRAQTLLLLERLEQMDLDEAAGCCEHLHDQA
                     EALYAMLNAQIGEENA"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(2026..2244)
                     /locus_tag="EM861_RS24955"
                     /old_locus_tag="EM861_25440"
     CDS             complement(2026..2244)
                     /locus_tag="EM861_RS24955"
                     /old_locus_tag="EM861_25440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001046776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_198129632.1"
                     /translation="MFGFSSGALMTLSDDERHLLVSVVSVWLRRAGGDAGAMMLDAYRQ
                     ILSETEPAVRTVMLEFLESVRIHYISS"
                     /name="hypothetical protein"
     Typing          complement(1783..1870)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="6.86e-39"
     Typing          14..542
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.785"
                     /coverage="88.0"
                     /evalue="0.0"
ORIGIN
        1 atgtgataca gaatatattc cgcttcctcg ctcactgact cgctccgctc ggtcgttcgg
       61 ctgcggcgag cgggacgggc ttacggatgg atcagaaatt tcctgggaga tgccaggaag
      121 atacttaacg aagaaagcat aaggccgcgc caaagccgtt tttccatagg ctccgccccc
      181 ctgacaagca tcacagaatc tgacgctcaa atcagtggtg gcgaaacccg atgcggctta
      241 aagataccag gcgtttcccc ctggtggctc cctcgtgctc ccccgcattc ctgcctttcg
      301 gtttaccggt gtcactccgc tgttatggcc gcggtttctc attccacgcc tgacactcag
      361 ttccgggaag gcagttcgct ccaggatgga ctgtatgcac gaaccccccg ttcagtccga
      421 ccgctgcgcc ttatccggta actatcaact tgagtccaac ccggaaagac acgactaatc
      481 gccattggca acggccattg gcaaacagga tgtgcgagag atgtctcaag agttcttgaa
      541 gtggcggcct tagtgaggct acactgaaag gacaaatttg gtgacatgtc tcgcacaaga
      601 ctgttaccac ggttagggga tctgccagga ttacctaacc ttcgaaaaac cacctgccag
      661 ggtggttttt tcgtttacag ggcaagagat tacgcgcgga aaaaaaggat ctcaagaaga
      721 tcctttataa attagacatc caacctcaca aagaggaata cttaaatcat cttggtatat
      781 gtatcggccg gattacatct catataagcc tcctccccgc ctgacaccac actttgacca
      841 tagcacctcg cgcctaactc gatatacagc ccaccatcaa gcctcttttc acataaaaaa
      901 tgacctatag ttagatggtt agtgaccaaa actgatatgg ataaaaggag ctggctttga
      961 aaaagatttt tgtttcagtg ttcgcagcgg cagttgcgct ttcagccctc accggctgca
     1021 cgcgcacaag ctatgccata cacaccaatg acggtcgcac tattgtcagc gacggcaaac
     1081 ctaaagaatc agactcaggc ctgcttggct atacagacgc gaatggtgtc aaacagcaga
     1141 tcaataaaac cgacgttaaa gaagtctccg aaattccgca ctgagcatct tctccgaaaa
     1201 aggccgctaa tgtggccttt ttctttacct gtggttctcc gccaaaatcc cagcaaattg
     1261 catcaccaaa gctaaaagct ttcagggttg tctaaaaagc acaagacata agaggaagtg
     1321 cggtatttta taatcaagcc cccaagaatt taccataaca tccgttgccc gcaccgcctg
     1381 agacgcgttc agcgcgttcc tgacgaaacc atgacaaaaa ccacaacaaa ccaccccgga
     1441 acccgtcaga aacgcgcctg ttaaatttta acggcatgca tgactatgca ccagaatgac
     1501 gccatgctct tttcacgcaa aaatcatcac cagacgggga aaatcaccag tgaccagaca
     1561 ggaatccgcc gccctcaata tggccaaatt tatccgcgca cagacacttc tcctccttga
     1621 gcggctcgag cagatggatc tggatgaggc tgccggctgc tgtgagcacc tgcacgatca
     1681 ggccgaagcg ctttacgcca tgctgaacgc acagataggc gaggaaaatg cgtgaaaatc
     1741 ggtgaacggg tgcgcaattc agtgcgcggc cgtgaggcga tggcggggtg tcggggcgca
     1801 gccctgacca gggtatttgt gatgccggcg cgtgcgcggt attacaaatg cacatcctgt
     1861 cccggaacgg acaccgggaa acagcaaaaa aaaccgggcg gcacgcccgg aactcaatca
     1921 agttagatta gattactctc actcgtccat aacagcatca tggaacgacg accaccgtcc
     1981 gtgacggccg cctcgtttaa gtatggacag aaatacagaa aatgctcagg acgaaatgta
     2041 atgaatgcga acggattcaa gaaattcgag catgacagtc cttacggccg gttcggtttc
     2101 agacaaaatc tgccggtatg catccagcat catggctccg gcatcccctc cggcacgccg
     2161 tagccagacc gaaacaacgg acacaagcag gtgtcgctca tcatcactaa gagtcatcag
     2221 ggctccggaa gaaaaaccaa acatggctta cctactgtta acggcaacgc agaagaaagg
     2281 tttacagggt agcgggcagg gatgaaaaaa aaaaaattgc agtcaggccg gaacggctgc
     2341 tgaaccggta caggcgggtt ccgggcgcag cgccggacca gtcacggagc actagcggag
     2401 tgtatactgg cttaagatgt agcatggcag taacacatag cattaatgcc acataagaca
     2461 ggcgcagaaa gtgaaagaaa acgcgtcagg agaaa
//
