LOCUS       NZ_CP034139             6924 bp    DNA     circular CON 26-NOV-2023
DEFINITION  Klebsiella quasipneumoniae subsp. similipneumoniae strain G747
            plasmid pG747_6.9Kb, complete sequence.
ACCESSION   NZ_CP034139
VERSION     NZ_CP034139.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05960914
            Assembly: GCF_002187935.3
KEYWORDS    RefSeq.
SOURCE      Klebsiella quasipneumoniae subsp. similipneumoniae
  ORGANISM  Klebsiella quasipneumoniae subsp. similipneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 6924)
  AUTHORS   White,R., Fouts,D. and Nguyen,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Informatics Core Services, JCVI, 9605
            Medical Center Drive, Rockville, MD 20850, USA
REFERENCE   2  (bases 1 to 6924)
  AUTHORS   Fouts,D., Brinkac,L., Sutton,G., Nguyen,K., Venepally,P., Wright,M.,
            Clarissa,I., Olanipekun,G., Medugu,N., Kocmich,N.,
            Rezac-Elgohary,A., Murphy,C., Fey,P. and Obaro,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JUN-2017) Informatics Core Services, JCVI, 9704
            Medical Center Drive, Rockville, MD 20850, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Canu v. 1.7.1
            Assembly Name                     :: G747
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 58.560x
            Sequencing Technology             :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/26/2023 02:41:02
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,871
            CDSs (total)                      :: 5,750
            Genes (coding)                    :: 5,500
            CDSs (with protein)               :: 5,500
            Genes (RNA)                       :: 121
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 250
            CDSs (without protein)            :: 250
            Pseudo Genes (ambiguous residues) :: 0 of 250
            Pseudo Genes (frameshifted)       :: 122 of 250
            Pseudo Genes (incomplete)         :: 139 of 250
            Pseudo Genes (internal stop)      :: 33 of 250
            Pseudo Genes (multiple problems)  :: 42 of 250
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP034139.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..6924
                     /organism="Klebsiella quasipneumoniae subsp.
                     similipneumoniae"
                     /mol_type="genomic DNA"
                     /strain="G747"
                     /isolation_source="Blood"
                     /host="Homo sapiens"
                     /sub_species="similipneumoniae"
                     /db_xref="taxon:1463164"
                     /plasmid="pG747_6.9Kb"
                     /geo_loc_name="Nigeria"
                     /collection_date="2013-02-25"
                     /collected_by="Stephen Obaro"
     gene            complement(736..1410)
                     /locus_tag="BME36_RS29585"
                     /old_locus_tag="BME36_029585"
     CDS             complement(736..1410)
                     /locus_tag="BME36_RS29585"
                     /old_locus_tag="BME36_029585"
                     /inference="COORDINATES: protein motif:HMM:NF025107.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_065806389.1"
                     /translation="MIPNWAPMFSWWVHNGLIRKFNWRNDEIGKPSAKVAALMIYIAIT
                     MKCAEEVGIQEVKITYTRLSEMTGISRQLIREGTAILVKLDMIDVTRIGRNNTYKLISN
                     KERSGWCKIPVRAITSEGGHAITPFEDLKLRRKVELHALKIFIYLASVRDNYTEYSLAS
                     YQTISSAVGITEKDIQRALALLSLVGLITRISSEKADDTKKNQPNRYYLAGYKSFVKRS
                     DW"
                     /name="helix-turn-helix domain-containing protein"
     gene            complement(2284..2888)
                     /locus_tag="BME36_RS29590"
                     /old_locus_tag="BME36_029590"
                     /pseudo=""
     CDS             complement(2284..2888)
                     /locus_tag="BME36_RS29590"
                     /old_locus_tag="BME36_029590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001549957.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA];
                     GO:0000150 - DNA strand exchange activity [Evidence IEA]"
                     /GO_process="GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /name="recombinase family protein"
     gene            2983..5879
                     /locus_tag="BME36_RS29595"
                     /old_locus_tag="BME36_029595"
                     /pseudo=""
     CDS             2983..5879
                     /locus_tag="BME36_RS29595"
                     /old_locus_tag="BME36_029595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020326821.1"
                     /GO_function="GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /GO_process="GO:0006313 - DNA transposition [Evidence IEA]"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="Tn3-like element Tn5403 family transposase"
                     /name="Tn3-like element Tn5403 family transposase"
     gene            complement(6285..6707)
                     /locus_tag="BME36_RS29600"
                     /old_locus_tag="BME36_029600"
     CDS             complement(6285..6707)
                     /locus_tag="BME36_RS29600"
                     /old_locus_tag="BME36_029600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005229777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_025714834.1"
                     /translation="MARVSISEAARLVKVSRPTIYKMINSGKLSYTSVVKHGKAIKVID
                     TSELIRVFGSLDGVIDTVKYDVKSDAESTSINSVGLHDLQHRIALLEAENDGLKGAVKA
                     RDEHIDSLRQAMQLLEHKREPSSPPHSPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            complement(6707..6898)
                     /locus_tag="BME36_RS29605"
                     /old_locus_tag="BME36_029605"
     CDS             complement(6707..6898)
                     /locus_tag="BME36_RS29605"
                     /old_locus_tag="BME36_029605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_023302508.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSRLDELQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     Typing          23..472
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="80.0"
                     /coverage="92.0"
                     /evalue="8.57e-86"
ORIGIN
        1 atgtcagaca gatctctttt ccgcttcctc gctcactcag tcgctacgct cctgccgttc
       61 ggctgcggcg agcggtcgca acgcgcacat aacgacatag agcagacagc tcggagaggg
      121 agaaggcagc acagcggccg tttttccata ggctccgccc ccctgacaag catcacgaaa
      181 tctgacgctc aaatcagtgg tggcgaaacc cgacaggact taaagatacc gggcgtttcc
      241 ccccggtggc tccctcttgc gctttcctgt tcccgccctg cggtttacgt gttgtggtgg
      301 aagccttacc taaatcacca cgtcccgctc cgtttagaca gttcgctcca agctgggctg
      361 tatgcaagaa ccccccgttc agcccgacta ccacgccctt tccggtaact atcacttgag
      421 tccaacccgg agcagacacg acaaatcgcc attggcggta gccactggta acggggtaac
      481 aagatgccta tagattcttt agtcttgatg tttgagccta acaacggcta aacttaaaga
      541 gaaatttggc ggcagcggtc ttgttcaccc tgttaccacg gttaagcagt tccccaactg
      601 acttaacctt cgaaaaaccg ccttgcaggg cggttttttc gttaatgcgt aacgatactc
      661 ttagccaaag agtaacgtca agaatgcatt cctagcttag cgttaaaccc atccctgcct
      721 atgcacacct cgtattcacc agtccgatct tttaacaaag cttttatatc cagcaagata
      781 gtagcgatta ggctgattct ttttagtgtc atcagctttt tcactagaaa tcctagtgat
      841 cagacctacc aatgagagga gtgctaatgc tctctggata tctttttctg taatgccaac
      901 agcactactt atagtctggt aagaagctaa cgaatactct gtgtagttat cacgaacaga
      961 agcaagataa atgaatattt ttagcgcatg cagctctact tttcgcctta gctttaaatc
     1021 ttcaaatggt gtaatagcat ggccaccttc actagttatt gctcttacag gtatcttgca
     1081 ccatccacta cgctctttat tgcttatcag tttataggtg ttgtttcgac caatccgcgt
     1141 aacatcaatc atatccagct taactaaaat agctgtacct tctcttatca gctgccgact
     1201 aatccctgtc atttctgata gccgggtata ggttattttc acttcctgaa tgccaacttc
     1261 ttcagcgcat ttcatggtaa ttgctatgta aatcataaga gcggcaacct ttgctgatgg
     1321 tttgccgatc tcatcgttac gccaattaaa tttccgaata agtccgttat gaacccacca
     1381 agagaacatc ggagcccaat tagggatcat ctcacttcct ccagccaata atgcaaatag
     1441 caacgaagcc tgccaaaaca gctaatgaca acaggaacgg aacgaaccca ctgatgacag
     1501 gggctattga ggtaataaat gaactgataa cggttaaatt ttccataaaa ggtccttcta
     1561 cgaggagtta ttttcaaatt ttatctcgcc aaaggattta catctagaga caatggtttt
     1621 aatttttttt gaaaataaaa aataaaacca atttaatcaa tcacttactt ttagaatcat
     1681 tagtttttag catctaaaaa ttagttcata agatgaaatt tagcgcgata aaagaccatt
     1741 tatcagtcaa aaaacgccca aattgataaa ctattagttc acaaaaaaca aacataaacc
     1801 attgataaat atatgttttt tgtaaggtgt tgttttataa tactattttt ttatcgtcga
     1861 gtaagagcca cagagtcgag ctatttacca taacatccgt tgcccgcacc gcctcagagg
     1921 ccctcagggc gtttctgagg cctccggcct gaaacacaca cctttctgtg cccatatcga
     1981 gaaaaaacgc ccctgatgat tctggcgcga ctgcatggct atgcacggac atacctggcc
     2041 gggattttag cggctaaaat ccgatgaacg ccctgaaagc caccacgaac caccccgata
     2101 acggtgaacg gatgcgcaat ttattgcgtg gccgtgaggc gttgccggca cagccggaaa
     2161 accggttttc agcacgttca ggaatcgggt tcgtcgacgg ccggcaatca cgttatggca
     2221 agtcgccgga cgactcacca cacgattcac ggggtcggtt ccggctgagg gcgaaatgac
     2281 accctaagcg ttagctctgt gtcgttgcac gatgtcagcg acggtattct tgctgatacc
     2341 gagctcgcgt gcgatccagc gatagctgcg tccctcggcc ctcatcgcaa ccaccttagg
     2401 caaaagtcgg tctgattttg gtcgcactcc ggcctgacga ccaagcctct taccacgtgc
     2461 cttcgcaaca gcaaggcctg acttgacccg ctcgctgatg agatcccgct caaactccgc
     2521 aatgccggaa agaaacgtcg ccagcattcg tccatacggc gacgaaagat cgaacgccat
     2581 tccattcatg gctatcacgg aaaccttcca gttctccagt tcacgtagcg tattgagcag
     2641 atcgagcgtc gagcgccccc accgggaaag ctcagtgacc aggattgcat caatttgtct
     2701 ggactgggca agcgccagga ctttctttcg ctcggcccgg tcgagtttag ttcctgaacc
     2761 tgtttcctta aatattccca ccacgtcgta gccggcacag ccggcgaagg ctcgcagatc
     2821 aaattccggc gttcacaaga ctgatccgct gttgaaaccc ggcagtaaat ggcggcacga
     2881 tgtcccaatt gaaccctcct ggatttttgt atcggaacgc cctgatttat atgggctggc
     2941 tgttgtccaa aacagactat acttcaaaag ggacgaattt gtatgtcacg acgccatatt
     3001 ttcaccgaac ggcagcgagc agcgctgttc gatctgccca cggacgaact gtcgctactg
     3061 aagttctaca cgctgggcga tgatgacctg gaaaacatta ggcagcgccg cagaccggaa
     3121 aacaggattg gctttgccct gcaactttgt gccttacgat atccgggccg tgcactggct
     3181 cctggtgaga tgatcccgcg tgaagtcctt tccttcgtcg gtgctcagct tggagttccg
     3241 gctgatgcgc ttctcactta tgccacacgg cgccaaaccc gtcagcagca catggacacg
     3301 ctgcgcgaaa tttacggcta caagaccttc acgggccgtg gtgcccgtga tctgcgggag
     3361 tggactttcg gccaggccga agatgccaga tcaaacgagg atcttgctca tcgttttatt
     3421 gtgcggtgtc gggaaacttc caccattctg cccgcagtat cgacaatcga gcgcttgtgc
     3481 gcggatgctc tggtcgccgc tgagcggcgg attgaaacgc ggattgcgga aaatttaaca
     3541 gcggatgttc gcgatcacat ggacaaactt ctgagtgaaa tgctcgccgg caatatcagt
     3601 cgtttcatct ggcttcgcaa cttcgaggtt ggtaacaact cggctgctgc taaccgtttg
     3661 ctcgacaggc tcgaatttct gcgtaccctg aatatcaatc atagtgcttt ggccagcata
     3721 cctgcccatc gcattgcccg gctgcgtcgg cagggtgaac gctacttcac cgacggtttg
     3781 cgtgacatca cttcggaccg ccgctgggcg atccttgccg tctgtgttgt ggagtgggaa
     3841 gcggcgattg ctgatgccat agtcgaaacc catgacagga tcgtaggaaa aaacggcggg
     3901 aagcgaagcg ccagcatgac gaaacaattt ccggctctaa agccacactc acggatacga
     3961 tccgtacctt caccgcgctg ggagcttcgt tgcttgaggc ccgcagtgac ggaaccccgc
     4021 tggagatggc tgtcgccagt tcggttgcat gggaccggct cgctcaactg gtagcgacag
     4081 ggactcaact cagcaacacg ctagccgatg agcctcttgc atatgtcggg cagggatacc
     4141 atcgctttcg tcgttatgcg ccccgcatgt tgcgctgtct gaagctcgaa gccgcgccgg
     4201 tcgccggacc attggtagca gcagctttgt cgatcggaga gatgaaaggt gttgcatcgc
     4261 cagaaaggcg tttcctgcgg cccagctcca aatggaaccg tcatttacga gctcaggaaa
     4321 aaggagatac ccgtctttgg gaagtggcgg tactctttca cctccgggat gcttttcgtt
     4381 ccggagatgt ctggctcgct cattcgcgcc gctatggtga cctcaagcag gtactggtgc
     4441 cgatgatcgc ggcgcaggaa aatgcaaaac tggccgtgcc ttccaaccca caggattggc
     4501 tggcagacag aaaggcgcga ctcacgatcg ctcttaagcg gctggcccgg gctgcccgta
     4561 acggcactat tccgcacggt agcatagaag atggaacgtt gcggatcgac aggttgacag
     4621 cagacgtgcc ggatggtgcc gaggcactca tactggatct gtatcgccga atgccgtccg
     4681 ttcggattac cgacatgctg cttgaagttg atgcagccct tggtttcaca gatgcgttta
     4741 cccatctgag aaccggggct ccatgtcgcg accggatcgg tctgctcaac gtcctgctcg
     4801 ctgaagggct caatctgggc ctgcgtaaga tggcggaagc tacaaacacg catgattact
     4861 ggcagctctc acgccttgcc cgctggcatg ttgaaagcga agccatgaac caggcattgg
     4921 caattgtggt ggccgcgcag ggtaaactgc cgatgtcacg cgtctggggg atgggcacgt
     4981 cagcatcgag cgatggtcag tttttcccga cagcgcggca tggcgaagcc atgaacatgg
     5041 tcaatgccaa atatggttct gttcccggcc tcaaagcgta tactcacgta agcgaccagt
     5101 tcgcgccatt cgcttgtcag tcgatcccgg cgaccgtgag cgaggcaccg tatattctcg
     5161 atggactact gatgaacgag gtcggtcgcc atgttcgcga acagtatgcc gatacagcag
     5221 gattcaccga ccatttgttc ggagccagta gcctgctcgg ctacaatctc gttctgcgaa
     5281 tcagggatct gccatcgaag cggttgtacg tatttaatcc cgatacgacc cccagggagt
     5341 tacgcaagtt ggtaggtgga aaagcccggg aggatcttat cgttgcgaac tggcctgata
     5401 ttttccgttg tgccgcgacg atgaccgctg gcaaaatcag gcccagccaa ctcctgcgca
     5461 agctcgcttc ttacccacga caaaacaacc ttgcagttgc gcttcgtgaa gttggtcgta
     5521 ttgaacggac ccttttcatt attgagtgga tcctggatac ggacatgcag cggcgtgctc
     5581 agatcggtct taacaaggga gaggcccacc atgcgctcaa aaatgcgctc cgtatcggga
     5641 ggcaggggga aattcgcgat cgcacgacag aggggcagca ctaccgaatc gctgggctca
     5701 atttattgac tgcggtgatc atttactgga ataccgtcca tcttggtcat gccgtcacgg
     5761 agcggcggaa cgaagggttg gatgttcccc ctgaatttct tccccacata tccccattgg
     5821 gctgggcgca cattctactg actggcgaat atctttggcc caaggaaccg aaagcttagg
     5881 gtgtcatttc gccctcagcc ggaaccgacc ccttcaccgg cgattcgaat cgtgaattga
     5941 atcaagagtc accatgaaca aaaaacgccc aaattgatga attgaatcaa gagtcgattc
     6001 atcataacaa catgataata aagcgtgatt cacatatgaa tcgtgggcaa ttcgtaaacg
     6061 attcgccata gagtcgtcca cgacttggat ctgcactttg taacacatca ctgcacatta
     6121 atttttcatt aaccaattgt tttaaataag gaatctgcaa aattttaatt ttgcgtagtg
     6181 tgtgggtatt tttagtcgtg aggagcgttc agagatctgg cgatttttgg gaaggttcag
     6241 gaactcccgg gatggccgga gaggaaaact caagcatggc aggatcagga ttttttccag
     6301 aatttccacc acggggaatg gggtggtgaa gaaggctcgc gcttgtgctc cagaagctgc
     6361 atagcctgac gaagggaatc aatatgctca tctcgagcct taacagcccc tttaagacca
     6421 tcgttttcag cttcaagtag agcgattcta tgttgtaaat catgtaaacc aacgctgtta
     6481 atacttgtag attctgcgtc actttttaca tcatatttta cagtatcgat gacaccatca
     6541 agagaaccaa acactctaat aagctctgaa gtatcaataa ctttaatagc cttcccgtgc
     6601 tttacaacag aggtgtaact taacttccca ctgttaatca tcttgtaaat tgtgggacgg
     6661 ctaaccttaa caagccgtgc cgcttcacta atagacactc tggccatcaa ttaccatcct
     6721 gtaattcatc cagtctcgag gacagtgtac ggaaaagatg ctccgcatca tcgtggagtt
     6781 tctcacaaag gtcggcctca acatcgagat caagctcgtt aagcttctcc agcaggagca
     6841 gagactgatt ctggatgaat ttagccatgt tcagcgctgt tttctgttgt ttcgtcataa
     6901 agggcctcag agcgtcagtg ctca
//
