LOCUS       NZ_CP034134             6927 bp    DNA     circular CON 26-NOV-2023
DEFINITION  Klebsiella quasipneumoniae strain G4584 plasmid pG4584_6.9Kb,
            complete sequence.
ACCESSION   NZ_CP034134
VERSION     NZ_CP034134.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05960932
            Assembly: GCF_002239895.2
KEYWORDS    RefSeq.
SOURCE      Klebsiella quasipneumoniae
  ORGANISM  Klebsiella quasipneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 6927)
  AUTHORS   White,R., Fouts,D. and nguyen,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Informatics Core Services, JCVI, 9605
            Medical Center Drive, Rockville, MD 20850, USA
REFERENCE   2  (bases 1 to 6927)
  AUTHORS   Fouts,D., Brinkac,L., Sutton,G., Nguyen,K., Venepally,P., Wright,M.,
            Clarissa,I., Olanipekun,G., Medugu,N., Kocmich,N.,
            Rezac-Elgohary,A., Murphy,C., Fey,P. and Obaro,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JUN-2017) Informatics Core Services, JCVI, 9704
            Medical Center Drive, Rockville, MD 20850, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.6
            Assembly Name                     :: G4584
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 759.556x
            Sequencing Technology :: Illumina NextSeq and Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/26/2023 02:40:44
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,990
            CDSs (total)                      :: 5,872
            Genes (coding)                    :: 5,658
            CDSs (with protein)               :: 5,658
            Genes (RNA)                       :: 118
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 82
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 214
            CDSs (without protein)            :: 214
            Pseudo Genes (ambiguous residues) :: 0 of 214
            Pseudo Genes (frameshifted)       :: 79 of 214
            Pseudo Genes (incomplete)         :: 144 of 214
            Pseudo Genes (internal stop)      :: 32 of 214
            Pseudo Genes (multiple problems)  :: 39 of 214
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP034134.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..6927
                     /organism="Klebsiella quasipneumoniae"
                     /mol_type="genomic DNA"
                     /strain="G4584"
                     /isolation_source="Blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:1463165"
                     /plasmid="pG4584_6.9Kb"
                     /geo_loc_name="Nigeria"
                     /collection_date="2016-04-15"
                     /collected_by="Stephen Obaro"
     gene            complement(736..1410)
                     /locus_tag="BME54_RS30635"
                     /old_locus_tag="BME54_30635"
     CDS             complement(736..1410)
                     /locus_tag="BME54_RS30635"
                     /old_locus_tag="BME54_30635"
                     /inference="COORDINATES: protein motif:HMM:NF025107.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_065806389.1"
                     /translation="MIPNWAPMFSWWVHNGLIRKFNWRNDEIGKPSAKVAALMIYIAIT
                     MKCAEEVGIQEVKITYTRLSEMTGISRQLIREGTAILVKLDMIDVTRIGRNNTYKLISN
                     KERSGWCKIPVRAITSEGGHAITPFEDLKLRRKVELHALKIFIYLASVRDNYTEYSLAS
                     YQTISSAVGITEKDIQRALALLSLVGLITRISSEKADDTKKNQPNRYYLAGYKSFVKRS
                     DW"
                     /name="helix-turn-helix domain-containing protein"
     gene            complement(2284..2889)
                     /locus_tag="BME54_RS30640"
                     /old_locus_tag="BME54_30640"
     CDS             complement(2284..2889)
                     /locus_tag="BME54_RS30640"
                     /old_locus_tag="BME54_30640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001549957.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA];
                     GO:0000150 - DNA strand exchange activity [Evidence IEA]"
                     /GO_process="GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="WP_000509965.1"
                     /translation="MGHRAAIYCRVSTADQSCERQEFDLRAFAGCAGYDVVGIFKETGS
                     GTKLDRAERKKVLALAQSRQIDAILVTELSRWGRSTLDLLNTLRELENWKVSVIAMNGM
                     AFDLSSPYGRMLATFLSGIAEFERDLISERVKSGLAVAKARGKRLGRQAGVRPKSDRLL
                     PKVVAMRAEGRSYRWIARELGISKNTVADIVQRHRANA"
                     /name="recombinase family protein"
     gene            2984..5881
                     /locus_tag="BME54_RS30645"
                     /old_locus_tag="BME54_30645"
     CDS             2984..5881
                     /locus_tag="BME54_RS30645"
                     /old_locus_tag="BME54_30645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020326821.1"
                     /GO_function="GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /GO_process="GO:0006313 - DNA transposition [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tn3-like element Tn5403 family transposase"
                     /protein_id="WP_001553819.1"
                     /translation="MSRRHIFTERQRAALFDLPTDELSLLKFYTLGDDDLENIRQRRRP
                     ENRIGFALQLCALRYPGRALAPGEMIPREVLSFVGAQLGVPADALLTYATRRQTRQQHM
                     DTLREIYGYKTFTGRGARDLREWTFGQAEDARSNEDLAHRFIVRCRETSTILPAVSTIE
                     RLCADALVAAERRIETRIAENLTADVRDHLDKLLSEMLAGNISRFIWLRNFEVGNNSAA
                     ANRLLDRLEFLRTLNINHSALASIPAHRIARLRRQGERYFTDGLRDITSDRRWAILAVC
                     VVEWEAAIADAIVETHDRIVGKTWREAKRQHDETISGSKATLTDTIRTFTALGASLLEA
                     RSDGTPLEMAVASSVAWDRLAQLVATGTQLSNTLADEPLAYVGQGYHRFRRYAPRMLRC
                     LKLEAAPVAGPLVAAALSIGEMKGVASPERRFLRPSSKWNRHLRAQEKGDTRLWEVAVL
                     FHLRDAFRSGDVWLAHSRRYGDLKQVLVPMIAAQENAKLAVPSNPQDWLADRKARLTIA
                     LKRLARAARNGTIPHGSIEDGTLRIDRLTADVPDGAEALILDLYRRMPSVRITDMLLEV
                     DAALGFTDAFTHLRTGAPCRDRIGLLNVLLAEGLNLGLRKMAEATNTHDYWQLSRLARW
                     HVESEAMNQALAIVVAAQGKLPMSRVWGMGTSASSDGQFFPTARHGEAMNMVNAKYGSV
                     PGLKAYTHVSDQFAPFACQSIPATVSEAPYILDGLLMNEVGRHVREQYADTAGFTDHLF
                     GASSLLGYNLVLRIRDLPSKRLYVFNPDTTPRELRKLVGGKAREDLIVANWPDIFRCAA
                     TMTAGKIRPSQLLRKLASYPRQNNLAVALREVGRIERTLFIIEWILDTDMQRRAQIGLN
                     KGEAHHALKNALRIGRQGEIRDRTTEGQHYRIAGLNLLTAVIIYWNTVHLGHAVTERRN
                     EGLDVPPEFLPHISPLGWAHILLTGEYLWPKEPKA"
                     /name="Tn3-like element Tn5403 family transposase"
     gene            complement(6288..6710)
                     /locus_tag="BME54_RS30650"
                     /old_locus_tag="BME54_30650"
     CDS             complement(6288..6710)
                     /locus_tag="BME54_RS30650"
                     /old_locus_tag="BME54_30650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005229777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_025714834.1"
                     /translation="MARVSISEAARLVKVSRPTIYKMINSGKLSYTSVVKHGKAIKVID
                     TSELIRVFGSLDGVIDTVKYDVKSDAESTSINSVGLHDLQHRIALLEAENDGLKGAVKA
                     RDEHIDSLRQAMQLLEHKREPSSPPHSPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            complement(6710..6901)
                     /locus_tag="BME54_RS30655"
                     /old_locus_tag="BME54_30655"
     CDS             complement(6710..6901)
                     /locus_tag="BME54_RS30655"
                     /old_locus_tag="BME54_30655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_023302508.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSRLDELQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     Typing          23..472
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="80.0"
                     /coverage="92.0"
                     /evalue="8.57e-86"
ORIGIN
        1 atgtcagaca gatctctttt ccgcttcctc gctcactcag tcgctacgct cctgccgttc
       61 ggctgcggcg agcggtcgca acgcgcacat aacgacatag agcagacagc tcggagaggg
      121 agaaggcagc acagcggccg tttttccata ggctccgccc ccctgacaag catcacgaaa
      181 tctgacgctc aaatcagtgg tggcgaaacc cgacaggact taaagatacc gggcgtttcc
      241 ccccggtggc tccctcttgc gctttcctgt tcccgccctg cggtttacgt gttgtggtgg
      301 aagccttacc taaatcacca cgtcccgctc cgtttagaca gttcgctcca agctgggctg
      361 tatgcaagaa ccccccgttc agcccgacta ccacgccctt tccggtaact atcacttgag
      421 tccaacccgg agcagacacg acaaatcgcc attggcggta gccactggta acggggtaac
      481 aagatgccta tagattcttt agtcttgatg tttgagccta acaacggcta aacttaaaga
      541 gaaatttggc ggcagcggtc ttgttcaccc tgttaccacg gttaagcagt tccccaactg
      601 acttaacctt cgaaaaaccg ccttgcaggg cggttttttc gttaatgcgt aacgatactc
      661 ttagccaaag agtaacgtca agaatgcatt cctagcttag cgttaaaccc atccctgcct
      721 atgcacacct cgtattcacc agtccgatct tttaacaaag cttttatatc cagcaagata
      781 gtagcgatta ggctgattct ttttagtgtc atcagctttt tcactagaaa tcctagtgat
      841 cagacctacc aatgagagga gtgctaatgc tctctggata tctttttctg taatgccaac
      901 agcactactt atagtctggt aagaagctaa cgaatactct gtgtagttat cacgaacaga
      961 agcaagataa atgaatattt ttagcgcatg cagctctact tttcgcctta gctttaaatc
     1021 ttcaaatggt gtaatagcat ggccaccttc actagttatt gctcttacag gtatcttgca
     1081 ccatccacta cgctctttat tgcttatcag tttataggtg ttgtttcgac caatccgcgt
     1141 aacatcaatc atatccagct taactaaaat agctgtacct tctcttatca gctgccgact
     1201 aatccctgtc atttctgata gccgggtata ggttattttc acttcctgaa tgccaacttc
     1261 ttcagcgcat ttcatggtaa ttgctatgta aatcataaga gcggcaacct ttgctgatgg
     1321 tttgccgatc tcatcgttac gccaattaaa tttccgaata agtccgttat gaacccacca
     1381 agagaacatc ggagcccaat tagggatcat ctcacttcct ccagccaata atgcaaatag
     1441 caacgaagcc tgccaaaaca gctaatgaca acaggaacgg aacgaaccca ctgatgacag
     1501 gggctattga ggtaataaat gaactgataa cggttaaatt ttccataaaa ggtccttcta
     1561 cgaggagtta ttttcaaatt ttatctcgcc aaaggattta catctagaga caatggtttt
     1621 aatttttttt gaaaataaaa aataaaacca atttaatcaa tcacttactt ttagaatcat
     1681 tagtttttag catctaaaaa ttagttcata agatgaaatt tagcgcgata aaagaccatt
     1741 tatcagtcaa aaaacgccca aattgataaa ctattagttc acaaaaaaca aacataaacc
     1801 attgataaat atatgttttt tgtaaggtgt tgttttataa tactattttt ttatcgtcga
     1861 gtaagagcca cagagtcgag ctatttacca taacatccgt tgcccgcacc gcctcagagg
     1921 ccctcagggc gtttctgagg cctccggcct gaaacacaca cctttctgtg cccatatcga
     1981 gaaaaaacgc ccctgatgat tctggcgcga ctgcatggct atgcacggac atacctggcc
     2041 gggattttag cggctaaaat ccgatgaacg ccctgaaagc caccacgaac caccccgata
     2101 acggtgaacg gatgcgcaat ttattgcgtg gccgtgaggc gttgccggca cagccggaaa
     2161 accggttttc agcacgttca ggaatcgggt tcgtcgacgg ccggcaatca cgttatggca
     2221 agtcgccgga cgactcacca cacgattcac ggggtcggtt ccggctgagg gcgaaatgac
     2281 accctaagcg ttagctctgt gtcgttgcac gatgtcagcg acggtattct tgctgatacc
     2341 gagctcgcgt gcgatccagc gatagctgcg tccctcggcc ctcatcgcaa ccaccttagg
     2401 caaaagtcgg tctgattttg gtcgcactcc ggcctgacga ccaagcctct taccacgtgc
     2461 cttcgcaaca gcaaggcctg acttgacccg ctcgctgatg agatcccgct caaactccgc
     2521 aatgccggaa agaaacgtcg ccagcattcg tccatacggc gacgaaagat cgaacgccat
     2581 tccattcatg gctatcacgg aaaccttcca gttctccagt tcacgtagcg tattgagcag
     2641 atcgagcgtc gagcgccccc accgggaaag ctcagtgacc aggattgcat caatttgtct
     2701 ggactgggca agcgccagga ctttctttcg ctcggcccgg tcgagtttag ttcctgaacc
     2761 tgtttcctta aatattccca ccacgtcgta gccggcacag ccggcgaagg ctcgcagatc
     2821 aaattcctgg cgttcacaag actgatccgc tgttgaaacc cggcagtaaa tggcggcacg
     2881 atgtcccaat tgaaccctcc tggatttttg tatcggaacg ccctgattta tatgggctgg
     2941 ctgttgtcca aaacagacta tacttcaaaa gggacgaatt tgtatgtcac gacgccatat
     3001 tttcaccgaa cggcagcgag cagcgctgtt cgatctgccc acggacgaac tgtcgctact
     3061 gaagttctac acgctgggcg atgatgacct ggaaaacatt aggcagcgcc gcagaccgga
     3121 aaacaggatt ggctttgccc tgcaactttg tgccttacga tatccgggcc gtgcactggc
     3181 tcctggtgag atgatcccgc gtgaagtcct ttccttcgtc ggtgctcagc ttggagttcc
     3241 ggctgatgcg cttctcactt atgccacacg gcgccaaacc cgtcagcagc acatggacac
     3301 gctgcgcgaa atttacggct acaagacctt cacgggccgt ggtgcccgtg atctgcggga
     3361 gtggactttc ggccaggccg aagatgccag atcaaacgag gatcttgctc atcgttttat
     3421 tgtgcggtgt cgggaaactt ccaccattct gcccgcagta tcgacaatcg agcgcttgtg
     3481 cgcggatgct ctggtcgccg ctgagcggcg gattgaaacg cggattgcgg aaaatttaac
     3541 agcggatgtt cgcgatcacc tggacaaact tctgagtgaa atgctcgccg gcaatatcag
     3601 tcgtttcatc tggcttcgca acttcgaggt tggtaacaac tcggctgctg ctaaccgttt
     3661 gctcgacagg ctcgaatttc tgcgtaccct gaatatcaat catagtgctt tggccagcat
     3721 acctgcccat cgcattgccc ggctgcgtcg gcagggtgaa cgctacttca ccgacggttt
     3781 gcgtgacatc acttcggacc gccgctgggc gatccttgcc gtctgtgttg tggagtggga
     3841 agcggcgatt gctgatgcca tagtcgaaac ccatgacagg atcgtaggaa aaacctggcg
     3901 ggaagcgaag cgccagcatg acgaaacaat ttccggctct aaagccacac tcacggatac
     3961 gatccgtacc ttcaccgcgc tgggagcttc gttgcttgag gcccgcagtg acggaacccc
     4021 gctggagatg gctgtcgcca gttcggttgc atgggaccgg ctcgctcaac tggtagcgac
     4081 agggactcaa ctcagcaaca cgctagccga tgagcctctt gcatatgtcg ggcagggata
     4141 ccatcgcttt cgtcgttatg cgccccgcat gttgcgctgt ctgaagctcg aagccgcgcc
     4201 ggtcgccgga ccattggtag cagcagcttt gtcgatcgga gagatgaaag gtgttgcatc
     4261 gccagaaagg cgtttcctgc ggcccagctc caaatggaac cgtcatttac gagctcagga
     4321 aaaaggagat acccgtcttt gggaagtggc ggtactcttt cacctccggg atgcttttcg
     4381 ttccggagat gtctggctcg ctcattcgcg ccgctatggt gacctcaagc aggtactggt
     4441 gccgatgatc gcggcgcagg aaaatgcaaa actggccgtg ccttccaacc cacaggattg
     4501 gctggcagac agaaaggcgc gactcacgat cgctcttaag cggctggccc gggctgcccg
     4561 taacggcact attccgcacg gtagcataga agatggaacg ttgcggatcg acaggttgac
     4621 agcagacgtg ccggatggtg ccgaggcact catactggat ctgtatcgcc gaatgccgtc
     4681 cgttcggatt accgacatgc tgcttgaagt tgatgcagcc cttggtttca cagatgcgtt
     4741 tacccatctg agaaccgggg ctccatgtcg cgaccggatc ggtctgctca acgtcctgct
     4801 cgctgaaggg ctcaatctgg gcctgcgtaa gatggcggaa gctacaaaca cgcatgatta
     4861 ctggcagctc tcacgccttg cccgctggca tgttgaaagc gaagccatga accaggcatt
     4921 ggcaattgtg gtggccgcgc agggtaaact gccgatgtca cgcgtctggg ggatgggcac
     4981 gtcagcatcg agcgatggtc agtttttccc gacagcgcgg catggcgaag ccatgaacat
     5041 ggtcaatgcc aaatatggtt ctgttcccgg cctcaaagcg tatactcacg taagcgacca
     5101 gttcgcgcca ttcgcttgtc agtcgatccc ggcgaccgtg agcgaggcac cgtatattct
     5161 cgatggacta ctgatgaacg aggtcggtcg ccatgttcgc gaacagtatg ccgatacagc
     5221 aggattcacc gaccatttgt tcggagccag tagcctgctc ggctacaatc tcgttctgcg
     5281 aatcagggat ctgccatcga agcggttgta cgtatttaat cccgatacga cccccaggga
     5341 gttacgcaag ttggtaggtg gaaaagcccg ggaggatctt atcgttgcga actggcctga
     5401 tattttccgt tgtgccgcga cgatgaccgc tggcaaaatc aggcccagcc aactcctgcg
     5461 caagctcgct tcttacccac gacaaaacaa ccttgcagtt gcgcttcgtg aagttggtcg
     5521 tattgaacgg acccttttca ttattgagtg gatcctggat acggacatgc agcggcgtgc
     5581 tcagatcggt cttaacaagg gagaggccca ccatgcgctc aaaaatgcgc tccgtatcgg
     5641 gaggcagggg gaaattcgcg atcgcacgac agaggggcag cactaccgaa tcgctgggct
     5701 caatttattg actgcggtga tcatttactg gaataccgtc catcttggtc atgccgtcac
     5761 ggagcggcgg aacgaagggt tggatgttcc ccctgaattt cttccccaca tatccccatt
     5821 gggctgggcg cacattctac tgactggcga atatctttgg cccaaggaac cgaaagctta
     5881 gggtgtcatt tcgccctcag ccggaaccga ccccttcacc ggcgattcga atcgtgaatt
     5941 gaatcaagag tcaccatgaa caaaaaacgc ccaaattgat gaattgaatc aagagtcgat
     6001 tcatcataac aacatgataa taaagcgtga ttcacatatg aatcgtgggc aattcgtaaa
     6061 cgattcgcca tagagtcgtc cacgacttgg atctgcactt tgtaacacat cactgcacat
     6121 taatttttca ttaaccaatt gttttaaata aggaatctgc aaaattttaa ttttgcgtag
     6181 tgtgtgggta tttttagtcg tgaggagcgt tcagagatct ggcgattttt gggaaggttc
     6241 aggaactccc tgggatggcc ggagaggaaa actcaagcat ggcaggatca ggattttttc
     6301 cagaatttcc accacgggga atggggtggt gaagaaggct cgcgcttgtg ctccagaagc
     6361 tgcatagcct gacgaaggga atcaatatgc tcatctcgag ccttaacagc ccctttaaga
     6421 ccatcgtttt cagcttcaag tagagcgatt ctatgttgta aatcatgtaa accaacgctg
     6481 ttaatacttg tagattctgc gtcacttttt acatcatatt ttacagtatc gatgacacca
     6541 tcaagagaac caaacactct aataagctct gaagtatcaa taactttaat agccttcccg
     6601 tgctttacaa cagaggtgta acttaacttc ccactgttaa tcatcttgta aattgtggga
     6661 cggctaacct taacaagccg tgccgcttca ctaatagaca ctctggccat caattaccat
     6721 cctgtaattc atccagtctc gaggacagtg tacggaaaag atgctccgca tcatcgtgga
     6781 gtttctcaca aaggtcggcc tcaacatcga gatcaagctc gttaagcttc tccagcagga
     6841 gcagagactg attctggatg aatttagcca tgttcagcgc tgttttctgt tgtttcgtca
     6901 taaagggcct cagagcgtca gtgctca
//
