LOCUS       NZ_CP033398             2088 bp    DNA     circular CON 18-JUN-2024
DEFINITION  Escherichia coli strain WCHEC020031 plasmid p2_020031, complete
            sequence.
ACCESSION   NZ_CP033398
VERSION     NZ_CP033398.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08932733
            Assembly: GCF_003711045.1
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 2088)
  AUTHORS   Liu,L., Feng,Y. and Zong,Z.
  TITLE     The complete genome of Escherichia coli strain WCHEC020031
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2088)
  AUTHORS   Liu,L., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-OCT-2018) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 200.0x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003711045.1-RS_2024_06_18
            Annotation Date                   :: 06/18/2024 01:48:30
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,783
            CDSs (total)                      :: 4,667
            Genes (coding)                    :: 4,429
            CDSs (with protein)               :: 4,429
            Genes (RNA)                       :: 116
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 238
            CDSs (without protein)            :: 238
            Pseudo Genes (ambiguous residues) :: 0 of 238
            Pseudo Genes (frameshifted)       :: 77 of 238
            Pseudo Genes (incomplete)         :: 153 of 238
            Pseudo Genes (internal stop)      :: 49 of 238
            Pseudo Genes (multiple problems)  :: 34 of 238
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP033398.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2088
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="WCHEC020031"
                     /host="Homo sapiens"
                     /db_xref="taxon:562"
                     /plasmid="p2_020031"
                     /geo_loc_name="China: Chengdu, Sichuan"
                     /collection_date="2016"
     gene            complement(join(1394..2088,1..271))
                     /locus_tag="EDM51_RS00030"
                     /old_locus_tag="EDM51_00030"
     CDS             complement(join(1394..2088,1..271))
                     /locus_tag="EDM51_RS00030"
                     /old_locus_tag="EDM51_00030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012421200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_039064478.1"
                     /translation="MSEDKFLSDYSPRDAVWDTQRTLTDSVGGIYQTAAEFERYALRMA
                     SCSGLLRFGWSTIMETGETRLRLRSAQFCRVRHCPVCQWRRTLMWQARFYQALPKIVVD
                     YPSSRWLFLTLTVRNCEIGELGTVLTAMNAAFKRMEKRKELSPVQGWIRATEVTRGKDG
                     SAHPHFHCLLMVQPSWFKGKNYVKHERWVELWRDCLRVNYEPNIDIRAVKTKTGEVVAN
                     VAEQLQSAVAETLKYSVKPEDMANDPEWFLELTRQLHKRRFISTGGALKNVLQLDRETN
                     EDLAIADDVGDGTDDGKRTAFVWDSGKRRYKRAPEKDKSD"
                     /name="protein rep"
     gene            complement(1124..1390)
                     /locus_tag="EDM51_RS00040"
                     /old_locus_tag="EDM51_00040"
     CDS             complement(1124..1390)
                     /locus_tag="EDM51_RS00040"
                     /old_locus_tag="EDM51_00040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001024536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001024536.1"
                     /translation="MNINIEYLNGNKTIGLFFLRSEAVIPDRFKNLILLIDGLSFGTFG
                     FHPHEGFEDELILYIQKTNERVKTLFVKIDLNGIKFGFLRTHS"
                     /name="hypothetical protein"
     Typing          complement(1735..1966)
                     /name="Col(BS512)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.05e-118"
ORIGIN
        1 gccacatgag ggttcttctc cactggcaga cagggcaatg acggacacgg caaaattgcg
       61 cactacgaag ccgtaggcgc gtttctccgg tttccatgat ggtagaccaa ccaaaacgta
      121 acaaaccgct acaggaggcc atacggagtg catagcgctc gaattcagca gcagtctggt
      181 agataccccc gacagaatcg gtaagcgtgc gctgggtatc ccaaactgca tcacgggggc
      241 tgtagtccga aaggaattta tcttctgaca ttaagcctgc tccgatctgg gcaggctgtg
      301 atttgatgtg gtatattcat cacgtacctg tgcattgcga gccagtacat gtcaccagag
      361 tttgccgctg aggtgacaca ttcgaaatgt tggggagtgt tgacgcactc cccaacgccg
      421 attaaaaacg cctcaattct gctccatttt ctttgacctg tcaaaaccca ctcaaagcct
      481 cgtcattact gggctaaacc actatttcat acccgccatt tatcccttaa gtataaatac
      541 aaggatcacg cgcgagaatt gcgcaaaaaa taaccacaat tttaaccccc caaaacaagc
      601 accccgaacg gcttacccca accttttcca cacacccgat caccaaaaca ggggataaaa
      661 acaaaaccct gtcttacagg tggatggcct cacttcgtga aaccatccac cccgcataag
      721 ttttttaatc ggtggtgtcg tcaatcacta aatcggaacc ccaaagggga cccccacgat
      781 ttagcatttg acgagattaa ctctcggaga tggcatcatg cttttaacgg actttaaaaa
      841 acggtgaacg gatgcggatt ttaatccgtg tctgtgaggc gttgagcaac gagcaaagcg
      901 aggcggtaga aagagagcca gcggcaggct caggacgata atccggggaa aatgtaccac
      961 tcgcagagtg ttaacatttg acatcggatt gtctatcctg cattggtgtc gagttggcaa
     1021 ggctgaggat aatgctgagg ataatgcagg atagacagag cactagagat tgcatgcaat
     1081 ctcgtaccta tcacctcagc ctgccgctgg ctcttttcca gaactaagaa tgcgttctta
     1141 aaaatccaaa cttgataccg tttaaatcta ttttcacaaa aagagttttt accctctcgt
     1201 ttgttttctg aatatataaa attaattcat cctcaaaacc ttcgtgcgga tgaaaaccaa
     1261 atgtgccaaa acttaatcca tcaataagca aaataaggtt tttaaacctg tcaggaatca
     1321 ccgcttcact tcttaaaaaa aataaaccaa tagtcttatt tccattcagg tattcaatat
     1381 taatattcat acgttaatcc gatttatcct tctcaggggc gcgtttgtaa cgccgtttac
     1441 ctgaatccca gacaaacgcc gtccgcttcc cgtcatcagt gccatcccct acatcgtcgg
     1501 caatggcaag atcctcattg gtttctcgat ccaactggag gacgtttttt agcgctccac
     1561 cggtcgagat aaaacggcgc ttgtgaagct gccgcgtcag ctcaagaaac cactcaggat
     1621 cgtttgccat atcttccggt ttaacggagt atttcagcgt ttcagcaacc gcgctttgca
     1681 gttgctcggc aacgttggcc acaacctcac ctgtcttagt ttttactgcc cgaatatcga
     1741 tattcggctc atagttcacc cgcaagcaat cgcgccagag ttctacccaa cgttcgtgct
     1801 taacgtagtt cttcccttta aaccaagaag gttgcaccat cagcagacag tgaaaatgcg
     1861 gatgtgcgct gccatcctta cctcgcgtca cctccgtagc cctgatccac ccctgaacag
     1921 gtgatagctc ctttcgcttt tccattcgct taaacgccgc attcattgct gtaaggactg
     1981 ttccaagttc acctatctcg cagttcctga cagttaacgt cagaaacaac catcgggaag
     2041 acgggtaatc cacaacgatt ttcggtagag cctgataaaa acgggctt
//
