LOCUS       NZ_CP033358             5431 bp    DNA     circular CON 07-FEB-2024
DEFINITION  Salmonella enterica subsp. enterica strain EQAS2016S1 plasmid
            pEQAS2016S1-3, complete sequence.
ACCESSION   NZ_CP033358
VERSION     NZ_CP033358.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10316363
            Assembly: GCF_009728795.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica
  ORGANISM  Salmonella enterica subsp. enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 5431)
  AUTHORS   Hu,Y., Li,F. and Fanning,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2018) Microbiology Laboratory, China National
            Centre for Food Safety Risk Assessment, No. 7, Panjiayuan Nanli,
            Chaoyang District, Beijing, Beijing 100021, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: MAR-2018
            Assembly Method                   :: HGAP v. 3.0
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 85.44x
            Sequencing Technology             :: PacBio RSII
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 02/07/2024 04:08:23
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,578
            CDSs (total)                      :: 4,456
            Genes (coding)                    :: 4,339
            CDSs (with protein)               :: 4,339
            Genes (RNA)                       :: 122
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 16
            Pseudo Genes (total)              :: 117
            CDSs (without protein)            :: 117
            Pseudo Genes (ambiguous residues) :: 0 of 117
            Pseudo Genes (frameshifted)       :: 58 of 117
            Pseudo Genes (incomplete)         :: 74 of 117
            Pseudo Genes (internal stop)      :: 15 of 117
            Pseudo Genes (multiple problems)  :: 26 of 117
            Pseudo Genes (short protein)      :: 1 of 117
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP033358.1.
            Bacteria and source DNA available from ChIna National Center for
            Food Safety Risk Assessment.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5431
                     /organism="Salmonella enterica subsp. enterica"
                     /mol_type="genomic DNA"
                     /strain="EQAS2016S1"
                     /sub_species="enterica"
                     /db_xref="taxon:59201"
                     /plasmid="pEQAS2016S1-3"
                     /collection_date="2016-12"
     gene            48..371
                     /locus_tag="EB781_RS00190"
                     /old_locus_tag="EB781_00235"
     CDS             48..371
                     /locus_tag="EB781_RS00190"
                     /old_locus_tag="EB781_00235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000956000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_155673745.1"
                     /translation="MLTIRVTDDEHARLLERCEGKQLAVWMRRICLGEPVARSGKLPTL
                     APPLLRQLAAIGNNLNQTARKVNSGQWSSGDRVQVVAALMAIERELRSLRKVVREHGAR
                     DDS"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            464..970
                     /locus_tag="EB781_RS00195"
     CDS             464..970
                     /locus_tag="EB781_RS00195"
                     /inference="COORDINATES: protein motif:HMM:NF015397.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /protein_id="WP_155673743.1"
                     /translation="MIRKEVRELIDATPFAKKYTSGVLSFAEKELPPGGREKVMASFER
                     VLMPGLEKNQYSILWVEHQDKGRLELNFVIPNMELQTGKRLQPYYDRADRPRIDAWQTL
                     VNHHYGLHDPNAPENRRILTLSDNLPETKQALAESVTRGIDALYHVGEIKGRQGCDSGA
                     HGGRD"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            1051..1574
                     /locus_tag="EB781_RS23120"
                     /pseudo=""
     CDS             1051..1574
                     /locus_tag="EB781_RS23120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001447511.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /name="MbeB family mobilization protein"
     gene            1581..1814
                     /locus_tag="EB781_RS00205"
     CDS             1581..1814
                     /locus_tag="EB781_RS00205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_001427885.1"
                     /translation="MTELERHLLNALEQLQQDYMQRLNEWESAFVELQKMFSLTQRDNA
                     MLNERVMQLSQQVQHLSEQTERLSQLYSENWR"
                     /name="MbeD family mobilization/exclusion protein"
     gene            2147..2758
                     /locus_tag="EB781_RS00210"
                     /old_locus_tag="EB781_00250"
     CDS             2147..2758
                     /locus_tag="EB781_RS00210"
                     /old_locus_tag="EB781_00250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000130481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000130481.1"
                     /translation="MTDKTTDIKMALENMIRFRDTIERLGGSMAKEFDVETKGKRTYSM
                     NNDMSDLYNVISRAVEASGADHSINEKLTNVLKRELVDYVSIAHLKTKLSVLYEFEKNY
                     LQLIAEYKEEIKFASSLQEDLRKERAKFFSETLKEVHQTLNESQVDNEVASKWIKELVG
                     SYTKSLDLSGGLVEEHTLDTIACIRAEAKLNKPSIEPGNN"
                     /name="hypothetical protein"
     gene            2761..3300
                     /locus_tag="EB781_RS00215"
                     /old_locus_tag="EB781_00255"
     CDS             2761..3300
                     /locus_tag="EB781_RS00215"
                     /old_locus_tag="EB781_00255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000897048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000897048.1"
                     /translation="MAGGRHINSLLYVLVAILERKVNDFKLSSSELPEILAALREAREC
                     LVSRSINEDPQLYSALFLYEKNEGLLSLSFEREYSIFINSNLECILRKVSDIKDKKQGK
                     LQKIMNEFVRFKYSSGDSCADLLFLSGKLEQIRKIYEVFDRDRNRLEFLNYMMKKERVI
                     FEREFERLLGEKNGDF"
                     /name="hypothetical protein"
     gene            3287..4090
                     /locus_tag="EB781_RS00220"
                     /old_locus_tag="EB781_00260"
     CDS             3287..4090
                     /locus_tag="EB781_RS00220"
                     /old_locus_tag="EB781_00260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000510993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000510993.1"
                     /translation="MGIFSQIGSALLNCISKPVDALCEWAKEPLKDREYRREEASKESE
                     HKRNMDVLTAKKRVEHELRMSELNAEYELREKEKTLEVDLEVRRVREIEKAVAEIQEWR
                     KSQELERMERTTAAIARYKEQLTKLNIEVINSIGNMQLDLKERAQKFVYEKAVQYKRLQ
                     DEATEEAMNDLIRIEEKFGDNERAKDILIRAVDTKMGNVIDTSTRFLEELNRDIVSLNQ
                     SIDRLTNQGQKFIESHLERFHIVDATSSLYITGDEKERLLLKNIN"
                     /name="hypothetical protein"
     gene            complement(4404..4562)
                     /locus_tag="EB781_RS23125"
     CDS             complement(4404..4562)
                     /locus_tag="EB781_RS23125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_071529495.1"
                     /translation="MHEPPVQPDRCALSGNYRLESNPVRHDKAPLAAATGNWTRWIEIL
                     RVLEVVA"
                     /name="replication initiation protein"
     gene            complement(5222..5414)
                     /locus_tag="EB781_RS00225"
                     /old_locus_tag="EB781_00275"
                     /pseudo=""
     CDS             complement(5222..5414)
                     /locus_tag="EB781_RS00225"
                     /old_locus_tag="EB781_00275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165985.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /name="Rop family plasmid primer RNA-binding protein"
     Typing          5060..5141
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="1.3400000000000002e-35"
     Typing          complement(4491..5036)
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="95.073"
                     /coverage="99.0"
                     /evalue="0.0"
     Typing          19..368
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="91.453"
                     /coverage="99.0"
                     /evalue="9.54e-64"
     Typing          474..934
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="94.156"
                     /coverage="100.0"
                     /evalue="4.63e-98"
ORIGIN
        1 gggggatttc tgttcatggg gtaatgatac cgatgaaacg cgagaggatg ctcacgatac
       61 gggttactga tgatgaacat gcacggttac tggaacgctg tgagggtaaa cagctggcgg
      121 tatggatgcg gcggatctgc ctgggtgagc cggttgcccg ttccgggaag ctgccgacac
      181 tggcaccgcc gttactgcgc cagctggctg ccatcgggaa taacctgaat cagacggcga
      241 ggaaggtgaa cagcgggcag tggtcttccg gtgaccgggt tcaggtggtg gccgcactga
      301 tggccatcga gagagagttg cgcagcttac ggaaggtcgt cagggaacat ggagcgcggg
      361 atgatagtta agtttcatgc caggggaaaa ggcggtggca gtggtccggt tgattacctg
      421 ctgggaaggg agcgtaaccg ggaaggggca acggtgcttc agggtgatcc ggaaagaagt
      481 ccgggaactc atcgatgcca cgccatttgc gaagaaatac acgtcaggtg ttctgtcgtt
      541 cgcggagaag gagctgccgc cgggagggcg tgaaaaagtg atggcgagct ttgagcgtgt
      601 actgatgccc ggtctcgaaa aaaatcagta cagcatcctg tgggtggagc accaggacaa
      661 gggacggctt gagctgaatt ttgtcattcc gaatatggag ctacagaccg gaaaacgcct
      721 ccagccgtac tacgaccggg cagacaggcc gagaattgat gcctggcaga cactggtgaa
      781 tcaccattac gggctgcatg accccaacgc cccggagaac cgccggatac tgactctctc
      841 tgataacctg ccggaaacga aacaggcgct tgctgagagc gtcacacgcg ggatagacgc
      901 tctttatcat gtcggggaga taaaaggccg tcagggatgt gattcaggcg ctcacggagg
      961 cagggattga agtggtcagg gtgacgcgaa gcagtatcag cattgcagac ccgaacggcg
     1021 ggaggaatat caggctgaaa ggagcatttt atgagcaatc ttttacagac gggcgcggag
     1081 ttcgagaaaa agctgaaaga gagagccgaa tctacagaga aaatgctgaa cagacgagtt
     1141 caggaggctc ggcgaatctg taagcgaggc tgtgacatca aaccgagacg aaaatcagag
     1201 acgctatagc cctgttcaca acgtcgacag aggaatcggc tgaaaaaaca ccgggaaggg
     1261 gtgaaagagg cgatgatgca gcaccggaag gacgtgttaa agctggcagg gaatacgggc
     1321 gtgatgttac tggggatagt cttttctcct gtttaccgcg agtggcggga cgctctggta
     1381 tcttggcggg cggatacagg cgaacctggg aagaaatcag gatacaggaa gagacattgc
     1441 agaaactgaa cgcgaagaca tggggcgtgg agtttgtgca ggacgggaac aggaaatttc
     1501 tggtcatccc gcaggggaaa tcggcaacgg tgattcccta tcaggggaag gactgggtac
     1561 aactgacgga gtgacacaga gtgacggagc tggaaagaca tttgctgaac gcattagagc
     1621 aactgcaaca ggactatatg cagcggctga acgaatggga gagcgccttc gtggaattgc
     1681 agaagatgtt ttcgcttacg caacgggaca acgcgatgct gaacgagcgg gtcatgcagt
     1741 tgagtcagca ggtgcagcac ttgagcgagc agacagaacg cttgagccag ttatacagcg
     1801 agaactggag ataagagagg aacggctgat acaggagcgc gaacatgcat tatccctgga
     1861 acgggagcgt cagccggaaa tacaggaacg cacgctggat ggtccttcgc tgggatggtg
     1921 aaaccatgaa aaatggcagg ttaagtggat taagaggggt taatgtggcc tgtaccatct
     1981 ggttgcatag gtattcatgc ggttaaaatt tatcaggcgc gatcgcggca gtttttcggg
     2041 tggtttgttg ccatttttac ctgtctgctg ccgtgatcgt gctgaacgcg ttttagcggt
     2101 gcgtgtaatg cgacgttatg gtaaatagat gagttaggcc taagtcatga cagataaaac
     2161 gaccgatatt aaaatggctt tagaaaacat gatcagattt cgtgacacta tagagagatt
     2221 gggaggttct atggcgaaag agtttgatgt tgagaccaaa ggaaaacgta cttattctat
     2281 gaataacgat atgagtgatt tatataatgt aatatcacgg gctgttgaag cgtctggtgc
     2341 cgatcattca attaatgaaa aattgacaaa tgtcttaaaa agagaattag ttgattatgt
     2401 cagcattgcg catctaaaaa ctaaattgtc tgtattatat gagtttgaaa agaattattt
     2461 gcagcttatc gcagaatata aggaagaaat aaaatttgct tcctctttgc aagaggattt
     2521 acgtaaagaa cgtgctaaat tcttttctga gacattaaaa gaggttcatc aaactctaaa
     2581 tgaatctcaa gttgataatg aagtggcatc aaaatggatt aaagaacttg ttggtagtta
     2641 taccaaaagc ttggatctaa gcggaggcct tgttgaagag catacattag atacaattgc
     2701 ttgtattcgc gctgaggcta aattaaataa accatctatt gagccgggca ataactaatt
     2761 atggccgggg gtagacatat aaatagtttg ctttatgttc ttgtggctat attagaacgt
     2821 aaagtgaatg actttaaatt gtcttcgtca gaacttcctg agatattggc tgctttacga
     2881 gaggcaaggg aatgccttgt atcgcgcagc atcaatgaag atcctcagtt atattcggca
     2941 ttatttttat atgaaaaaaa tgaagggttg ctaagtcttt catttgagag agaatactct
     3001 atttttatta actccaattt agagtgcata ttgaggaaag tttctgatat aaaagataaa
     3061 aagcagggta aactgcaaaa aataatgaat gaatttgtga ggtttaaata ttcaagcggc
     3121 gattcttgtg cggatctttt gtttttgagt ggtaaacttg aacagatacg taaaatatat
     3181 gaagtctttg atagggatag aaatagactt gaatttctta actatatgat gaagaaagaa
     3241 cgtgttattt ttgaaagaga gtttgaacgg cttttaggtg aaaaaaatgg ggatttttag
     3301 tcagattggt agcgctttgc ttaattgtat tagtaagcct gttgatgcac tctgtgaatg
     3361 ggctaaagaa ccattgaaag atagggaata tagaagagag gaggcttcaa aggagtctga
     3421 acataagcgc aacatggatg tcttgacggc caagaaacgt gttgaacatg aactcagaat
     3481 gagtgaattg aatgctgaat atgagctgag agaaaaagag aaaactcttg aagttgatct
     3541 agaggttcgt cgcgttcgcg aaatagaaaa agcagtagct gagatccagg aatggagaaa
     3601 gtcacaggaa cttgagagga tggagcgaac aacagcagct attgcacgtt acaaggagca
     3661 attaacgaaa ttaaatatag aagtgattaa ctctattggg aacatgcagc ttgatttaaa
     3721 ggagcgcgca cagaaatttg tctatgagaa agctgtacaa tataagcgcc tgcaagatga
     3781 agcaactgaa gaggctatga atgatcttat aaggattgag gaaaagtttg gtgataatga
     3841 aagagctaaa gatattttaa ttcgtgcagt tgatactaag atggggaatg ttattgatac
     3901 gtcaactcgg tttttggaag aattaaatag agatattgtt agtttaaacc aaagtattga
     3961 taggctgact aatcaaggac aaaaattcat tgaaagtcat ttggagcgtt ttcatattgt
     4021 tgatgcgaca tcttctttat atattacagg tgatgagaaa gaacgattgt tgctgaaaaa
     4081 tattaattag tattttgtga gtaatagcga tcattatttt taatggtcgc attgtttgtt
     4141 cttgcggttg ctaatcatta gtttttgtct tgtggttgaa aactgagcgc tatggctatg
     4201 acctgggagt gggagtgaaa agattcaagg atcctcttgt gatccttttt ttctgcgcgt
     4261 aatctgctgc ctgtaaacaa aaaaaccacc gctaccaacg gtggtttgtt tgccggaatc
     4321 tagagctacc aactctttct tccgaaggta actggcttgg tggagcacag ataccaaata
     4381 ctgtccttct agtgtagccg cagttaggcc accacttcaa gaactcttaa tatctcaatc
     4441 caccttgtcc agttaccagt ggctgctgcc agtggcgctt tgtcgtgtct taccgggttg
     4501 gactcaagac gatagttacc ggataaggcg cagcggtcgg gctgaacggg gggttcgtgc
     4561 acacagccca gcttggagcg aacgacctac accgaactga gataccaaca gcgtgagcta
     4621 tgagaaagcg ccacgcttcc cgaagggaga aaggcggaca ggtatccggt aagcggcagg
     4681 gtcgaaacag gagagcgcac gagggagctt ccagggggaa acgcctggta tctttatagt
     4741 cctgtcgggt ttcgccacct ctgacttgag cgtcgatttt tgtgatgctc gtcagggggg
     4801 cggagcctat ggaaaaacgc catcggcgtg gcctttctcc cggcctttgc cttttgcgca
     4861 catgttcttt ccggcgttat cccctgattc tgtggataac cgtattaccg cctttgagtg
     4921 agctgatacc gctcgccgca gccgaacgac cgagcgtagc gagtcagtga gcgaggaagc
     4981 ggaagagcgt cggaagctgc attttctcct tacgcatctg tgcggcattt cacacccggc
     5041 atggcgcact tttcatacaa tctgcactga tgccgcatgg ttaagccagt atacactccg
     5101 ctatcgctac gtgactggtt cagggcttcg ccccgaaacc ccctgacgcg ccctgacggg
     5161 cttgtctgct cccggcatcc gctcacagac aagctgtgac cgtctccggg agctgtatgt
     5221 gtcagaggtt ttcaccgtca cccccgaagc gtgcgaggca gctgcggtaa aagctcatcg
     5281 gcgtggtcgt gaagtgattc acaaatatcg gcctgttcat ctgcgtccag ttcgttgagc
     5341 ttctccagca gcgttaatgt ctggcttctt ataaagcggg ccatgttaag ggcggttttt
     5401 tcctgtttag tcactgatgc ctccgtgtaa g
//
