LOCUS       NZ_CP032846             2496 bp    DNA     circular CON 14-APR-2024
DEFINITION  Enterobacter hormaechei strain C15117 plasmid unnamed4, complete
            sequence.
ACCESSION   NZ_CP032846
VERSION     NZ_CP032846.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10174734
            Assembly: GCF_003660125.1
KEYWORDS    RefSeq.
SOURCE      Enterobacter hormaechei
  ORGANISM  Enterobacter hormaechei
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.
REFERENCE   1  (bases 1 to 2496)
  AUTHORS   Chowdhury,P.R., Fourment,M., DeMaerre,M.Z., Monahan,L.G.,
            Merlino,J., Gottlieb,T., Darling,A.E. and Djordjevic,S.
  TITLE     The complete genome of Enterobacter hormaechei C15117
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2496)
  AUTHORS   Chowdhury,P.R., Fourment,M., DeMaerre,M.Z., Monahan,L.G.,
            Merlino,J., Gottlieb,T., Darling,A.E. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-OCT-2018) Ithree Institute, University of Technology
            Sydney, Building 4 Harris St, Sydney, NSW 2007, Australia
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: MAR-2018
            Assembly Method :: Unicycler v. 0.4.3; SPAdes v. 3.11.1
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 7.8x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003660125.1-RS_2024_04_14
            Annotation Date                   :: 04/14/2024 18:49:22
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,934
            CDSs (total)                      :: 4,819
            Genes (coding)                    :: 4,722
            CDSs (with protein)               :: 4,722
            Genes (RNA)                       :: 115
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 97
            CDSs (without protein)            :: 97
            Pseudo Genes (ambiguous residues) :: 0 of 97
            Pseudo Genes (frameshifted)       :: 45 of 97
            Pseudo Genes (incomplete)         :: 61 of 97
            Pseudo Genes (internal stop)      :: 18 of 97
            Pseudo Genes (multiple problems)  :: 23 of 97
            Pseudo Genes (short protein)      :: 1 of 97
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP032846.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2496
                     /organism="Enterobacter hormaechei"
                     /mol_type="genomic DNA"
                     /strain="C15117"
                     /isolation_source="Burns unit surveillance"
                     /db_xref="taxon:158836"
                     /plasmid="unnamed4"
                     /geo_loc_name="Australia: Sydney"
                     /lat_lon="33.8688 S 151.2093 E"
                     /collection_date="2007"
                     /collected_by="Concor Hospital Microbiology Laboratory"
                     /note="1"
     gene            506..733
                     /locus_tag="D8M16_RS25140"
     CDS             506..733
                     /locus_tag="D8M16_RS25140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010615788.1"
                     /GO_component="GO:0005886 - plasma membrane [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgdI/YgdR family lipoprotein"
                     /protein_id="WP_021243043.1"
                     /translation="MKKIFVSVFAAAVALSALTGCTRTSYAIHTNDGRTIVSDGKPKES
                     DSGLLGYTDANGVKQQINKTDVKEVSEIPH"
                     /name="YgdI/YgdR family lipoprotein"
     gene            1099..1284
                     /locus_tag="D8M16_RS25145"
     CDS             1099..1284
                     /locus_tag="D8M16_RS25145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_013772937.1"
                     /translation="MTRQESAALNMAKFIRAQTLLLLERLEQMDLDEAAGCCEHLHDQA
                     EALYAMLNAQIGEENA"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(1575..1766)
                     /locus_tag="D8M16_RS25155"
     CDS             complement(1575..1766)
                     /locus_tag="D8M16_RS25155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001046776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_021243041.1"
                     /translation="MTLSDDERHLLVSVVSVWLRRAGGDAGAMMLDAYRQILSETEPAV
                     RTVMLEFLESVRIHYISS"
                     /name="hypothetical protein"
     Typing          complement(1332..1419)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="6.86e-39"
     Typing          2047..2496
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="90.308"
                     /coverage="86.0"
                     /evalue="2.17e-166"
ORIGIN
        1 gagtccaacc cggaaagaca cgactaatcg ccattggcaa cggccattgg caaacaggat
       61 gtgcgagaga tgtctcaaga gttcttgaag tggcggcctt agtgaggcta cactgaaagg
      121 acaaatttgg tgacatgtct cgcacaagac tgttaccacg gttaggggat ctgccaggat
      181 tacctaacct tcgaaaaacc acctgccagg gtggtttttt cgtttacagg gcaagagatt
      241 acgcgcgaaa aaaaaggatc tcaagaagat cctttataaa ttagacatcc aacctcacaa
      301 agaggaatac ttaaatcatc ttggtatatg tatcggccgg attacatctc atataagcct
      361 cctccccgcc tgacaccaca ctttgaccat agcacctcgc gcctaactcg atatacagcc
      421 caccatcaag cctcttttca cataaaaaat gacctatagt tagatggtta gtgaccaaaa
      481 ctgatatgga taaaaggagc tggctttgaa aaagattttt gtttcagtgt tcgcagcggc
      541 agttgcgctt tcagccctca ccggctgcac gcgcacaagc tatgccatac acaccaatga
      601 cggtcgcact attgtcagcg acggcaaacc taaagaatca gactcaggcc tgcttggcta
      661 tacagacgcg aatggtgtca aacagcagat caataaaacc gacgttaaag aagtctccga
      721 aattccgcac tgagcatctt ctccgaaaaa ggccgctaat gtggcctttt tctttacctg
      781 tggttctccg ccaaaatccc agcaaattgc atcaccaaag ctaaaagctt tcagggttgt
      841 ctaaaaagca caagacataa gaggaagtgc ggtattttat aatcaagccc ccaagaattt
      901 accataacat ccgttgcccg caccgcctga gacgcgttca gcgcgttcct gacgaaacca
      961 tgacaaaaac cacaacaaac caccccggaa cccgtcagaa acgcgcctgt taaattttaa
     1021 cggcatgcat gactatgcac cagaatgacg ccatgctctt ttcacgcaaa aatcatcacc
     1081 agacggggaa aatcaccagt gaccagacag gaatccgccg ccctcaatat ggccaaattt
     1141 atccgcgcac agacacttct cctccttgag cggctcgagc agatggatct ggatgaggct
     1201 gccggctgct gtgagcacct gcacgatcag gccgaagcgc tttacgccat gctgaacgca
     1261 cagataggcg aggaaaatgc gtgaaaatcg gtgaacgggt gcgcaattca gtgcgcggcc
     1321 gtgaggcgat ggcggggtgt cggggcgcag ccctgaccag ggtatttgtg atgccggcgc
     1381 gtgcgcggta ttacaaatgc acatcctgtc ccggaacgga caccgggaaa cagcaaaaaa
     1441 aaccgggcgg cacgcccgga actcaatcaa gttagattag attactctca ctcgtccata
     1501 acagcatcat ggaacgacga ccaccgtccg tgacggccgc ctcgtttaag tatggacaga
     1561 aatacagaaa atgctcagga cgaaatgtaa tgaatgcgaa cggattcaag aaattcgagc
     1621 atgacagtcc ttacggccgg ttcggtttca gacaaaatct gccggtatgc atccagcatc
     1681 atggctccgg catcccctcc ggcacgccgt agccagaccg aaacaacgga cacaagcagg
     1741 tgtcgctcat catcactaag agtcatcagg gctccggaag aaaaaccaaa catggcttac
     1801 ctactgttaa cggcaacgca gaagaaaggt ttacagggta gcgggcaggg atgaaaaaaa
     1861 aaaaaattgc agtcaggccg gaacggctgc tgaaccggta caggcgggtt ccgggcgcag
     1921 cgccggacca gtcacggagc actagcggag tgtatactgg cttaagatgt agcatggcag
     1981 taacacatag cattaatgcc acataagaca ggcgcagaaa gtgaaagaaa acgcgtcagg
     2041 agaaaatgtg atacagaata tattccgctt cctcgctcac tgactcgctc cgctcggtcg
     2101 ttcggctgcg gcgagcggga cgggcttacg gatggagcag aaatttcctg ggggatgcca
     2161 ggaagatact taacgaagaa agcataaggc cgcgccaaag ccgtttttcc ataggctccg
     2221 cccccctgac aagcatcaca gaatctgacg ctcaaatcag tggtggcgaa acccgatgcg
     2281 gcttaaagat accaggcgtt tccccctggt ggctccctcg tgctcccccg cattcctgcc
     2341 tttcggttta ccggtgtcac tccgctgtta tggccgcggt ttctcattcc acgcctgaca
     2401 ctcagttccg ggaaggcagt tcgctccagg atggactgta tgcacgaacc ccccgttcag
     2461 tccgaccgct gcgccttatc cggtaactat caactt
//
