LOCUS       NZ_CP032844             4302 bp    DNA     linear   CON 14-APR-2024
DEFINITION  Enterobacter hormaechei strain C15117 plasmid unnamed2.
ACCESSION   NZ_CP032844
VERSION     NZ_CP032844.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10174734
            Assembly: GCF_003660125.1
KEYWORDS    RefSeq.
SOURCE      Enterobacter hormaechei
  ORGANISM  Enterobacter hormaechei
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.
REFERENCE   1  (bases 1 to 4302)
  AUTHORS   Chowdhury,P.R., Fourment,M., DeMaerre,M.Z., Monahan,L.G.,
            Merlino,J., Gottlieb,T., Darling,A.E. and Djordjevic,S.
  TITLE     The complete genome of Enterobacter hormaechei C15117
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4302)
  AUTHORS   Chowdhury,P.R., Fourment,M., DeMaerre,M.Z., Monahan,L.G.,
            Merlino,J., Gottlieb,T., Darling,A.E. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-OCT-2018) Ithree Institute, University of Technology
            Sydney, Building 4 Harris St, Sydney, NSW 2007, Australia
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: MAR-2018
            Assembly Method :: Unicycler v. 0.4.3; SPAdes v. 3.11.1
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 7.8x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003660125.1-RS_2024_04_14
            Annotation Date                   :: 04/14/2024 18:49:22
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,934
            CDSs (total)                      :: 4,819
            Genes (coding)                    :: 4,722
            CDSs (with protein)               :: 4,722
            Genes (RNA)                       :: 115
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 97
            CDSs (without protein)            :: 97
            Pseudo Genes (ambiguous residues) :: 0 of 97
            Pseudo Genes (frameshifted)       :: 45 of 97
            Pseudo Genes (incomplete)         :: 61 of 97
            Pseudo Genes (internal stop)      :: 18 of 97
            Pseudo Genes (multiple problems)  :: 23 of 97
            Pseudo Genes (short protein)      :: 1 of 97
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP032844.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..4302
                     /organism="Enterobacter hormaechei"
                     /mol_type="genomic DNA"
                     /strain="C15117"
                     /isolation_source="Burns unit surveillance"
                     /db_xref="taxon:158836"
                     /plasmid="unnamed2"
                     /geo_loc_name="Australia: Sydney"
                     /lat_lon="33.8688 S 151.2093 E"
                     /collection_date="2007"
                     /collected_by="Concor Hospital Microbiology Laboratory"
                     /note="1"
     gene            <1..271
                     /locus_tag="D8M16_RS25095"
     CDS             <1..271
                     /locus_tag="D8M16_RS25095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_121479478.1"
                     /translation="DGRQLAAWMRQTCLDEKPARTGKLPSISPALLRQLAGMGNNLNQI
                     ARRVNAGGGTGHDRVQIVAALMAIDAGLERLRHAVLEKGTDDDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            480..>914
                     /locus_tag="D8M16_RS25755"
                     /pseudo=""
     CDS             480..>914
                     /locus_tag="D8M16_RS25755"
                     /inference="COORDINATES: protein motif:HMM:NF015397.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            949..1440
                     /locus_tag="D8M16_RS25310"
     CDS             949..1440
                     /locus_tag="D8M16_RS25310"
                     /inference="COORDINATES: protein motif:HMM:NF016710.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_047720453.1"
                     /translation="MSSLLTLAKDLEQQSKAQQKSTGEMLKAAFSEHEQSVRAELNASA
                     RRISDAISAHEQSMSEAMEKNRRSVLLTAGRTWLTILMVSALLIATSGSILWWQGQQIT
                     DNYTHLRQQEDTLAKMTARTWGVRYQESSDGRRFLILPPGMQAEAIPYDGTTWIRLKQE
                     "
                     /name="MbeB family mobilization protein"
     gene            1447..1662
                     /locus_tag="D8M16_RS25315"
     CDS             1447..1662
                     /locus_tag="D8M16_RS25315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_021243037.1"
                     /translation="MTELEKQLLSVLEQLQQDYSQRLDEWESAFAEWRSMCGLMQRENA
                     VLNERVSDLSTQVLSLSEQLRRLSGN"
                     /name="MbeD family mobilization/exclusion protein"
     gene            2576..3862
                     /locus_tag="D8M16_RS25105"
     CDS             2576..3862
                     /locus_tag="D8M16_RS25105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002437803.1"
                     /GO_process="GO:0006935 - chemotaxis [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing methyl-accepting chemotaxis
                     protein"
                     /protein_id="WP_306170312.1"
                     /translation="MFSLNLQRSAISYDAICQNKPVIEFSPEGVINKASPLFLSTMGYR
                     ADEIIGHHHRIFCPPSLVSSPEYSQFWQRLARGESFSGKYLRLAKGNRSVWLEASYIPV
                     SDRRGRVIRVIKIAADISERVHSALEQEAVVNAINRSMAIITFNPEGIVLEANENFVNA
                     TGYKRDEIIGKHHRLFCAETLYKSDEYRHFWESLNQGEFFSGLFPRLNRQGDPLWFRAT
                     YNPVFNSDGQLYKIVKFATDVTADVLRNQREQEAAVHAWDMAVQTRESAQNGANVIENS
                     ILMIDRIAQGMGAVSTDISRLNNQSESIDDMVETIRKFAMQTRLIALNAAIEAARAGAS
                     GRSFAVVAAEVRNLAASVSSATEEIEQVVASNSQLAKDVLCGIENSLMNTREGVTLMRE
                     AGEVMTSIQRNAAGVETAVKDVAISVKAG"
                     /name="PAS domain-containing methyl-accepting chemotaxis
                     protein"
     Typing          complement(3904..4301)
                     /name="rep_cluster_2358"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="84.112"
                     /coverage="80.0"
                     /evalue="5.110000000000001e-103"
     Typing          262..1760
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="90.297"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 tgacggcagg cagctggcgg cgtggatgcg gcagacctgc ctggacgaaa aacctgcgcg
       61 caccggaaag ctcccctcaa tctcgccggc gctgctgcgc cagcttgccg gcatggggaa
      121 taacctgaac cagatagccc gccgtgttaa cgccggcggc ggcaccggcc atgacagggt
      181 gcagattgtg gcggcgctga tggccatcga tgccgggctt gagcggctgc ggcacgccgt
      241 tcttgagaaa ggaacggacg atgatcgtta aatttcatcc acgtggccgc ggcggtggcg
      301 ccgggccggt ggactatctg ctgggtaaag accggcagcg tgaaggcgcc agcgtcctgc
      361 aggggaagcc ggaagaagtc cgggagctga ttgacgcgtc gccttacgtg aagaaataca
      421 cctccggcgt cctgtcgttt gcggaggccg atctgcctcc cggccagcgg gaaaaactga
      481 tggccagctt cgagcgggtt ctgatgcccg gacttgataa agatcagtac agcattctgt
      541 gggtggagca cgaggacaag gggcgtctgg agctgaactt tctgatcccc aataccgagc
      601 tgctgaccgg caggcggctc cagccgtact acgaccgcgc cgaccggccg cgtatcgatg
      661 cctggcagac catcgtgaac ggcagactgg ggctgcacga tccgaacgcg ccggaaaacc
      721 gccgggcgct ggtcacgccg gccggactgc cgaaaacgaa gcaggaagcc gcagaagcca
      781 tcacccgtgg actgctgagc ttagcctcgt ccggggagct gaaaagccgt caggacgtca
      841 ctgaggctct tgaaggtgca ggttttgagg tggtgcgtac aacgaaaagc agtatcagca
      901 ttgccgaccc tgacgggggg cgaaacatcc gactgaaggg agccatctat gagcagtctt
      961 ttaacgctgg cgaaggactt agagcagcaa tcgaaagcgc agcagaagag taccggcgag
     1021 atgctgaaag ccgcattcag cgagcacgag cagtctgtca gagcggaact gaacgcaagc
     1081 gcgaggagaa tcagcgacgc catcagcgcc cacgagcaga gtatgagcga ggcgatggag
     1141 aaaaaccggc ggagcgtgtt gctgacggcc gggaggacat ggctcaccat cctgatggtg
     1201 tcagcgctgc tgatcgccac gagcgggagc attctgtggt ggcaggggca gcagataacc
     1261 gacaattaca cgcatcttcg tcagcaggaa gataccctgg cgaaaatgac cgcccggacg
     1321 tggggagtgc gctatcagga gagcagcgac ggccggaggt ttcttatcct gccgccgggg
     1381 atgcaagccg aagccatccc ctacgacggg acgacatgga tccgcctgaa acaggagtag
     1441 cggaaaatga cagagctgga aaagcagttg ctgagcgtat tagagcagct acagcaggac
     1501 tactcgcaaa ggctggacga atgggagagc gccttcgcgg aatggcggag catgtgtggt
     1561 cttatgcaac gggagaacgc ggtgctgaac gagcgcgtgt cggacttgag cacgcaggtg
     1621 ctgagtttaa gcgagcagct gcgccgcttg tccgggaact gaatgccatc gaggagaagg
     1681 ctgcactgga gtatcagcgt cagaacgagc tggagctgac gctccgacag aagcagaaga
     1741 gtttcgatgg tccgaagatg aggtgacagc ccgcacgaag aagggctcat cgcgttcctg
     1801 ctaaataggc tgactaccgg aatggtagtg acttatcccg gaggaagtga tgaaaattct
     1861 caacgttatt gaagccctgc tgaactgttt ttacctggtg atggagctgt gtgagttgcc
     1921 ggagaggcat ttgccggttt ttaaggcgtt cgcgctgatt ttagtgtgac tttacgctgc
     1981 atgcatctgg ctgcatgact atgcatcagt gtaatatcca gcggctgcgt ttttggtgtt
     2041 ttttcgtcat gtctgtcgcc actttctcgc gtctggcacc ggaaacgcag ccaaccccgt
     2101 ttctgcggtg cgggcaaggg gtgttatgtt aaaagccgag gtctggcgga tacggaaaaa
     2161 attatgcccg cggcaatccg gccgatactt aaattatcct tcacaaagga tgtgctgcga
     2221 tccaggcagt tgagtgtttt ccggctcccg gatgggagcc atttttttgc cttctgatgc
     2281 ctgttaatgc atgcggagct gcgctggttc ttccaagatt gatagacgcc agcttctctg
     2341 ctggagccgg cggatttgcc gtaaatatga acattttctt attgttcagc ccgctaaaga
     2401 tggcgggttt tttacgcgtg aaatccggag ccggacatca tgccggcatg gctgaatagc
     2461 gggctttttc ccgccctgtc gcagtaatat ataacgctac ataaggagta gccgataacc
     2521 atggcagtac ttacattatc cgggcaatct gattcatatg ttttcactta aaaatatgtt
     2581 ctccctgaac ctccagcgat cagccatttc gtatgacgca atttgtcaga ataagcctgt
     2641 cattgagttc agtccggagg gggtgataaa taaagccagc ccgctttttc tctccactat
     2701 ggggtacagg gctgatgaaa taatcggtca ccaccatcgt atattctgcc cgccctcgct
     2761 ggtaagttca ccggaataca gccagttctg gcagcgcctt gccaggggag aaagctttag
     2821 tggcaagtac ctgcggctgg caaagggaaa tcgttccgta tggcttgaag ccagttatat
     2881 ccccgtttct gacaggcgcg gccgtgttat cagagtcatt aaaattgctg ccgatatttc
     2941 tgagcgcgtg cattctgctc ttgagcagga agcagttgta aatgccataa accgttctat
     3001 ggccatcatc accttcaatc ctgaagggat cgtgcttgaa gcaaatgaaa atttcgtcaa
     3061 tgccactggc tataagcggg atgaaatcat aggtaagcat catcgtctgt tctgtgccga
     3121 gacgctttac aaaagtgatg aataccgaca tttctgggag agtctgaatc aaggtgagtt
     3181 tttttctggt ctgtttccac gccttaaccg tcagggagac cctctgtggt tccgtgcaac
     3241 ttataaccct gtctttaaca gtgatgggca gctttataaa attgtgaaat tcgctacaga
     3301 tgttacggct gatgtcctgc gaaaccagag agagcaagag gctgctgtgc atgcatggga
     3361 tatggccgtg cagacccgag aaagtgcgca gaacggtgcc aatgttattg aaaatagcat
     3421 ccttatgatt gacagaattg cgcaggggat gggggctgtc tccaccgata tctcacggct
     3481 caacaatcag tctgaaagta ttgacgatat ggtggaaacc atccggaagt ttgccatgca
     3541 gacaagactt attgcactga atgccgcgat tgaagcagca agggctggcg catccggaag
     3601 aagttttgcg gttgttgccg cagaagtgcg taatcttgcg gcgagcgtca gtagcgcgac
     3661 tgaagaaatt gagcaagtcg tggccagcaa tagtcaactg gccaaggatg ttctctgtgg
     3721 cattgaaaac agcctgatga acactcggga aggggttaca ctcatgcgcg aagcgggtga
     3781 agttatgacc agcattcaga ggaatgctgc aggggttgag actgcggtta aggatgtcgc
     3841 catttcagtt aaagccggat aggccatggt gcatatcccc atatctgtcg aacatcacag
     3901 atgatcttct tgagatcctt tccgttgcgt cgtaatctct tgctctgaaa acgaaaaaac
     3961 cacccggcaa ggtggctttt tcgaaggttc gcaagagttg acgctctttt gaaccgcggt
     4021 aactggcttg gaggagcaca gtcaccaaaa ctgtcctttc agtgtagcct tatcgcaccc
     4081 gaaacttcaa gactctcctc ctctaaacct gttaccagtg gctgctgcca gtggcgcttt
     4141 gtcgtgtttt tccggattgg actcaagttg atagttaccg gataaggcgc agcggtcgga
     4201 ctgaacgggg ggttcgtgca tacagtccag cttggagcga actgccttcc cggaactgag
     4261 tgtcaggcgt ggaatgagac aaacgcggcc ataacagcgg aa
//
