LOCUS       NZ_CP032140             5025 bp    DNA     circular CON 05-JAN-2024
DEFINITION  Acinetobacter sp. WCHAc010052 plasmid p3_010052, complete sequence.
ACCESSION   NZ_CP032140
VERSION     NZ_CP032140.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07138952
            Assembly: GCF_002165295.2
KEYWORDS    RefSeq.
SOURCE      Acinetobacter sp. WCHAc010052
  ORGANISM  Acinetobacter sp. WCHAc010052
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 5025)
  AUTHORS   Hu,Y., Long,H., Feng,Y. and Zong,Z.
  TITLE     The complete genome of Acinetobacter sp. strain WCHAc010052
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5025)
  AUTHORS   Hu,Y., Long,H., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-SEP-2018) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
REFERENCE   3  (bases 1 to 5025)
  AUTHORS   Hu,Y., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-MAY-2017) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.6
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 200.0x
            Sequencing Technology             :: Illumina HiSeq; MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/04/2024 21:10:49
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,457
            CDSs (total)                      :: 3,349
            Genes (coding)                    :: 3,319
            CDSs (with protein)               :: 3,319
            Genes (RNA)                       :: 108
            rRNAs                             :: 7, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 30
            CDSs (without protein)            :: 30
            Pseudo Genes (ambiguous residues) :: 0 of 30
            Pseudo Genes (frameshifted)       :: 10 of 30
            Pseudo Genes (incomplete)         :: 19 of 30
            Pseudo Genes (internal stop)      :: 8 of 30
            Pseudo Genes (multiple problems)  :: 6 of 30
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP032140.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5025
                     /organism="Acinetobacter sp. WCHAc010052"
                     /mol_type="genomic DNA"
                     /strain="WCHAc010052"
                     /isolation_source="Sewage"
                     /db_xref="taxon:2004647"
                     /plasmid="p3_010052"
                     /geo_loc_name="China: Sichuan, Chengdu"
                     /collection_date="2015-10-31"
     gene            complement(join(4824..5025,1..728))
                     /gene="repM"
                     /locus_tag="CDG61_RS00145"
                     /old_locus_tag="CDG61_00145"
     CDS             complement(join(4824..5025,1..728))
                     /gene="repM"
                     /locus_tag="CDG61_RS00145"
                     /old_locus_tag="CDG61_00145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004871874.1"
                     /GO_function="GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein RepM"
                     /protein_id="WP_004871874.1"
                     /translation="MKNSLVVKDNALINASYNLELTEQRLIMLAIINARESGQGITADS
                     KLEIHASDYAKLFNVSADASYKALREAVNNLFNRQFSYTAEYKKTGKVGIVRSRWVSRI
                     FYVDDLALLEITFAPDVVPLITRLEEHFTKYEAKQVAHLTSKYATRLYELLIAWREVGK
                     VPQLELSEFRNRLGLVDSEYTAMSDFKKRVLEPSIKQINEHTDITVTYEQHKKGRIISG
                     FSFKFKQKQQPKVEAKRDPNTPDFFIKMTDAQRHLFANKMSEMPEMGKYSQGTESYQQF
                     AIRIADMLLEPEKFRELYPILEKSGFQP"
                     /name="repM"
     gene            1546..1890
                     /locus_tag="CDG61_RS00150"
                     /old_locus_tag="CDG61_00150"
     CDS             1546..1890
                     /locus_tag="CDG61_RS00150"
                     /old_locus_tag="CDG61_00150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005106592.1"
                     /GO_component="GO:0016020 - membrane [Evidence IEA];
                     GO:0005886 - plasma membrane [Evidence IEA]"
                     /GO_function="GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMR family transporter"
                     /protein_id="WP_087551688.1"
                     /translation="MNSVLLAYVLLGFAIVSEVIGSTFLVKSEGFSKLFPSIMVIIIYS
                     LAFYLLSQVIKTIPLGIAYAIWGGVGIVLTTIVGYVLFKQTLDAPAMIGIVLIVSGVVI
                     INLFSQSTGH"
                     /name="SMR family transporter"
     gene            1900..2448
                     /locus_tag="CDG61_RS00155"
                     /old_locus_tag="CDG61_00155"
     CDS             1900..2448
                     /locus_tag="CDG61_RS00155"
                     /old_locus_tag="CDG61_00155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005146114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="WP_218944885.1"
                     /translation="MQQPKKQPEIIRKRILEQAATLVSQKGISGVSIQNIATAVGITKG
                     GIFHHFPNKEILIEEMFNQVILEVDQTIEYLMKQDEDEYGKFTRAYVHSAFIHQINGVV
                     SAWSAVSMTLITEPTFNKIWMEWLKNRLSQHAETDSHPNLELIRLAADGLWLQSITGVI
                     DDEQCSKLEDDLLNRTYLT"
                     /name="TetR/AcrR family transcriptional regulator"
     gene            complement(2576..3073)
                     /locus_tag="CDG61_RS00160"
                     /old_locus_tag="CDG61_00160"
     CDS             complement(2576..3073)
                     /locus_tag="CDG61_RS00160"
                     /old_locus_tag="CDG61_00160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004969149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_004856450.1"
                     /translation="MSNQNDLDDQLYILLASMKEYREAIADDKKRLEQFYNQVASGVLD
                     KAEKSLENTNKKHTGALNNSIQALNEATNRLNLKLIFIFASTFVAVMMVFILAIFLYIP
                     SKDEIDERRADMAVLKKYPLQIRESDGETLVRIMRKNCYSFEPSSVKEKTYDWCQIDPK
                     KY"
                     /name="hypothetical protein"
     gene            complement(3070..4041)
                     /gene="mobQ"
                     /locus_tag="CDG61_RS00165"
                     /old_locus_tag="CDG61_00165"
     CDS             complement(3070..4041)
                     /gene="mobQ"
                     /locus_tag="CDG61_RS00165"
                     /old_locus_tag="CDG61_00165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005265044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobQ family relaxase"
                     /protein_id="WP_004856449.1"
                     /translation="MAIYHCSTKTVNRSSGRTAVASSAYRAGEKLEDERTGLTHDFTRK
                     DGVAHSEILSNLDIEIDRGELWNLAEKTENRKDARTAREWVIALPDELDADQRKDLAKD
                     FARSLVDRYGVIADLAIHEPSKGGNDKNHHAHIMLTTRKAELDTDNKLTLTTKTDIELS
                     NAKRKSLGMGTTQDEIKQIRETWANLANHALERAGYREKIDHRSYADQNNGLQATIHEG
                     TKVTQLRRQGIDTEISRFNDNVKQQNAQQLDQQKQQKESVLQRGLNRVDQGFDQWQKNQ
                     ETKRLELERQAEMKRQQELDKQRAEQALRKAYQKLSRGGMSL"
                     /name="mobQ"
     gene            4250..4534
                     /locus_tag="CDG61_RS00175"
                     /old_locus_tag="CDG61_00175"
     CDS             4250..4534
                     /locus_tag="CDG61_RS00175"
                     /old_locus_tag="CDG61_00175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004871868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_004871868.1"
                     /translation="MTKSAENIEKKIEAQLEKLKQLKAQKQAIEARERTKKKEQERKDD
                     TRRKILLGSYLIKKMQANEANKEKILAELNEYLTENRDRQLFDLPDIEA"
                     /name="hypothetical protein"
     gene            complement(4531..4827)
                     /locus_tag="CDG61_RS00180"
                     /old_locus_tag="CDG61_00180"
     CDS             complement(4531..4827)
                     /locus_tag="CDG61_RS00180"
                     /old_locus_tag="CDG61_00180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004856442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_005265043.1"
                     /translation="MIKLNNLSTDLKHVTVEYLDIVNYEIARENICGYIFLLSRLSKNA
                     KPTEKMQMESKIQDLIYYRDHLQIEDKDNIQKVLNTLIPEYQAEQNNQTAKKN"
                     /name="hypothetical protein"
     ARG             1547..1890
                     /name="qacG"
                     /gene="qacG"
                     /gene_name="small multidrug resistance (SMR) antibiotic
                     efflux pump"
                     /tool="rgi"
                     /drug_class="disinfecting agents and antiseptics"
                     /identity="44.34"
                     /coverage="106.54"
     Typing          complement(3074..4041)
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="96.285"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 gtgtttggat ctctttttgc ttcaactttt ggctgttgtt tttgcttaaa tttgaaagaa
       61 aaacctgaaa tgatccgtcc ttttttatgc tgttcatacg ttacagtaat atcagtatgc
      121 tcattaattt gtttaattga tggttcaagc acacgctttt taaagtcact catggcggtg
      181 tattcactat caacaagacc taatctgttt ctaaactcac taagttctag ttgtggaact
      241 tttccaactt cacgccaagc aatcagcaat tcataaagcc tagtggcgta tttactggtt
      301 aggtgagcaa cttgtttagc ttcatatttt gtaaagtgtt cttccaatcg tgtgattaaa
      361 ggcactacat caggagcaaa agtaatttct aacaatgcta ggtcatctac ataaaatata
      421 cggcttaccc agcgagatcg aacaatgccg actttgcctg tttttttata ttcggctgta
      481 taactaaatt gacgattaaa cagattattt acagcttctc tcaaagcttt atatgacgca
      541 tcggcagata cattgaatag cttggcgtag tcactagcat gtatttccag tttactatcc
      601 gcagtgattc cttgtcccga ttctctagca ttaatgatag ctagcatgat caaacgttgt
      661 tccgttagct ctaggttgta actggcattt attagagcat tatctttcac gactaaacta
      721 tttttcataa gaagaactta ttattatcta attaaaggac aatgtaatct aatatctttt
      781 taaggtcaat atttataatg tcttttaatt aagagcaaat gtccgtttat acaagagcaa
      841 atgtccgttt atacaagagc aaatgtccgt ttatacaaga gcaaatgtcc gtttatatag
      901 tctgtaacac ttactacaca agggtttcaa cctgtctaaa agcattaaaa gctttaaaaa
      961 taattaaaag cctttcgaga ggggagtgct aaaaactgcc ctatgtactc gctaaagctc
     1021 gtactctatt gaagctcgtt cctcgcttcg tggggcagtt tttagttaat cctgttgtga
     1081 aatctaaaag caaaagcatt tgtaatgtat tcgcttcgct catacttttt gaaaagcaaa
     1141 agctccaaag ttcgcaccca ttcgggatgc tctgtagcta ccgtttaaaa tcgaaaggga
     1201 gcttgtaatc agagaaaagg cgagggcgaa attttgatga tgctcaatcg ctcgtagaca
     1261 ctcgctcggt tcttattatc taggttttaa ttatttactg gagctaacca aagttgtgaa
     1321 acattgctta aataataggc gtggaacgtg aaaaatccat aaaaaagccc aatcgggtgt
     1381 gattgggcta taaactagaa actacagcat tgatttctat agataattat aacgcatttc
     1441 gtataaggtg tattatgtta attttagaaa atctaaaata attattgata attttttttg
     1501 aaaatttaaa ataccttccg attggtatgt taggtatgat tacttatgaa cagtgtgtta
     1561 ctcgcttatg tattacttgg atttgcaata gtttccgaag tgattggaag cactttttta
     1621 gttaaatcag agggtttctc aaaattattt ccgagtatta tggtgataat tatatacagt
     1681 ctagctttct atctgctatc acaagttatt aaaacaatcc ctttaggtat tgcatatgcg
     1741 atatggggag gagtcggtat tgttctgact actattgttg gctacgtttt atttaaacaa
     1801 actttagatg ctccagctat gattggtatt gttttaatag tttctggagt tgttattatt
     1861 aatctattct ctcaatctac aggtcattaa gtgaaaaaaa tgcaacagcc taagaaacag
     1921 ccagaaatta ttcgaaagcg tattcttgaa caagcagcta ctcttgtttc acaaaaaggc
     1981 atttctggtg tttctattca aaatattgct acagcagtag gcatcacaaa agggggaata
     2041 ttccatcatt tccctaataa agaaatttta atagaagaaa tgtttaatca agtaattctt
     2101 gaagtagatc aaactattga atatctaatg aaacaagatg aagacgaata tggaaaattc
     2161 acacgagctt atgttcacag tgcttttatt catcaaataa atggtgtggt ttctgcatgg
     2221 tcagctgtat caatgactct aattacagag cctaccttta ataaaatttg gatggaatgg
     2281 cttaaaaata gattatcaca acatgcagaa acagacagtc atcctaattt agagttaatt
     2341 cgtttagcag cagatgggtt atggctacaa agtattaccg gagtcattga tgatgagcaa
     2401 tgttcaaaat tagaagacga tctgcttaat cgaacctatt taacataaaa tctcttatgc
     2461 gaaatttcag ctcgatgctt tgaaagatgg ctaaagccat gtttcaaagt cgggcaactt
     2521 tgcgcttgct gtaatttgat ttgtaatgag aaaaaccaag caaagtaccg atcaactagt
     2581 attttttagg gtcgatctga caccagtcat acgttttttc tttgacacta ctcggttcaa
     2641 acgagtagca atttttcctc attattctca ccaatgtttc accatcactt tctcgaattt
     2701 gtagcggata tttttttagt acagccatat ctgctctacg ttcatcaatt tcgtctttgc
     2761 ttggtatgta taaaaagata gccaaaatga acaccatcat cacagcaaca aacgtgctgg
     2821 caaaaataaa gataagtttt aagttgagcc tgtttgtagc ttcgtttaat gcctgaatac
     2881 tgttgtttaa tgcacctgta tgcttcttat ttgtgttttc tagcgatttt tcagccttgt
     2941 ctagcactcc actagcgact tggttgtaaa actgctctaa tcgcttctta tcgtctgcta
     3001 tggcttctcg atattccttc atggatgcca ataaaatata taactggtca tctaaatcat
     3061 tttgattact cataatgaca ttccgcctct acttagtttt tgatatgcct tgcggagtgc
     3121 ttgctcggct cgttgtttat ctaattcttg ctgtcgtttc atttccgctt ggcgttccag
     3181 ttctagacgt ttggtttctt ggttcttctg ccattgatca aaaccttgat cgacacggtt
     3241 taaaccacgc tgtaaaacgc tctctttctg ctgtttctgt tggtcaagct gttgggcgtt
     3301 ctgctgtttc acattgtcat taaaacggct gatttcagtg tctatgcctt gtctgcgtaa
     3361 ttgggtgact ttagtgcctt catggatggt ggcttgtagt ccgttattct gatcggcata
     3421 gctgcggtga tctatttttt ctcggtagcc tgctcgttct aatgcgtgat tggctaaatt
     3481 tgcccacgtt tcccgaatct gtttaatttc gtcttgggtt gtacccatac caaggctttt
     3541 tcgtttggcg ttgctgagtt caatatcggt tttggtggtc agggtgagtt tattgtccgt
     3601 gtccaattcg gcttttcggg tggtaagcat gatatgggcg tgatgattct tatcattacc
     3661 gcctttgctg ggttcatgga tggctaaatc tgcgatcact ccatagcgat caactaagga
     3721 cctggcaaag tcttttgcca agtccttacg ttgatcagcg tctaattcat caggtagggc
     3781 aatgacccat tctctagcgg ttcgggcatc tttacggttt tcggtttttt ctgccaagtt
     3841 ccaaagttca ccacggtcaa tttcaatatc taaattagac agaatttcag aatgggcgac
     3901 accgtctttt ctcgtaaagt catgggtcag tcctgtgcgt tcatcttcta gtttttcccc
     3961 tgcacgatat gcagatgatg caaccgcagt tcgccccgaa cttcggttca ccgttttagt
     4021 ggaacaatga taaattgcca tgcagtcgcc ttggggtgct tttgctttta aaaaattgcg
     4081 tagcagtttt ttggggttaa ggggtgtccc cttgcgcaac tttgatttga acgaagttca
     4141 agtcgtaagt gcgcatttca tgaaaaacac gatagcatat tacccgcttg aatttcaatt
     4201 catagggtct tatgcttgag tggttttcta tattccgaaa ttaaccgtta tgactaaatc
     4261 tgctgaaaat atcgaaaaga aaattgaagc ccagttagag aagctgaaac agttaaaagc
     4321 acagaaacag gctattgaag caagagaacg taccaaaaag aaagaacagg agcgcaagga
     4381 tgatactagg cgtaaaattt tgctcggttc ttacttgatt aagaaaatgc aggcaaatga
     4441 agctaataaa gaaaaaatac tcgctgaact caacgaatat ttaacagaaa atagagatcg
     4501 acagcttttt gatttgcccg acattgaagc ctaatttttc ttagctgttt ggttattctg
     4561 ttcggcttga tactcgggaa tgagcgtgtt taaaaccttt tgaatattgt ctttgtcctc
     4621 tatctgcaaa tgatcccgat agtaaattaa gtcctgtatt ttgctttcca tctgcatttt
     4681 ttcggtgggt ttggcatttt tggatagtcg ggataatagg aagatataac cgcatatatt
     4741 ttccctcgca atttcataat ttacgatgtc gaggtattca acggtcacat gctttagatc
     4801 ggttgatagg ttatttaatt taatcatggc tgaaatcctg atttttctaa aattggataa
     4861 agctctctga atttttcagg ctctaaaagc atatcagcga tacgaatagc aaattgttgg
     4921 tagctttctg taccttgtga atatttcccc atttcaggca tttctgacat tttattcgca
     4981 aataaatggc gttgtgcatc ggtcattttt ataaaaaaat caggc
//
