LOCUS       NZ_CP032008             5017 bp    DNA     circular CON 09-JAN-2024
DEFINITION  Acinetobacter haemolyticus strain 11616 plasmid pAhaem11616a,
            complete sequence.
ACCESSION   NZ_CP032008
VERSION     NZ_CP032008.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09927968
            Assembly: GCF_009892385.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter haemolyticus
  ORGANISM  Acinetobacter haemolyticus
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 5017)
  AUTHORS   Castro-Jaimes,S. and Cevallos,M.A.
  TITLE     Analysis of the genomic diversity of Mexican Acinetobacter
            haemolyticus clinical isolates
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5017)
  AUTHORS   Castro-Jaimes,S. and Cevallos,M.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-AUG-2018) Evolutionary Genomics Program, Center for
            Genomic Sciences, National Autonomous University of Mexico (UNAM),
            Av. Universidad s/n Col. Chamilpa, Cuernavaca, Morelos 62210, Mexico
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: FEB-2018
            Assembly Method                   :: Unicycler v. 0.4.1
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 483x
            Sequencing Technology             :: Illumina HiSeq and PacBio RSII
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/09/2024 02:29:05
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,488
            CDSs (total)                      :: 3,393
            Genes (coding)                    :: 3,215
            CDSs (with protein)               :: 3,215
            Genes (RNA)                       :: 95
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 73
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 178
            CDSs (without protein)            :: 178
            Pseudo Genes (ambiguous residues) :: 0 of 178
            Pseudo Genes (frameshifted)       :: 43 of 178
            Pseudo Genes (incomplete)         :: 137 of 178
            Pseudo Genes (internal stop)      :: 26 of 178
            Pseudo Genes (multiple problems)  :: 25 of 178
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP032008.1.
            Bacteria available from Submitting center.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5017
                     /organism="Acinetobacter haemolyticus"
                     /mol_type="genomic DNA"
                     /strain="11616"
                     /isolation_source="Blood culture"
                     /host="Homo sapiens"
                     /db_xref="taxon:29430"
                     /plasmid="pAhaem11616a"
                     /geo_loc_name="Mexico: Mexico City"
                     /collection_date="2012-02-03"
                     /collected_by="Instituto Nacional de Cancerologia"
     gene            complement(join(4194..5017,1..145))
                     /locus_tag="Ahae11616_RS17350"
                     /old_locus_tag="Ahae11616_17485"
     CDS             complement(join(4194..5017,1..145))
                     /locus_tag="Ahae11616_RS17350"
                     /old_locus_tag="Ahae11616_17485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005086676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_005086676.1"
                     /translation="MEQIPEFRSNFYQDLPKKPYCSYGKGTKTYIRSKKHAIQYPLIQV
                     NHVHTVQYLIFDIDAPDAYLHFFDANLPTPTWIAKNKKNGHCHVCYELKTPVCKTANAK
                     LKPLRYLASIEYTYAKKLGADLRYSGLLTKNPVDKDWEVTLLNPRPFELDELADYVDLE
                     NKPKKSENEVSGLGRNCIMFDVVRKWAYKAIRACLDDGYDSWYQKVLNMSINANGAFLD
                     PLPYSEVKATAKSIAKWVWRNHTSAEFQAWFGTKQSNRAKIGVSKGNVSKGGKARSAQY
                     SDMRQEALKLHIMGKSIKEISEYLNVHRSSVSKWLKSGKSS"
                     /name="replication initiation protein"
     gene            complement(376..666)
                     /locus_tag="Ahae11616_RS17355"
                     /old_locus_tag="Ahae11616_17490"
     CDS             complement(376..666)
                     /locus_tag="Ahae11616_RS17355"
                     /old_locus_tag="Ahae11616_17490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017394606.1"
                     /GO_function="GO:0008657 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) inhibitor activity
                     [Evidence IEA]; GO:0042803 - protein homodimerization
                     activity [Evidence IEA]"
                     /GO_process="GO:0030541 - plasmid partitioning [Evidence
                     IEA]; GO:0051290 - protein heterotetramerization [Evidence
                     IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="WP_017394606.1"
                     /translation="MPQVILTRNALNDLSRLKVFLQTKNPEAAKEAVITIRSHLKELAT
                     TPLAHVPDDERPDFRILIIPFGSSGYKAWYRYKTGEDVVIVSIKHQREDAY"
                     /name="type II toxin-antitoxin system RelE/ParE family
                     toxin"
     gene            complement(654..935)
                     /locus_tag="Ahae11616_RS17360"
                     /old_locus_tag="Ahae11616_17495"
     CDS             complement(654..935)
                     /locus_tag="Ahae11616_RS17360"
                     /old_locus_tag="Ahae11616_17495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005086675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_005086675.1"
                     /translation="MSTIALSIKLDSSYKDRLSRLATTKKRTAHALAKAAITSFIEQEE
                     RIEAERREAIASYEDYLETGLHVTLAEADEWLESWGTDNEKDAPLCHK"
                     /name="hypothetical protein"
     gene            complement(989..1267)
                     /locus_tag="Ahae11616_RS17365"
                     /old_locus_tag="Ahae11616_17500"
     CDS             complement(989..1267)
                     /locus_tag="Ahae11616_RS17365"
                     /old_locus_tag="Ahae11616_17500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005086673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_005086673.1"
                     /translation="MKDKADKKTIDMLKEPPKTGAERQKAYRQRLKEQHSAVRLDLMLD
                     SVVMAQLEGIMQVMGEGKKEVLNRLISAEFTRIVNQQDFKVSQIINQ"
                     /name="hypothetical protein"
     gene            complement(1332..3152)
                     /locus_tag="Ahae11616_RS17370"
                     /old_locus_tag="Ahae11616_17505"
     CDS             complement(1332..3152)
                     /locus_tag="Ahae11616_RS17370"
                     /old_locus_tag="Ahae11616_17505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005086671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /protein_id="WP_005086671.1"
                     /translation="MIVDFFRRGTGLSSGPIDYLLGKNRDREHACLLKGDINEVAGLID
                     TSPYIKKYTAGCLSFYEHDLRPEQKQQIMDDFEKCLFPGMTKDQYRILWVEHQDKINLD
                     TGETRLELNFLIPNVEVNSGKRLQPFYAAADLDRVECFKQITNHIHALYDPDDPANRQA
                     TKVAKALPSNTKELKAAIEIEAALAIAEGVISDRQSLIKWLGDIGVEVTRQTPKSISIK
                     HQDDEKSRPIRLTGALYEQDFRYTDESPSITAAASADYRAAATERYTASCERYDKMLAA
                     KSEYHQQRYRPQSQRDPQSPERSYDSTIAADRAEHGKDQGATAAGHDRAIAATANTDQT
                     ATSELAAVERLEPRHRTSSKYQENPYQIEYSLDFTSMYNAYQQYLSWVRQQEQIQRNTS
                     KKGTFAADRISDSAENSGIQQNHNRFIQGERGQVDELGITAIKHYRAATAAVTERIAAI
                     GSPELYNRAARAVRSELETVQRNSDKSNQAAGGDYQQAEKPTIARDFAIETTVRYTAAI
                     AAAFSEVGRTVEYRTADYQSLATIDTDRDREAARTTNRTSDRENEFSRAISAKTSRFSA
                     TPIREALERVEQRQQIEVEKKQDYDSPRPF"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(3142..3564)
                     /locus_tag="Ahae11616_RS17375"
                     /old_locus_tag="Ahae11616_17510"
     CDS             complement(3142..3564)
                     /locus_tag="Ahae11616_RS17375"
                     /old_locus_tag="Ahae11616_17510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005163993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_306386189.1"
                     /translation="MFSGTPPETPQKATALHGDIMEYKAKINHAKKRKVREHRVEVRLS
                     DDELNQLKNANASSIARLLREGALSAVNKQETQVPQFTKLDRDFLLELSRIGNNINQIA
                     KAINTDIAADRPIDAARLLHLLIGVDQTLKELRDDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            complement(3971..4183)
                     /locus_tag="Ahae11616_RS17380"
                     /old_locus_tag="Ahae11616_17515"
     CDS             complement(3971..4183)
                     /locus_tag="Ahae11616_RS17380"
                     /old_locus_tag="Ahae11616_17515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005086682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_005086682.1"
                     /translation="MDDSFESPNAKYIHEIYSDKNELEMLEADFVNIADSIDNWLEGNE
                     KIDPDICRYMGMLFLSLANELEPES"
                     /name="hypothetical protein"
ORIGIN
        1 gtacatgatt tacctgaatg agagggtact gtatggcgtg ttttttggaa cgtatgtagg
       61 ttttagtccc tttgccataa ctgcaatacg gttttttagg tagatcttga taaaaatttg
      121 accgaaattc aggaatttgt tccatttata acagtatcca cttgcaatac tcgcaaacac
      181 tgctaaaatt aagaaagttt tctggtgttc ttaatttttg agtgttttca agcctttaaa
      241 attagattcc gaagaaaaag taggtttgcc gacctacttt tttttcgcct attgaaaaat
      301 ctagcacact tcaaagcatg tgaaaagcat tgatttttcg aggtttatta taacagcaaa
      361 tagtctaaaa taagtttaat acgcatcttc tcgttgatgc ttgattgaga ctatcacaac
      421 atcctcacca gttttgtaac gataccaagc cttgtatcca cttgaaccaa aagggattat
      481 caatatccta aaatctggtc gctcatcgtc aggtacatga gccaatggtg tagtggctaa
      541 ttccttgagg tgagatcgga tagttataac cgcttcctta gccgcttctg ggttctttgt
      601 ctgcaaaaac acctttaatc ggctcaaatc attaagggcg tttctggtta aaattacttg
      661 tggcataggg gtgcatcttt ctcattgtca gttccccaac tctccagcca ctcatccgct
      721 tctgctagag ttacatgcag ccctgtttcc agataatctt catacgaggc tatagcttct
      781 ctccgctctg cctcaatgcg ctcctcttgc tcgataaaac tagtgattgc agcctttgcc
      841 aatgcgtgtg ctgtacgctt tttggtggtg gctaaacggc ttaaacggtc tttatagctt
      901 gaatcaagct tgatggacag tgctatggtg gacatggctt aattcctatt acttcaaaag
      961 gtattaccta gtatacacaa gtaaaacttt actggttaat aatttggcta accttgaaat
     1021 cttgttggtt cacaattcgg gtaaactctg ctgaaatcag gcggtttagc acctcctttt
     1081 tcccctcacc cataacctgc ataatgccct ccagttgagc catgacaaca ctatctagca
     1141 tcagatcaag gcgtactgct gagtgttgct ctttaagcct ttgtctataa gccttttgac
     1201 gctccgcccc tgtttttggt ggctctttca gcatatcaat cgttttctta tctgccttat
     1261 ctttcatatt gtcaccgtgt tacttttgat tatttaatca actatacctt acgtcaccgt
     1321 gttacacaac actaaaaggg gcgaggactg tcgtaatctt gttttttctc tacttcgatc
     1381 tgctgccgtt gctccacacg ctctaaagct tcgcggatag gcgttgcact aaatcggcta
     1441 gttttagctg atattgctcg actgaattca ttttctcgat cacttgtacg gttagtggtt
     1501 ctagctgctt ctctatctct gtctgtgtca atcgtggcaa ggctttggta atctgctgtt
     1561 ctatattcaa ctgtccgacc aacttcacta aatgctgctg caattgctgc tgtatatctg
     1621 actgtagttt caatagcaaa gtctctggca attgtgggtt tctcagcttg ttgataatct
     1681 cctcctgctg cttgattcga cttatcgctg tttcgttgaa ctgtttcaag ttctgaccgt
     1741 actgctctag ctgctcgatt gtatagctct gggcttccaa tcgctgcaat gcgctctgta
     1801 actgctgctg ttgctgctcg ataatgctta atagctgtga ttccaagctc atctacctgc
     1861 cccctctcgc cttgtataaa tcggttgtga ttttgctgta ttccgctatt ttctgctgag
     1921 tctgatattc gatctgctgc aaacgttcct tttttacttg tatttcgttg tatttgctct
     1981 tgctgacgta cccaagacaa atactgctga taagcattgt acatgctagt aaaatcaagg
     2041 ctgtattcga tctggtaagg gttttcttga tacttgctgc ttgttcgatg tcttggctca
     2101 agtcgttcaa ctgctgcaag ttcgcttgta gctgtttgat ctgtgtttgc tgttgctgca
     2161 atagctctgt catgccctgc tgctgttgcg ccttgatctt tgccgtgttc tgctcgatct
     2221 gctgcaatag tgctgtcgta gcttcgctct ggtgactgag gatctcgctg tgactgcggt
     2281 ctatatcgct gttgatggta ctcactcttt gctgcaagca tcttgtcgta tcgttcacag
     2341 cttgctgtat atcgctctgt agctgctgct cgatagtctg ctgatgctgc tgccgtaatg
     2401 cttgggcttt cgtctgtata tctaaaatcc tgctcatata acgcacctgt taaacgaatt
     2461 ggacgtgatt tttcatcatc ttggtgtttg atactgattg atttaggtgt ttgccttgtc
     2521 acttccacgc caatatcccc aagccactta ataaggctct ggcggtcgga gatcacgccc
     2581 tcagctatgg caagggctgc ttcgatttct atggctgctt tcagctcctt tgtattgctt
     2641 ggtaaggctt tggctacttt tgttgcttgc cgatttgctg ggtcatctgg gtcatataag
     2701 gcgtggatgt gatttgtaat ctgtttaaaa cactcgacac gatcaaggtc ggctgcggca
     2761 tagaatggct gtagacgctt gccactgttg acttccacat ttgggataag gaagtttaac
     2821 tccagtcggg tttcccctgt atccaggtta attttgtcct ggtgttcaac ccataaaatt
     2881 ctgtactgat ctttagtcat cccaggaaac aaacattttt caaaatcatc cataatttgt
     2941 tgtttttgct ctggtcttag gtcatgttca taaaaagaaa gacagcctgc ggtgtacttc
     3001 tttatgtacg ggctagtgtc gattaaccct gcgacttcat taatgtcacc ctttaacaga
     3061 caagcatgtt ctcggtctcg attcttgcca agcaagtaat caatcggtcc actggataaa
     3121 cctgtaccac gcctaaaaaa atcaacgatc atctctcagc tccttcaagg tctgatcaac
     3181 tcctatcaaa aggtgcaaaa gacgtgcggc atcaatcggt cgatctgctg caatatctgt
     3241 gttgattgct ttggcaatct gattgatgtt gttgccgatg cgtgacagtt caagtagaaa
     3301 gtcacggtct agtttagtga actgcggtac ttgagtttct tgtttattaa cagcactcaa
     3361 tgccccctct cgtaataatc gggcaatgct ggaggcgttg gcatttttca attgattcaa
     3421 ttcatcatct gacaaccgca cctcaacccg atgctctcgg actttccgct ttttggcgtg
     3481 gttgattttt gccttatatt ccataatgtc accgtgtaac gctgtggctt tttggggggt
     3541 ttcggggggt gtcccactga acaaggtcac gaccagtaat ttgtagcata gcgaaaaaat
     3601 acgtggttgt gtatccttgc ttacaaaacg tcaccgtgta actatctgta ttttatttaa
     3661 agattgcttg ccaccgtgtt acgaatgaat tggagagaag tttaattgag gagatggggc
     3721 aaggtcatgg acaatcgcaa gcgaacgaca aaactgatct atgcacaaac ctgatggaca
     3781 agtccgcata actcattcga gttatacgtt gacttgacca caggtattgc acacaggttt
     3841 tgtctttgcc cacaaccgtt gctcccatca ttgaataata atttttaaaa taaaaataag
     3901 agaatagcac cctagggggc tattatctga tttggctgca cttcgacatt ttgtaaagtt
     3961 atgtaaacaa ttaactctct ggttctaact cgtttgctaa agatagaaat aacattccca
     4021 tatatcggca aatatctggg tcaatctttt cattaccttc gagccagttg tctattgaat
     4081 ctgcaatatt gacaaaatcc gcttctaaca tttccaactc atttttatcg ctatatattt
     4141 catgaatata tttagcattt gggctttcaa aactatcatc catatttata ttcctagctg
     4201 cttttacctg attttaacca cttagacaca ctactgcgat gtacgtttaa atactctgaa
     4261 atttctttga tgctcttacc catgatatgc agttttaagg cttcctgacg catatcgctg
     4321 tactgtgctg acctagcttt accacctttt gacacattac ccttgctgac acctatcttc
     4381 gccctgttgg attgtttcgt accaaaccac gcctgaaact ctgcactggt atgattacgc
     4441 cacacccatt ttgcaataga ttttgcagtc gccttgactt ccgaatatgg caatgggtct
     4501 aaaaacgcac catttgcatt tatagacatg tttaatactt tttgatacca actatcataa
     4561 ccatcatcca aacacgctct aatcgcctta tacgcccatt tacgcaccac atcaaacatt
     4621 atgcagttac gtccaagccc tgaaacttca ttttcactct tttttggctt gttttctaaa
     4681 tcgacatagt ccgccagctc gtccagttca aacggtcttg gattgagtaa agtaacctcc
     4741 caatctttgt ccactggatt cttggttagc aagcctgaat atcgcaggtc tgcacctaat
     4801 tttttggcgt atgtatattc aatagaagct agataacgca agggtttcag ctttgcatta
     4861 gcagttttac aaacaggtgt ttttaactca taacaaacat ggcagtgacc attttttttg
     4921 ttcttggcta tccatgtcgg tgtaggtaaa tttgcatcaa aaaaatgtag gtaagcatca
     4981 ggtgcgtcta tatcaaaaat gagatattgc actgtat
//
