LOCUS       NZ_CP032007             5924 bp    DNA     circular CON 09-JAN-2024
DEFINITION  Acinetobacter haemolyticus strain 11616 plasmid pAhaem11616b,
            complete sequence.
ACCESSION   NZ_CP032007
VERSION     NZ_CP032007.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09927968
            Assembly: GCF_009892385.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter haemolyticus
  ORGANISM  Acinetobacter haemolyticus
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 5924)
  AUTHORS   Castro-Jaimes,S. and Cevallos,M.A.
  TITLE     Analysis of the genomic diversity of Mexican Acinetobacter
            haemolyticus clinical isolates
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5924)
  AUTHORS   Castro-Jaimes,S. and Cevallos,M.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-AUG-2018) Evolutionary Genomics Program, Center for
            Genomic Sciences, National Autonomous University of Mexico (UNAM),
            Av. Universidad s/n Col. Chamilpa, Cuernavaca, Morelos 62210, Mexico
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: FEB-2018
            Assembly Method                   :: Unicycler v. 0.4.1
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 483x
            Sequencing Technology             :: Illumina HiSeq and PacBio RSII
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/09/2024 02:29:05
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,488
            CDSs (total)                      :: 3,393
            Genes (coding)                    :: 3,215
            CDSs (with protein)               :: 3,215
            Genes (RNA)                       :: 95
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 73
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 178
            CDSs (without protein)            :: 178
            Pseudo Genes (ambiguous residues) :: 0 of 178
            Pseudo Genes (frameshifted)       :: 43 of 178
            Pseudo Genes (incomplete)         :: 137 of 178
            Pseudo Genes (internal stop)      :: 26 of 178
            Pseudo Genes (multiple problems)  :: 25 of 178
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP032007.1.
            Bacteria available from Submitting center.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5924
                     /organism="Acinetobacter haemolyticus"
                     /mol_type="genomic DNA"
                     /strain="11616"
                     /isolation_source="Blood culture"
                     /host="Homo sapiens"
                     /db_xref="taxon:29430"
                     /plasmid="pAhaem11616b"
                     /geo_loc_name="Mexico: Mexico City"
                     /collection_date="2012-02-03"
                     /collected_by="Instituto Nacional de Cancerologia"
     gene            join(5043..5924,1..12)
                     /locus_tag="Ahae11616_RS17320"
                     /old_locus_tag="Ahae11616_17455"
     CDS             join(5043..5924,1..12)
                     /locus_tag="Ahae11616_RS17320"
                     /old_locus_tag="Ahae11616_17455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005207781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage integrase N-terminal domain-containing
                     protein"
                     /protein_id="WP_160124390.1"
                     /translation="MNRLEYKLMKICDRNKDGSYTTQANRRAMLSQMTEELKSLGYKVK
                     DMQPSDLKGRHINALIKKWQEDGKSVGTIKNRMAVVRWWSEKIGKADMVKDNSTYGIEN
                     RVYVTNTDKSKTLKDIDLSGVSPYISQSLRLQDAFGLRREESMKFQPIYALDGQSVDTA
                     KHIRLKASWTKGGRARVIPITSDKQRQELKAALVLAKDGSLIPPEKTYKAHLATWEKVT
                     NALEIGQTHGLRHGYAQDRYLQLMGFPCPAVGGYRELTELEKAKDRDVRMQISEELGHS
                     RINITSIYLGSWTKGV"
                     /name="phage integrase N-terminal domain-containing
                     protein"
     gene            13..252
                     /locus_tag="Ahae11616_RS17325"
                     /old_locus_tag="Ahae11616_17460"
     CDS             13..252
                     /locus_tag="Ahae11616_RS17325"
                     /old_locus_tag="Ahae11616_17460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000510443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_160124385.1"
                     /translation="MGIAAEIREKLPTCGRCINCKLVIWDDKAELKTAQNLIKFKGLDE
                     NFYYMVRCSWLKSPVYEPQYLTTCEGKQLQKGVE"
                     /name="hypothetical protein"
     gene            252..2099
                     /locus_tag="Ahae11616_RS17330"
                     /old_locus_tag="Ahae11616_17465"
     CDS             252..2099
                     /locus_tag="Ahae11616_RS17330"
                     /old_locus_tag="Ahae11616_17465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005207778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system DNA-binding
                     domain-containing protein"
                     /protein_id="WP_160124386.1"
                     /translation="MATSFAEVMVFQAVILGPLLMGVNAGYLEQAKKRYETGTKVTPGW
                     WIKVCSWGATVYVLGFLFICWISPDFSFFPDFIKYGLLPLSVYVLICKWVSVGYTEWKP
                     VVGSGAVKKSAIVKFRDIRDRSRMWSVLNITREYGSPLICFGDSYDYESNPDDLDDKTK
                     VFTDEQMEWCENTDKARATNENRGLIVGEPGTGKSSYLVAQLIDWMQSGKSFVATDIKP
                     EIWGILKENGVFDRFGYTDWVINPTDTASHHYNIFSEAMSSAELNEILAVVIPNTDESA
                     EVFAENARRLLKAVVMELGEKASLPECQRYINRCDDVPELLKQLRQSDNEVVVSIAKDI
                     TRTAKNDNLLSSIMTSLSKAFAFLDDDRIRTSTAKSDVALKEVLLKPKQAVFLQFDQQY
                     KSTTETLFGAMVAHTLRILQSSYRKRGEVFVALDEIINCAPIPKFIDTLNTMRSAKMPT
                     FLYLQALEGLNRVYGTGADRLFMGACDFKAVYKIGDPETAKVFSNLIGVTEGTITDKNF
                     STGNNTNSVNERSMLGVSVADSYSSGKNNQEGTLIKTSMMQVIEPDEFTRLEPYRAVCI
                     YKGEATIFKMPCYHEDYPVPDRPQYPTMGEYLEYCGEAI"
                     /name="type IV secretion system DNA-binding
                     domain-containing protein"
     gene            complement(2378..2776)
                     /locus_tag="Ahae11616_RS17335"
                     /old_locus_tag="Ahae11616_17470"
     CDS             complement(2378..2776)
                     /locus_tag="Ahae11616_RS17335"
                     /old_locus_tag="Ahae11616_17470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017386458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid replication DNA-binding protein"
                     /protein_id="WP_160124387.1"
                     /translation="MARITVTQASKDFNVSRNTLYKKIKQGHLTKDANGLLDVNDLIRV
                     IGVHTENTHKNVTLNNIDVQSVNSDTQLQQAKNEIEQLKQLLAQREIFINQLQQQIADL
                     RLDKEQLYNQINQKRIEHKKSLLGRFFG"
                     /name="plasmid replication DNA-binding protein"
     gene            3116..4366
                     /locus_tag="Ahae11616_RS17340"
                     /old_locus_tag="Ahae11616_17475"
     CDS             3116..4366
                     /locus_tag="Ahae11616_RS17340"
                     /old_locus_tag="Ahae11616_17475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005207773.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_160124388.1"
                     /translation="MPKSLNLTKAPKILHFDKGVSALSEGSSVVKSVALGKLTKSQSTP
                     ENKGFQRLHSFVLQDQSAKLLPQERVCNCLKRRIDKNKNRTVMFNEAREKTNWGNLQRC
                     GSVWSCPVCAKQITEERRAEMGQLIKYWEQQEKSDIKLMTLTFSHSKDEPLKVLLRKLK
                     NAITMFFGGRQFKDLSKLCKIQYKVRSLEVTYGSNGWHPHFHILLLTHDTDDLAYAYRD
                     RLAKYWMHCCESKGLKSPSMKHGLDIRDGSYAEEYVAKWGLDYEMTKGHVKRGRKESLS
                     PFDLLQLSIEDQEIFEKLPSKLWQEFALSMKGARQLVWSRGLKKLVGIGEKSDEEIANE
                     TDEESITLREVDQITFDLLIKYQKRHEFLEWQKRDFLNGCYGSGETEQNLIALFERYIA
                     ELPPDQSEFIHVCKLLV"
                     /name="protein rep"
     gene            4725..4955
                     /locus_tag="Ahae11616_RS17345"
                     /old_locus_tag="Ahae11616_17480"
     CDS             4725..4955
                     /locus_tag="Ahae11616_RS17345"
                     /old_locus_tag="Ahae11616_17480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005207772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_160124389.1"
                     /translation="MINYELHIPTKTVKLGQQKIQVSSADQVHFDCYQIGSQRFFLYHL
                     DPLTKKETITTIPPKLAQDLINKLHLFAVFA"
                     /name="hypothetical protein"
ORIGIN
        1 aagggggtgt aaatgggaat tgcagcagaa attagagaaa agttacctac ttgcggtcgg
       61 tgtattaact gtaagttggt tatttgggat gacaaagctg agctaaaaac agctcaaaac
      121 cttataaagt ttaagggtct ggacgaaaat ttttactata tggtgcgctg ttcttggctt
      181 aaaagccctg tatacgaacc gcagtatctt acgacctgcg aaggtaagca gttacaaaag
      241 ggggttgagt gatggcgact agctttgctg aagttatggt ttttcaggca gttattcttg
      301 gccctctgtt gatgggggta aatgctggat atttagagca agcaaagaag agatatgaaa
      361 caggtactaa agtaacgcca ggatggtgga taaaagtgtg ttcctgggga gcaaccgttt
      421 atgttctcgg ctttttgttt atttgttgga taagcccaga tttttctttt ttccctgatt
      481 tcataaagta tgggcttctt cctctatctg tgtacgtgct gatttgtaag tgggtttctg
      541 ttgggtatac agaatggaag ccagtggttg gaagtggggc tgtaaagaaa agtgcaatag
      601 taaaatttcg agatattcgt gatcgatctc gtatgtggag tgttcttaat attacacgtg
      661 agtatggttc gcctcttatc tgttttggag acagctacga ttatgaatct aatccggatg
      721 atttggatga taaaactaaa gtttttacag atgaacaaat ggaatggtgt gaaaatacag
      781 acaaagcaag ggctacaaat gaaaataggg ggttaattgt tggtgagccg gggactggta
      841 aaagtagtta ccttgttgcc cagctcattg actggatgca gtcaggaaaa tcttttgttg
      901 ccactgacat caagccggag atttggggaa ttttaaagga aaatggtgtt tttgaccgtt
      961 ttgggtacac agattgggtg atcaatccga ctgatacagc aagccaccac tacaatattt
     1021 tttctgaagc aatgtcttca gcagagttga atgagatcct tgcagtggtc atccctaata
     1081 ctgatgaaag tgcagaagtt tttgctgaaa atgcccgtag acttttaaaa gcagttgtta
     1141 tggagttagg ggagaaggca agtttaccag aatgtcagcg ttatattaat cgttgtgatg
     1201 atgtgccgga gctgttaaag caacttcgcc agtctgataa tgaggtggtg gtttcaattg
     1261 ctaaggacat cacaagaaca gcaaaaaatg acaatctatt gtcatctatt atgaccagtc
     1321 taagcaaagc ttttgctttc cttgatgatg atcgtattag gacgtctacg gctaaaagtg
     1381 acgttgcttt aaaagaggtg ttgttaaagc caaagcaggc ggtttttttg cagtttgatc
     1441 agcagtataa gtcaacaaca gaaacgcttt ttggtgcaat ggtggctcat actcttcgta
     1501 tattgcagag tagctatcgt aagcgtggtg aggtttttgt agccttggat gaaattatta
     1561 attgtgctcc aattccgaag tttattgaca cgctgaatac aatgcgtagt gcaaaaatgc
     1621 cgactttcct ttatctgcaa gctcttgaag gtcttaatcg tgtctatggt acaggtgcag
     1681 acagattatt tatgggagcg tgtgatttta aggctgtata taagatcggt gatcctgaga
     1741 ctgctaaggt ttttagtaat ttgattggtg ttactgaagg gacgattacg gataaaaact
     1801 ttagtactgg taataatact aactcagtta atgaacgttc gatgctaggt gtgagtgttg
     1861 ctgattctta tagtagtgga aaaaataatc aggaaggcac acttattaaa acttcgatga
     1921 tgcaagtcat tgaacctgat gaatttacac gtttagagcc gtatcgagca gtgtgtatct
     1981 ataaagggga agccactatt tttaaaatgc cgtgttatca cgaagattat ccggttcctg
     2041 atcgcccgca gtatccaact atgggtgaat atttggaata ctgtggagaa gcgatttaaa
     2101 agccgttggt gcgctgatta ccaacggcta gggcaagtaa gtatatccta gatcggcaca
     2161 gctctgctgt gcgacaaacc cgctgacaga gcgggtttgt tgttttctat agtgaacttc
     2221 cctaaattct agataaaacc gccagtcttg gcggcttaag ctgggtgtct acccagcgac
     2281 aagcgatatt cggatgaatc cctctctgat tactgctttt tcttttttag atacacggaa
     2341 aatttgtgtt tttgggggtg attttttccg tgtattttta accgaaaaat ctgccaagca
     2401 agctcttttt atgctctatt cttttttgat tgatttggtt gtaaagctgc tctttgtcta
     2461 accgaaggtc tgcaatttgt tgttgtagtt gatttatgaa aatttctctt tgagctaata
     2521 gctgtttgag ctgttcaatt tcattttttg cttgttgtaa ctgggtgtca ctgttaacag
     2581 attgaacgtc aatattgttt agggtcacgt ttttatgtgt gttttctgtg tgtacaccga
     2641 tgacacgaat taaatcatta acatcaagca agccgtttgc atctttggtt aaatgtcctt
     2701 gctttatctt cttatatagc gtgtttcgac taacattaaa gtcttttgat gcttgtgtaa
     2761 ctgtaatacg agccatgtgt cattcaatgt ccatagtgac gtaatagcag gttacatttg
     2821 gatgtggatg atataaacct tttttccgaa gttttttatt aataaagatt taaaaatttt
     2881 atttttgata agctgaagat tcgccagtgg ttgcaatgta cttgaaacag ttgtaacttc
     2941 aatctagaac tttttaatta ttaatatgat ttgtgtaggc acaaaaaaag ccctaattct
     3001 ttggcgagag gtgggctttt catgtacaca ctgatcagca gtaagcgaat gtcagcatgc
     3061 aaagttatta taacagtaag caaacatctc gcaagtcatc aaaaggactt gagagatgcc
     3121 caaaagctta aatcttacaa aagccccaaa aatccttcat tttgataaag gcgtttctgc
     3181 gctttctgaa ggctcgtctg tagtaaaatc ggtcgccctt ggtaaactta cgaaatctca
     3241 gtccacgcct gaaaataaag gctttcagcg acttcactca tttgtgcttc aagatcaatc
     3301 tgcaaaactt ttgccacagg aacgtgtctg caattgttta aaaagacgta tagataaaaa
     3361 caaaaatcgt actgtcatgt ttaatgaggc aagggaaaaa accaactggg gcaatttgca
     3421 acgctgtgga tcggtctggt catgcccagt ttgtgctaag cagattactg aagaaagacg
     3481 tgctgagatg gggcagttaa ttaaatattg ggaacaacaa gaaaaatctg acattaaatt
     3541 aatgactttg acctttagtc attcaaaaga tgagccgttg aaagttctgt tacggaaatt
     3601 aaaaaatgcg atcacaatgt tttttggtgg tcgtcaattc aaggatttgt ccaaactttg
     3661 caagattcaa tacaaagtcc gtagtttgga agtcacttat ggttcgaacg ggtggcatcc
     3721 tcattttcat attctcttac ttacccatga tactgacgat ttagcctatg catatcgaga
     3781 ccggttagca aaatactgga tgcattgttg tgaatcgaaa ggactaaaaa gtccatctat
     3841 gaagcatgga ttagatatta gggatggttc atatgctgaa gaatatgtgg cgaagtgggg
     3901 gctagattac gagatgacta aaggtcacgt aaaacgtggc cgtaaagaat cattaagccc
     3961 gtttgatttg ctccagttgt cgattgaaga tcaggaaatt tttgagaaat tgccaagcaa
     4021 gttatggcag gaatttgccc tttctatgaa aggggcaagg cagcttgttt ggtcgagggg
     4081 tcttaaaaaa ctggtgggta ttggtgagaa atccgatgaa gaaattgcca atgaaaccga
     4141 tgaagaaagt atcactttaa gggaagttga tcagatcact tttgatctgt taatcaaata
     4201 tcaaaaacgc catgaattct tggaatggca aaaaagggat ttcctcaatg gctgctatgg
     4261 cagcggagaa actgaacaaa atttaatagc actttttgaa aggtacattg cagagctacc
     4321 ccccgatcaa agtgaattta ttcacgtttg caaattgttg gtgtagcgcg gggcggatac
     4381 cgtcactacc ggtttatcgg tagtgacggt atcggacgct gaggctatat gtggatttga
     4441 tgaagttttt ttaaattatt acttcgtgat gatatttaca agtataaaaa atagactata
     4501 atataggttc tttcttttgt cttttcatga ccttcattgc tgttttttct tttgatttca
     4561 cagcttaaat aaaactcaaa aataggagtc tatacacaca ttaaacatta acgtcttaca
     4621 cgcttaatta ttgctttcgc aactgttgta tctatttgtt ctactaaatt ttgttcgttt
     4681 actcggcaag aagaacagtt tcacttacca aaggctgact ccttatgatt aattatgaat
     4741 tacatatccc gactaaaact gtgaagttgg ggcagcaaaa aatacaagtt tcatctgctg
     4801 atcaggtgca ttttgattgt tatcaaattg gctcgcagcg gtttttttta tatcaccttg
     4861 atccattaac gaaaaaagaa acgattacga ctatccctcc aaaactggcc caagatttaa
     4921 ttaataaact gcacttattt gctgtatttg cctaattttt tacccctttt tatgcgagga
     4981 caaatgtcca aaaggacatt tgtcctcgca taaaaagggg ttcttttttt aaggttataa
     5041 aaatgaatag attagagtat aagttgatga aaatttgtga tcgaaataag gatggatcat
     5101 atacaacgca agctaatcgt agggctatgt tgtcacagat gacagaggaa ttaaaaagtc
     5161 tgggttataa agttaaggat atgcagccca gtgatttaaa gggtaggcat attaatgctt
     5221 tgatcaaaaa gtggcaagaa gatggaaaaa gtgtagggac gataaaaaat aggatggccg
     5281 ttgtgcgctg gtggtctgaa aaaatcggta aagccgatat ggtgaaagat aacagtacat
     5341 acggaataga aaatcgtgtc tatgtaacta atacagataa atcaaagact ttaaaagata
     5401 ttgatttaag tggtgtttca ccttacatca gccagtcttt gagactacaa gatgcctttg
     5461 gtcttagacg tgaagaatct atgaaatttc agcctattta tgctctcgat ggtcaatctg
     5521 ttgatactgc taaacacata cgtttaaaag cgtcatggac gaaaggcggt agagcaaggg
     5581 ttatacctat cacgagtgat aagcaacggc aagagctaaa agctgcactg gtattagcaa
     5641 aggatggttc attgatacca cctgaaaaaa cgtacaaggc ccatcttgcg acatgggaga
     5701 aggttactaa tgcccttgaa atcggccaga cacatggttt aaggcatggt tatgcccaag
     5761 atagatattt gcagttgatg ggctttcctt gccctgctgt tggtggttat agagagctga
     5821 cagagctaga aaaggctaag gatcgtgatg tacgtatgca gatcagtgaa gagctgggac
     5881 atagccgcat aaatatcacc agtatttatc ttgggtcgtg gact
//
