LOCUS       NZ_CP032001             5017 bp    DNA     circular CON 05-JAN-2024
DEFINITION  Acinetobacter haemolyticus strain INNSZ174 plasmid pAhaemINNSZ174a,
            complete sequence.
ACCESSION   NZ_CP032001
VERSION     NZ_CP032001.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09927969
            Assembly: GCF_009892365.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter haemolyticus
  ORGANISM  Acinetobacter haemolyticus
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 5017)
  AUTHORS   Castro-Jaimes,S. and Cevallos,M.A.
  TITLE     Analysis of the genomic diversity of Mexican Acinetobacter
            haemolyticus clinical isolates
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5017)
  AUTHORS   Castro-Jaimes,S. and Cevallos,M.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-AUG-2018) Evolutionary Genomics Program, Center for
            Genomic Sciences, National Autonomous University of Mexico (UNAM),
            Av. Universidad s/n Col. Chamilpa, Cuernavaca, Morelos 62210, Mexico
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: MAR-2018
            Assembly Method                   :: Unicycler v. 0.4.1
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 259x
            Sequencing Technology             :: Illumina MiSeq and PacBio RSII
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/05/2024 04:23:32
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,431
            CDSs (total)                      :: 3,339
            Genes (coding)                    :: 3,208
            CDSs (with protein)               :: 3,208
            Genes (RNA)                       :: 92
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 70
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 131
            CDSs (without protein)            :: 131
            Pseudo Genes (ambiguous residues) :: 0 of 131
            Pseudo Genes (frameshifted)       :: 29 of 131
            Pseudo Genes (incomplete)         :: 97 of 131
            Pseudo Genes (internal stop)      :: 21 of 131
            Pseudo Genes (multiple problems)  :: 14 of 131
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP032001.1.
            Bacteria available from Submitting center.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5017
                     /organism="Acinetobacter haemolyticus"
                     /mol_type="genomic DNA"
                     /strain="INNSZ174"
                     /host="Homo sapiens"
                     /db_xref="taxon:29430"
                     /plasmid="pAhaemINNSZ174a"
                     /geo_loc_name="Mexico: Mexico City"
                     /collection_date="1998-05-21"
                     /collected_by="Instituto Nacional de Ciencias Medicas y
                     Nutricion Salvador Zubiran"
     gene            complement(join(4179..5017,1..982))
                     /locus_tag="AhaeINNSZ174_RS17295"
                     /old_locus_tag="AhaeINNSZ174_17215"
     CDS             complement(join(4179..5017,1..982))
                     /locus_tag="AhaeINNSZ174_RS17295"
                     /old_locus_tag="AhaeINNSZ174_17215"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /protein_id="WP_005086671.1"
                     /translation="MIVDFFRRGTGLSSGPIDYLLGKNRDREHACLLKGDINEVAGLID
                     TSPYIKKYTAGCLSFYEHDLRPEQKQQIMDDFEKCLFPGMTKDQYRILWVEHQDKINLD
                     TGETRLELNFLIPNVEVNSGKRLQPFYAAADLDRVECFKQITNHIHALYDPDDPANRQA
                     TKVAKALPSNTKELKAAIEIEAALAIAEGVISDRQSLIKWLGDIGVEVTRQTPKSISIK
                     HQDDEKSRPIRLTGALYEQDFRYTDESPSITAAASADYRAAATERYTASCERYDKMLAA
                     KSEYHQQRYRPQSQRDPQSPERSYDSTIAADRAEHGKDQGATAAGHDRAIAATANTDQT
                     ATSELAAVERLEPRHRTSSKYQENPYQIEYSLDFTSMYNAYQQYLSWVRQQEQIQRNTS
                     KKGTFAADRISDSAENSGIQQNHNRFIQGERGQVDELGITAIKHYRAATAAVTERIAAI
                     GSPELYNRAARAVRSELETVQRNSDKSNQAAGGDYQQAEKPTIARDFAIETTVRYTAAI
                     AAAFSEVGRTVEYRTADYQSLATIDTDRDREAARTTNRTSDRENEFSRAISAKTSRFSA
                     TPIREALERVEQRQQIEVEKKQDYDSPRPF"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(972..1334)
                     /locus_tag="AhaeINNSZ174_RS17300"
                     /old_locus_tag="AhaeINNSZ174_17220"
     CDS             complement(972..1334)
                     /locus_tag="AhaeINNSZ174_RS17300"
                     /old_locus_tag="AhaeINNSZ174_17220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005163993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_017394605.1"
                     /translation="MEYKAKINHAKKRKVREHRVEVRLSDDELNQLKNANASSIARLLR
                     EGALSAVNKQETQVPQFTKLDRDFLLELSRIGNNINQIAKAINTDIAADRPIDAARLLH
                     LLIGVDQTLKELRDDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            complement(1801..2013)
                     /locus_tag="AhaeINNSZ174_RS17100"
                     /old_locus_tag="AhaeINNSZ174_17225"
     CDS             complement(1801..2013)
                     /locus_tag="AhaeINNSZ174_RS17100"
                     /old_locus_tag="AhaeINNSZ174_17225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005086682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_005086682.1"
                     /translation="MDDSFESPNAKYIHEIYSDKNELEMLEADFVNIADSIDNWLEGNE
                     KIDPDICRYMGMLFLSLANELEPES"
                     /name="hypothetical protein"
     gene            complement(2024..2992)
                     /locus_tag="AhaeINNSZ174_RS17105"
                     /old_locus_tag="AhaeINNSZ174_17230"
     CDS             complement(2024..2992)
                     /locus_tag="AhaeINNSZ174_RS17105"
                     /old_locus_tag="AhaeINNSZ174_17230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005086676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_005086676.1"
                     /translation="MEQIPEFRSNFYQDLPKKPYCSYGKGTKTYIRSKKHAIQYPLIQV
                     NHVHTVQYLIFDIDAPDAYLHFFDANLPTPTWIAKNKKNGHCHVCYELKTPVCKTANAK
                     LKPLRYLASIEYTYAKKLGADLRYSGLLTKNPVDKDWEVTLLNPRPFELDELADYVDLE
                     NKPKKSENEVSGLGRNCIMFDVVRKWAYKAIRACLDDGYDSWYQKVLNMSINANGAFLD
                     PLPYSEVKATAKSIAKWVWRNHTSAEFQAWFGTKQSNRAKIGVSKGNVSKGGKARSAQY
                     SDMRQEALKLHIMGKSIKEISEYLNVHRSSVSKWLKSGKSS"
                     /name="replication initiation protein"
     gene            complement(3223..3513)
                     /locus_tag="AhaeINNSZ174_RS17110"
                     /old_locus_tag="AhaeINNSZ174_17235"
     CDS             complement(3223..3513)
                     /locus_tag="AhaeINNSZ174_RS17110"
                     /old_locus_tag="AhaeINNSZ174_17235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017394606.1"
                     /GO_function="GO:0008657 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) inhibitor activity
                     [Evidence IEA]; GO:0042803 - protein homodimerization
                     activity [Evidence IEA]"
                     /GO_process="GO:0030541 - plasmid partitioning [Evidence
                     IEA]; GO:0051290 - protein heterotetramerization [Evidence
                     IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="WP_017394606.1"
                     /translation="MPQVILTRNALNDLSRLKVFLQTKNPEAAKEAVITIRSHLKELAT
                     TPLAHVPDDERPDFRILIIPFGSSGYKAWYRYKTGEDVVIVSIKHQREDAY"
                     /name="type II toxin-antitoxin system RelE/ParE family
                     toxin"
     gene            complement(3501..3782)
                     /locus_tag="AhaeINNSZ174_RS17115"
                     /old_locus_tag="AhaeINNSZ174_17240"
     CDS             complement(3501..3782)
                     /locus_tag="AhaeINNSZ174_RS17115"
                     /old_locus_tag="AhaeINNSZ174_17240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005086675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_005086675.1"
                     /translation="MSTIALSIKLDSSYKDRLSRLATTKKRTAHALAKAAITSFIEQEE
                     RIEAERREAIASYEDYLETGLHVTLAEADEWLESWGTDNEKDAPLCHK"
                     /name="hypothetical protein"
     gene            complement(3836..4114)
                     /locus_tag="AhaeINNSZ174_RS17120"
                     /old_locus_tag="AhaeINNSZ174_17245"
     CDS             complement(3836..4114)
                     /locus_tag="AhaeINNSZ174_RS17120"
                     /old_locus_tag="AhaeINNSZ174_17245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005086673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_005086673.1"
                     /translation="MKDKADKKTIDMLKEPPKTGAERQKAYRQRLKEQHSAVRLDLMLD
                     SVVMAQLEGIMQVMGEGKKEVLNRLISAEFTRIVNQQDFKVSQIINQ"
                     /name="hypothetical protein"
ORIGIN
        1 catgccctgc tgctgttgcg ccttgatctt tgccgtgttc tgctcgatct gctgcaatag
       61 tgctgtcgta gcttcgctct ggtgactgag gatctcgctg tgactgcggt ctatatcgct
      121 gttgatggta ctcactcttt gctgcaagca tcttgtcgta tcgttcacag cttgctgtat
      181 atcgctctgt agctgctgct cgatagtctg ctgatgctgc tgccgtaatg cttgggcttt
      241 cgtctgtata tctaaaatcc tgctcatata acgcacctgt taaacgaatt ggacgtgatt
      301 tttcatcatc ttggtgtttg atactgattg atttaggtgt ttgccttgtc acttccacgc
      361 caatatcccc aagccactta ataaggctct ggcggtcgga gatcacgccc tcagctatgg
      421 caagggctgc ttcgatttct atggctgctt tcagctcctt tgtattgctt ggtaaggctt
      481 tggctacttt tgttgcttgc cgatttgctg ggtcatctgg gtcatataag gcgtggatgt
      541 gatttgtaat ctgtttaaaa cactcgacac gatcaaggtc ggctgcggca tagaatggct
      601 gtagacgctt gccactgttg acttccacat ttgggataag gaagtttaac tccagtcggg
      661 tttcccctgt atccaggtta attttgtcct ggtgttcaac ccataaaatt ctgtactgat
      721 ctttagtcat cccaggaaac aaacattttt caaaatcatc cataatttgt tgtttttgct
      781 ctggtcttag gtcatgttca taaaaagaaa gacagcctgc ggtgtacttc tttatgtacg
      841 ggctagtgtc gattaaccct gcgacttcat taatgtcacc ctttaacaga caagcatgtt
      901 ctcggtctcg attcttgcca agcaagtaat caatcggtcc actggataaa cctgtaccac
      961 gcctaaaaaa atcaacgatc atctctcagc tccttcaagg tctgatcaac tcctatcaaa
     1021 aggtgcaaaa gacgtgcggc atcaatcggt cgatctgctg caatatctgt gttgattgct
     1081 ttggcaatct gattgatgtt gttgccgatg cgtgacagtt caagtagaaa gtcacggtct
     1141 agtttagtga actgcggtac ttgagtttct tgtttattaa cagcactcaa tgccccctct
     1201 cgtaataatc gggcaatgct ggaggcgttg gcatttttca attgattcaa ttcatcatct
     1261 gacaaccgca cctcaacccg atgctctcgg actttccgct ttttggcgtg gttgattttt
     1321 gccttatatt ccataatgtc accgtgtaac gctgtggctt tttggggggt ttcggggggt
     1381 gtcccactga acaaggtcac gaccagtaat ttgtagcata gcgaaaaaat acgtggttgt
     1441 gtatccttgc ttacaaaacg tcaccgtgta actatctgta ttttatttaa agattgcttg
     1501 tcaccgtgtt acgaatgaat tggagagaag tttaattgag gagatggggc aaggtcatgg
     1561 acaatcgcaa gcgaacgaca aaactgatct atgcacaaac ctgatggaca agtccgcata
     1621 actcattcga gttatacgtt gacttgacca caggtattgc acacaggttt tgtctttgcc
     1681 cacaaccgtt gctcccatca ttgaataata atttttaaaa taaaaataag agaaaagcac
     1741 cctagggggc tattatctga tttggctgca cttcgacatt ttgtaaagtt atgtaaacaa
     1801 ttaactctct ggttctaact cgtttgctaa agatagaaat aacattccca tatatcggca
     1861 aatatctggg tcaatctttt cattaccttc gagccagttg tctattgaat ctgcaatatt
     1921 gacaaaatcc gcttctaaca tttccaactc atttttatcg ctatatattt catgaatata
     1981 tttagcattt gggctttcaa aactatcatc catatttata ttcctagctg cttttacctg
     2041 attttaacca cttagacaca ctactgcgat gtacgtttaa atactctgaa atttctttga
     2101 tgctcttacc catgatatgc agttttaagg cttcctgacg catatcgctg tactgtgctg
     2161 acctagcttt accacctttt gacacattac ccttgctgac acctatcttc gccctgttgg
     2221 attgtttcgt accaaaccac gcctgaaact ctgcactggt atgattacgc cacacccatt
     2281 ttgcaataga ttttgcagtc gccttgactt ccgaatatgg caatgggtct aaaaacgcac
     2341 catttgcatt tatagacatg tttaatactt tttgatacca actatcataa ccatcatcca
     2401 aacacgctct aatcgcctta tacgcccatt tacgcaccac atcaaacatt atgcagttac
     2461 gtccaagccc tgaaacttca ttttcactct tttttggctt gttttctaaa tcgacatagt
     2521 ccgccagctc gtccagttca aacggtcttg gattgagtaa agtaacctcc caatctttgt
     2581 ccactggatt cttggttagc aagcctgaat atcgcaggtc tgcacctaat tttttggcgt
     2641 atgtatattc aatagaagct agataacgca agggtttcag ctttgcatta gcagttttac
     2701 aaacaggtgt ttttaactca taacaaacat ggcagtgacc attttttttg ttcttggcta
     2761 tccatgtcgg tgtaggtaaa tttgcatcaa aaaaatgtag gtaagcatca ggtgcgtcta
     2821 tatcaaaaat gagatattgc actgtatgta catgatttac ctgaatgaga gggtactgta
     2881 tggcgtgttt tttggaacgt atgtaggttt tagtcccttt gccataactg caatacggtt
     2941 ttttaggtag atcttgataa aaatttgacc gaaattcagg aatttgttcc atttataaca
     3001 gtatccactt gcaatactcg caaacactgc taaaattaag aaagttttct ggtgttctta
     3061 atttttgagt gttttcaagc ctttaaaatt agattccgaa gaaaaagtag gtttgccgac
     3121 ctactttttt ttcgcctatt gaaaaatcta gcacacttca aagcatgtga aaagcattga
     3181 tttttcgagg tttattataa cagcaaatag tctaaaataa gtttaatacg catcttctcg
     3241 ttgatgcttg attgagacta tcacaacatc ctcaccagtt ttgtaacgat accaagcctt
     3301 gtatccactt gaaccaaaag ggattatcaa tatcctaaaa tctggtcgct catcgtcagg
     3361 tacatgagcc aatggtgtag tggctaattc cttgaggtga gatcggatag ttataaccgc
     3421 ttccttagcc gcttctgggt tctttgtctg caaaaacacc tttaatcggc tcaaatcatt
     3481 aagggcgttt ctggttaaaa ttacttgtgg cataggggtg catctttctc attgtcagtt
     3541 ccccaactct ccagccactc atccgcttct gctagagtta catgcagccc tgtttccaga
     3601 taatcttcat acgaggctat agcttctctc cgctctgcct caatgcgctc ctcttgctcg
     3661 ataaaactag tgattgcagc ctttgccaat gcgtgtgctg tacgcttttt ggtggtggct
     3721 aaacggctta aacggtcttt atagcttgaa tcaagcttga tggacagtgc tatggtggac
     3781 atggcttaat tcctattact tcaaaaggta ttacctagta tacacaagta aaactttact
     3841 ggttaataat ttggctaacc ttgaaatctt gttggttcac aattcgggta aactctgctg
     3901 aaatcaggcg gtttagcacc tcctttttcc cctcacccat aacctgcata atgccctcca
     3961 gttgagccat gacaacacta tctagcatca gatcaaggcg tactgctgag tgttgctctt
     4021 taagcctttg tctataagcc ttttgacgct ccgcccctgt ttttggtggc tctttcagca
     4081 tatcaatcgt tttcttatct gccttatctt tcatattgtc accgtgttac ttttgattat
     4141 ttaatcaact ataccttacg tcaccgtgtt acacaacact aaaaggggcg aggactgtcg
     4201 taatcttgtt ttttctctac ttcgatctgc tgccgttgct ccacacgctc taaagcttcg
     4261 cggataggcg ttgcactaaa tcggctagtt ttagctgata ttgctcgact gaattcattt
     4321 tctcgatcac ttgtacggtt agtggttcta gctgcttctc tatctctgtc tgtgtcaatc
     4381 gtggcaaggc tttggtaatc tgctgttcta tattcaactg tccgaccaac ttcactaaat
     4441 gctgctgcaa ttgctgctgt atatctgact gtagtttcaa tagcaaagtc tctggcaatt
     4501 gtgggtttct cagcttgttg ataatctcct cctgctgctt gattcgactt atcgctgttt
     4561 cgttgaactg tttcaagttc tgaccgtact gctctagctg ctcgattgta tagctctggg
     4621 cttccaatcg ctgcaatgcg ctctgtaact gctgctgttg ctgctcgata atgcttaata
     4681 gctgtgattc caagctcatc tacctgcccc ctctcgcctt gtataaatcg gttgtgattt
     4741 tgctgtattc cgctattttc tgctgagtct gatattcgat ctgctgcaaa cgttcctttt
     4801 ttacttgtat ttcgttgtat ttgctcttgc tgacgtaccc aagacaaata ctgctgataa
     4861 gcattgtaca tgctagtaaa atcaaggctg tattcgatct ggtaagggtt ttcttgatac
     4921 ttgctgcttg ttcgatgtct tggctcaagt cgttcaactg ctgcaagttc gcttgtagct
     4981 gtttgatctg tgtttgctgt tgctgcaata gctctgt
//
