LOCUS       NZ_CP031997             4280 bp    DNA     circular CON 28-NOV-2023
DEFINITION  Acinetobacter haemolyticus strain 2126ch plasmid pAhaem2126cha,
            complete sequence.
ACCESSION   NZ_CP031997
VERSION     NZ_CP031997.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09927970
            Assembly: GCF_009892345.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter haemolyticus
  ORGANISM  Acinetobacter haemolyticus
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 4280)
  AUTHORS   Castro-Jaimes,S. and Cevallos,M.A.
  TITLE     Analysis of the genomic diversity of Mexican Acinetobacter
            haemolyticus clinical isolates
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4280)
  AUTHORS   Castro-Jaimes,S. and Cevallos,M.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-AUG-2018) Evolutionary Genomics Program, Center for
            Genomic Sciences, National Autonomous University of Mexico (UNAM),
            Av. Universidad s/n Col. Chamilpa, Cuernavaca, Morelos 62210, Mexico
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: AUG-2018
            Assembly Method                   :: Unicycler v. 0.4.1
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 86x
            Sequencing Technology :: Illumina MiSeq and PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/28/2023 04:02:48
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,549
            CDSs (total)                      :: 3,458
            Genes (coding)                    :: 3,272
            CDSs (with protein)               :: 3,272
            Genes (RNA)                       :: 91
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 69
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 186
            CDSs (without protein)            :: 186
            Pseudo Genes (ambiguous residues) :: 0 of 186
            Pseudo Genes (frameshifted)       :: 45 of 186
            Pseudo Genes (incomplete)         :: 144 of 186
            Pseudo Genes (internal stop)      :: 26 of 186
            Pseudo Genes (multiple problems)  :: 26 of 186
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP031997.1.
            Bacteria available from Submitting center.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4280
                     /organism="Acinetobacter haemolyticus"
                     /mol_type="genomic DNA"
                     /strain="2126ch"
                     /isolation_source="Ascites liquid"
                     /host="Homo sapiens"
                     /db_xref="taxon:29430"
                     /plasmid="pAhaem2126cha"
                     /geo_loc_name="Mexico: Mexico City"
                     /collection_date="2011-02-16"
                     /collected_by="Instituto Nacional de Cancerologia"
     gene            complement(join(3665..4280,1..998))
                     /gene="mobQ"
                     /locus_tag="Ahae2126ch_RS18020"
     CDS             complement(join(3665..4280,1..998))
                     /gene="mobQ"
                     /locus_tag="Ahae2126ch_RS18020"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="MobQ family relaxase"
                     /protein_id="WP_151766072.1"
                     /translation="MAIYHFSVKAISRGAGRSAVACAAYRSGEKLVCDYYGIEQDYTKK
                     SGVEFTNIYAPENTKKELLDRQKLWNAVEKSERRKDALLAREFEIAFPKELSQEQRQAL
                     LDELCQGIVKKHGVVVDAAIHVPHVGGGSDERNYHAHVMFTTRAIDKNGTFEAKKYRDF
                     SRDHGTKTVTEWRAAFADLVNAKLEQIGSKERVTHLSYADLGNGLEATQHEGYEVTQQR
                     RRYEAEQQKNEEDRDLAIIMPDVAMSNDAIKQRNADRYRDDQEIKGLDQEIIVSKAIVS
                     DLQQSKAKSDAEHAQQQQIALERKRERLEAQSLADAHKRATDFHTAFDPNHPDKSLVTQ
                     YITDYALLARHGKQPQPPAPVEQPQPTWWQRMTGQQPQQIEPPPFFEIDAIKAIVQSIV
                     EHEQKQAQQQKWQRLQEFLQHSPRTVDRLERDAISRSFDKGQQAGDEELAEFIKYHRQH
                     WQEKEQAAKDWQAEHDRFMREEAAKAREEAALTLQRERESEAKLEAYRERKAEIAEMQQ
                     KPVNRDEIQQQPRPKNDFEP"
                     /name="mobQ"
     gene            1222..1524
                     /locus_tag="Ahae2126ch_RS17695"
                     /old_locus_tag="Ahae2126ch_17880"
     CDS             1222..1524
                     /locus_tag="Ahae2126ch_RS17695"
                     /old_locus_tag="Ahae2126ch_17880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005320422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_005320422.1"
                     /translation="MTDEKEPKPKLTLEQKIEQQEQKLKQLKAQKQAAEAREKARKKEQ
                     DRKDDTRIKILLGSYLKKKMDSNPDFNSQILDELENYLTAERDRKLFGLSPLDQG"
                     /name="hypothetical protein"
     gene            complement(1515..1787)
                     /locus_tag="Ahae2126ch_RS17700"
                     /old_locus_tag="Ahae2126ch_17885"
     CDS             complement(1515..1787)
                     /locus_tag="Ahae2126ch_RS17700"
                     /old_locus_tag="Ahae2126ch_17885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004676351.1"
                     /GO_function="GO:0008657 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) inhibitor activity
                     [Evidence IEA]; GO:0042803 - protein homodimerization
                     activity [Evidence IEA]"
                     /GO_process="GO:0030541 - plasmid partitioning [Evidence
                     IEA]; GO:0051290 - protein heterotetramerization [Evidence
                     IEA]; GO:0009432 - SOS response [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="WP_004676351.1"
                     /translation="MLIVKWQPTAVEDLEAIIDYIANHNTVAAYDLEDHILQSAEDLAE
                     HPYKGRNGRRAGTRELLVHPNYWLVYEVSDLIRITNVIHTSRLYP"
                     /name="type II toxin-antitoxin system RelE/ParE family
                     toxin"
     gene            complement(1774..1962)
                     /locus_tag="Ahae2126ch_RS17705"
                     /old_locus_tag="Ahae2126ch_17890"
     CDS             complement(1774..1962)
                     /locus_tag="Ahae2126ch_RS17705"
                     /old_locus_tag="Ahae2126ch_17890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004676352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_004676352.1"
                     /translation="MNTRFDPIVSEFESSDHEAEYNAWFIAKVEKSLADSRPTIPHDQV
                     VARMKKRREEREASANR"
                     /name="hypothetical protein"
     gene            complement(2026..3030)
                     /gene="repM"
                     /locus_tag="Ahae2126ch_RS17710"
                     /old_locus_tag="Ahae2126ch_17895"
     CDS             complement(2026..3030)
                     /gene="repM"
                     /locus_tag="Ahae2126ch_RS17710"
                     /old_locus_tag="Ahae2126ch_17895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005404019.1"
                     /GO_function="GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein RepM"
                     /protein_id="WP_032859646.1"
                     /translation="MLVVKDNALINASYNLELVEQRLILLAIIEARETGKGINANDALT
                     IHASSYIQNFNVQKHTAYGALKDACRDLFSRQFSYQELSPKGNVINQTSRWVSQIGYIQ
                     EEGSVQLIFAPAVVPLITQLEQQFTSYDLEQVSTLKSKYATRLYEILISWRSVGKTPMI
                     GLEELRGKLGLGVNDYKLLANFKLRVLELALEQINEHTDIFVKYEQHKKGRSIIGFSFK
                     FKQKQQSKIEKPIDQKRDPKTVDMFTGKTDAETKNIARAVVKDTSPPANPLLHRASRIT
                     TSIITHKLHERFKHGDEGLSSTLKRIQGEIMEGGEETADYWQSKLEDFGINFD"
                     /name="repM"
ORIGIN
        1 gggtgattgg ggtcgaacgc tgtatgaaaa tctgtagctc gcttgtgtgc atcagctaga
       61 gattgtgcct ctaaacgctc tcttttgcgt tctaaagcga tttgttgctg ttgagcatgt
      121 tctgcatcac ttttggcttt agattgctgt aaatcgctta caatcgcttt tgagactata
      181 atctcctgat ctagcccctt aatctcctga tcatcgcggt atctatcagc gttgcgctgt
      241 ttgatcgcat cgtttgacat tgcaacatcg ggcataatga tggcaaggtc acgatcttct
      301 tcattttttt gttgttctgc ttcgtatctt cttctttgct gtgtaacctc gtagccctcg
      361 tgctgcgtgg cttctagccc atttccaagg tcagcataac tcagatgggt tacacgctct
      421 ttagagccga tttgctccag ttttgcgttt actaggtcgg caaatgctgc acgccattcg
      481 gtaacggttt ttgtcccatg atccctgctg aaatcacggt acttcttggc ttcaaacgtc
      541 ccatttttat caatagctct ggtcgtaaac atgacatggg cgtgatagtt acgttcgtca
      601 gatccaccac caacgtgggg gacgtgtatt gctgcgtcta caacgacacc atgttttttt
      661 acaatgccct ggcataactc atcgagtagg gcttgccgtt gttcctggct caactctttg
      721 ggaaaagcaa tttcaaactc tcttgccagt aaagcatctt ttctgcgctc agatttttct
      781 acggcattcc acaatttttg gcggtctaat aattcttttt ttgtgttttc aggtgcataa
      841 atatttgtaa attcaacacc tgattttttt gtgtaatcct gctctatccc ataatagtca
      901 cataccaatt tttcacctga acgataggca gcacaagcaa cggcactacg tcctgcacct
      961 ctgctaatcg ctttcactga aaaatgataa attgccatat ttgcttttgc tcttatttcg
     1021 ctttagcgaa atacaaattg aggaacgaaa tttgtcaggg ggtaaagggg ggtttcccct
     1081 ttcgcaccat taatccatac gaagtatatg gattaatggc taagtgcgcc cttacgggat
     1141 tctttgagta tcatataacg tcttgaacgc cagttcaaac gggattatga tcgagaagaa
     1201 tacttgatat tggaaaagag catgacagac gaaaaagagc caaagccaaa gctaacttta
     1261 gaacagaaaa ttgaacagca agagcaaaaa ctaaagcagc taaaggcaca aaaacaagct
     1321 gctgaagcaa gagaaaaggc acgtaaaaaa gagcaggata gaaaagacga cacacgtata
     1381 aaaattttac tcggttctta tctgaagaaa aaaatggata gtaacccaga tttcaattct
     1441 caaattttag atgaactgga aaactatctg acagccgaac gagatagaaa actgtttgga
     1501 ctatcccctc ttgatcaggg atagagtcta ctcgtatgta ttacattggt aatgcgaatc
     1561 aggtctgaaa cctcatagac taaccaataa tttggatgga caagtaactc tcttgttcct
     1621 gctcttcgac cattacgccc tttgtatggg tgttctgcca aatcttcagc agattgtaga
     1681 atatggtctt ctaggtcata tgcggcaaca gtattatggt tggcgatata gtcaattatt
     1741 gcttccaaat cttctactgc ggttggttgc cacttaacga ttagcactgg cttctctttc
     1801 ctcacgacgt tttttcatac gtgccactac ttggtcatgg ggaatggtgg ggcgtgaatc
     1861 ggctagtgat ttctcaactt ttgcaataaa ccacgcattg tattctgctt catgatcaga
     1921 actttcaaac tctgacacga taggatcaaa ccttgtattc atagttggta ctccaattat
     1981 tcgctcaagt ttactgcttt acggtacaaa aatcatgggt attttttaat caaaatttat
     2041 cccaaaatcc tcaagtttcg attgccagta gtctgccgtt tcctcccctc cctccataat
     2101 ttcgccttga atacgcttca atgtactaga taaaccctca tcgccatgtt tgaaacgttc
     2161 gtgcagttta tgggtgataa ttgacgttgt gatacgactt gccctatgca acaagggatt
     2221 cgcaggcggt gaggtgtctt taacaactgc tctagctatg ttttttgtct cagcatcagt
     2281 tttacctgtg aacatatcaa cggtctttgg atctcgcttc tgatcaatcg gtttttcaat
     2341 ttttgactgt tgtttttgtt taaacttgaa tgaaaagcca ataatgctac gtcctttttt
     2401 atgctgctcg tattttacaa aaatgtctgt atgttcatta atctgttcaa gtgcaagctc
     2461 taatacccgt aatttaaagt ttgctaaaag cttatagtca ttaacaccta gtcctagttt
     2521 tcctctcagt tcctctagcc ctatcattgg tgttttgcct acgctacgcc atgaaataag
     2581 tatttcatac aagcgagttg catacttgct tttaagagtt gagacttgct ctaggtcgta
     2641 actggtaaac tgctgttcta actgtgtaat aagtggaaca acggcaggag cgaagattag
     2701 ttgtacacta ccttcctcct gaatataacc aatttggctc acccaccttg atgtctgatt
     2761 tataacatta cctttcggtg ataactcttg ataactaaat tgccttgaaa ataggtctcg
     2821 gcaagcatct ttcaacgcac cataggctgt atgcttttga acattaaaat tttgaatata
     2881 acttgaggca tggatggtta aggcatcatt ggcattaatt ccctttcctg tttctcttgc
     2941 ttcaataatt gctaataaaa tcaatctttg ttcgactaac tctaaattat aactggcgtt
     3001 aattaacgca ttatctttga ctaccaacat atcggctgtt cctcgtggtg gtgcatttgc
     3061 tttctggatt gaggtcattt tgttggtact ccaagagaca tatacttgcc ttgtatgtta
     3121 tataggcata caaataaatt tatgtaaata tataacatta atttatttgt atatatatgg
     3181 tcggtaaacg tatatatatg ggtcggtaaa cgtatatata tgggtcggta aacgtatata
     3241 tatgggtcgg taaacgtata tatataatct ctgaaatcat tactagataa ggctttcagc
     3301 tcgtctaaaa gcttttaaaa gcattaaaag cattaaaagc ccaaaagcac tacaaaaact
     3361 gccctatgac actcgcttcg ctcgtggcat tttgacctcg cttcactcgg tctgaggggc
     3421 agtttttagc aaataccatc tagggcgttg ggaaaagcaa aagcgcacga aatccaataa
     3481 aatcgagggt tctgggctgt taataagatg agatacgcca aaatcagcac acaaaatagt
     3541 tactttctag gggcgaaaac cgtaaaaagc ggtttttcag aggggcaagg ggcgaaattt
     3601 tggttattcg ctcgtagaca ctcgctctgt aaactgttct tattatttag aaaaaataaa
     3661 taatctatgg ctcaaagtca tttttagggc gtggctgttg ttgtatctca tccctattaa
     3721 caggcttttg ctgcatttca gctatttccg ctttgcgctc tctgtacgct tcaagtttgg
     3781 cttctgactc acgctctctt tgtagtgtga gtgcagcttc ttcccttgct ttagctgctt
     3841 cctcacgcat aaagcggtca tgctcggctt gccagtcttt agctgcctgc tctttttcct
     3901 gccagtgctg acgatggtat ttgatgaact cggcaagttc ttcatcgcct gcctgttgtc
     3961 ccttatcaaa cgatctgctg atagcatctc gctcaagtcg gtctacggtg cgaggggagt
     4021 gttgtaaaaa ctcttgtaac cgttgccatt tctgctgttg agcctgtttt tgctcatgct
     4081 caacaatgga ctggactata gctttgatcg catcaatttc aaaaaatggc ggtggttcaa
     4141 tttgttgtgg ctgttgcccc gtcatccgtt gccaccatgt cggctgcggt tgttctactg
     4201 gggcgggggg ttgcggttgc ttgccatgtc gggcaagcaa ggcgtaatca gtgatgtact
     4261 gggttactaa agacttgtca
//
