LOCUS       NZ_CP031996             5594 bp    DNA     circular CON 28-NOV-2023
DEFINITION  Acinetobacter haemolyticus strain 2126ch plasmid pAhaem2126chb,
            complete sequence.
ACCESSION   NZ_CP031996
VERSION     NZ_CP031996.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09927970
            Assembly: GCF_009892345.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter haemolyticus
  ORGANISM  Acinetobacter haemolyticus
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 5594)
  AUTHORS   Castro-Jaimes,S. and Cevallos,M.A.
  TITLE     Analysis of the genomic diversity of Mexican Acinetobacter
            haemolyticus clinical isolates
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5594)
  AUTHORS   Castro-Jaimes,S. and Cevallos,M.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-AUG-2018) Evolutionary Genomics Program, Center for
            Genomic Sciences, National Autonomous University of Mexico (UNAM),
            Av. Universidad s/n Col. Chamilpa, Cuernavaca, Morelos 62210, Mexico
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: AUG-2018
            Assembly Method                   :: Unicycler v. 0.4.1
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 86x
            Sequencing Technology :: Illumina MiSeq and PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/28/2023 04:02:48
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,549
            CDSs (total)                      :: 3,458
            Genes (coding)                    :: 3,272
            CDSs (with protein)               :: 3,272
            Genes (RNA)                       :: 91
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 69
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 186
            CDSs (without protein)            :: 186
            Pseudo Genes (ambiguous residues) :: 0 of 186
            Pseudo Genes (frameshifted)       :: 45 of 186
            Pseudo Genes (incomplete)         :: 144 of 186
            Pseudo Genes (internal stop)      :: 26 of 186
            Pseudo Genes (multiple problems)  :: 26 of 186
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP031996.1.
            Bacteria available from Submitting center.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5594
                     /organism="Acinetobacter haemolyticus"
                     /mol_type="genomic DNA"
                     /strain="2126ch"
                     /isolation_source="Ascites liquid"
                     /host="Homo sapiens"
                     /db_xref="taxon:29430"
                     /plasmid="pAhaem2126chb"
                     /geo_loc_name="Mexico: Mexico City"
                     /collection_date="2011-02-16"
                     /collected_by="Instituto Nacional de Cancerologia"
     gene            join(5090..5594,1..1310)
                     /locus_tag="Ahae2126ch_RS17670"
                     /old_locus_tag="Ahae2126ch_17855"
     CDS             join(5090..5594,1..1310)
                     /locus_tag="Ahae2126ch_RS17670"
                     /old_locus_tag="Ahae2126ch_17855"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /protein_id="WP_004706791.1"
                     /translation="MIVDFFRHGSGLSKGCLDYLLGEDREREHAQVLSGDVDLTAQLID
                     SSPFAKKYTSGCLSFYEHALSDQDKQQIMQNFEECLFPGLDKDQYQILWVQHQDKVNQD
                     TGETRLELNFVIPNVELSTGKRLQPFYAPVDLDRVDLFKQITNAEHQLYDPDDPNNQQL
                     LINKKNLPKDVKDFKDQLHQRIYQAVVDGKVADRQKLVEWLESNEIKVTRQTQKSISIE
                     NPYEGATRPIRLSGEVYEQGFSATGEYRQEVQQRIATYRGTTSERYRANVTDYQRQLEH
                     KSQYHSDRYPAVRREISAEPTEQLTADREAARPVPSLATVQIEPFKANERADTDKRTAS
                     SEQKPTETAYHFEYGNDFGSCYFNYSHYCARFYGQKQVQRDTDTQYDHQRETNASGSPE
                     PIGGQFDVQHMQTAKQQSPTSMYSDQQGRRGLAEQLHGADGVLSDDRIRNTVIENHRRT
                     TAAITATTNSVAAATAEFRRDAKENYPSLISTIKGNGERTDRLSANTKVIIDNTDTISR
                     IGKKYSDLYRADQWQSQGDEPNYNELRGRTGENLNHTTVSLVTSSQSSAEFARNVRTIE
                     ANIVQMKERKKEMEQPQPKRDRGMNFGM"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(1543..3498)
                     /locus_tag="Ahae2126ch_RS17675"
                     /old_locus_tag="Ahae2126ch_17860"
     CDS             complement(1543..3498)
                     /locus_tag="Ahae2126ch_RS17675"
                     /old_locus_tag="Ahae2126ch_17860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017389689.1"
                     /GO_function="GO:0046983 - protein dimerization activity
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkyl sulfatase dimerization domain-containing
                     protein"
                     /protein_id="WP_004870594.1"
                     /translation="MKVKFLTVSLMFILPFSVFAANGQVEKAVIESNNAYKTKYNLDDM
                     TEFNYAQKGFIAKPTGQIKSEKGNVIWDFDAFNFLNDPAPNTVNPALWRQAKLNNNVGL
                     FKVTDRVWQIRGFDLANMTIIQGDTGWIIVDTLTSKETAEAALKFARQHLGEQKISAII
                     FTHSHIDHFGGALGVLSTEEINARKTPIIAPQGFMEEATSENLMAGSAMIRRATYMYGT
                     FLPKNAEGLVDTGLGKAVAVGKMGILEPTQLITQAEQKMTIDGLDFVFYNVPGSEAPAE
                     LTFSIPSLKLYNGAEILSHTMHNLYTLRGAKVRDALKWVGYLDQAMQHAKASDVLIAQH
                     HWPVWGNDNIQDFIKTQRDVYKFTHDQTVRYMNSGFNGAEIAEKIQLPAALDQKLYAHG
                     YYGTLKHNVKAIYQYYMGWFDAHPSNLDPLPPKAVAKKYIELAGGENNALKNARDAYAQ
                     ADYRWAAEILKHIVLNNPQNQQAKDLLANTYRQLGYAAEASTWRNFFLVGAQELQNNVP
                     LQNTSDPSDLLIHTPTERFLEAMATNLDVENLKNENQCINLVLSDTQENFSLWVENSIM
                     QFKRHDDSKDLASDCPTLTVTKPLYLKMITGQIKGVKVLLSNESKVKGNPLEIGKFFAM
                     FKRPDSTFPIVTRPND"
                     /name="alkyl sulfatase dimerization domain-containing
                     protein"
     gene            4699..5100
                     /locus_tag="Ahae2126ch_RS17685"
                     /old_locus_tag="Ahae2126ch_17870"
     CDS             4699..5100
                     /locus_tag="Ahae2126ch_RS17685"
                     /old_locus_tag="Ahae2126ch_17870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004706792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_004706792.1"
                     /translation="MEIDSVTKQKVVRERTFKVRLSESEYQLLDANNPFGSIAKLLRQS
                     AVDKATKIYNSKADDAEKIKSTKIVESSYSKTERNLILELGRIGNNVNQIAKAINTDIA
                     GTGTFDKVKLLHLLISIDQQLRELRPDDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     Typing          13..1307
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="98.0"
                     /evalue="0.0"
     Typing          5091..5593
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="92.857"
                     /coverage="99.0"
                     /evalue="1.68e-98"
ORIGIN
        1 acttacccaa ggatgtgaag gattttaaag atcagttaca ccaaaggatt taccaagctg
       61 tagtcgatgg caaagttgcc gatcggcaaa aattggttga atggcttgaa tcgaatgaaa
      121 tcaaagtcac ccgacaaacc caaaaatcaa tatcaatcga aaatccatac gagggcgcaa
      181 cacgtcctat ccgtttaagt ggagaggttt atgagcaagg ctttagcgct actggcgaat
      241 atcgacaaga agtacaacag cgaattgcaa cgtaccgagg aacaacttct gagcggtatc
      301 gagcaaacgt cacagattat caaagacagc ttgagcacaa gagccaatat cacagcgacc
      361 gctatccagc agtcagacga gaaattagcg cagaacctac agaacagctc acagcagatc
      421 gagaagcagc tcgaccagta ccaagccttg ctacagtcca aattgagccg tttaaagcaa
      481 atgaacgagc agatacagac aaaagaacag caagttcaga acaaaagcct actgaaacag
      541 cttaccactt tgaatatggc aatgattttg ggagctgcta ttttaattat tctcattatt
      601 gcgctcggtt ttatgggcaa aagcaagtac aacgagatac ggacactcaa tatgaccatc
      661 aacgagaaac aaatgcgagt ggatcacctg aaccgatcgg ggggcagttt gacgttcagc
      721 acatgcagac agcaaaacag caaagcccaa cgtctatgta ttcagatcaa caaggacgca
      781 ggggattggc agaacaactt catggtgccg atggggtatt aagtgatgac cgaattagaa
      841 acacagttat tgaaaatcat cgaagaacaa cagcagcaat tacagcaaca acaaactcag
      901 ttgcagcagc aacagcagag tttagacgtg atgcaaaaga aaattatcca agccttatca
      961 gcacaatcaa aggcaatgga gagcgtacag acagacttag tgcaaacaca aaagtcatta
     1021 tcgacaatac agacacaatt tcacgaattg gaaaaaaata cagcgaccta taccgagcag
     1081 atcaatggca aagtcaggga gatgagccaa attacaacga attacgagga cgtactggag
     1141 aaaatctcaa ccacacaacg gtcagtctcg tcacaagtag ccaaagctca gcagaatttg
     1201 ctcgaaacgt ccgaactatt gaagcgaata tcgtccaaat gaaggaacgg aaaaaggaaa
     1261 tggagcagcc ccaacctaag cgagatcggg gcatgaattt tggcatgtag ggtttatgct
     1321 cgattccgac tgttgctaat caaaaatatg gaacaatgat taaatattag gcgtgaaacg
     1381 tgaagaatca ataaaaaagc ccgacttaga caagttaggc ttttttattg attgtaaatt
     1441 attgaaataa ttaaactaat tttgtattta tgtgcactaa tgtgtgcaca taaaagcgga
     1501 gactttaatt tggtagggtt ctttaagccc agtcatttca tcctaatcat ttggtcgagt
     1561 gacaattgga aaagttgagt ctggacgttt aaacattgca aagaattttc caatttccaa
     1621 tggattgcct ttgactttac tttcgttaga aagcaggact tttacccctt ttatttgacc
     1681 tgtaatcatt tttagatata agggcttggt tacggttaat gttgggcaat ccgatgccaa
     1741 atctttactg tcatcatgac gcttaaactg catgattgag ttttcaaccc ataatgaaaa
     1801 attctcttgg gtatccgaca aaaccagatt gatacactgg ttttcatttt ttaaattttc
     1861 cacatctaaa tttgtcgcca tggcttcaag aaatctttca gttggcgtgt gaatcaataa
     1921 atcactcgga tcagatgtat tttgtagggg tacattattt tgtagctctt gagcacccac
     1981 caaaaagaaa ttacgccaag ttgaagcctc agcagcatag cccaattgac gatacgtatt
     2041 tgccaataag tcttttgctt gttggttttg agggttattc aacacaatat gttttaaaat
     2101 ctcggcagcc catctatagt cagcttgagc ataggcatcc cgcgcatttt ttaatgcatt
     2161 attctcccca cctgccaact caatatattt ttttgcaaca gctttaggcg gtaatggatc
     2221 taaattggaa ggatgagcat cgaaccatcc catatagtat tggtatatcg cttttacatt
     2281 atgctttaag gttccataat agccatgcgc atatagcttt tgatcaagtg ccgctggaag
     2341 ctgaattttc tcggcaattt cagcaccatt aaaaccagag ttcatatatc tcaccgtctg
     2401 atcatgtgtg aacttataaa catctcgctg ggttttaata aaatcttgaa tattgtcatt
     2461 gccccagaca ggccaatgat gttgtgcaat caatacatcg gatgctttgg catgctgcat
     2521 tgcttggtct aaatagccta cccattttaa ggcatcacgg actttggcac cgcggagggt
     2581 ataaagatta tgcatggtat gcgaaagaat ttctgcgcca ttataaagtt tcagtgatgg
     2641 gatagagaag gttaactctg ctggcgcttc tgaacccggc acgttataaa acacaaaatc
     2701 caaaccatca atggtcattt tctgttctgc ttgggtgatc agttgtgtag gctcaaggat
     2761 tcccattttc ccaacagcaa cagccttacc taaacctgta tccaccaatc cttcagcatt
     2821 ctttggtaaa aaggttccat acatataggt cgcacgacgt atcatggctg aacctgccat
     2881 caaattttca ctggtcgctt cttccataaa gccttgtggc gcaataattg gggtttttct
     2941 agcgttaatt tcttctgtag aaagaacgcc taatgcacca ccaaaatgat cgatatggct
     3001 atgggtaaag ataatggctg aaattttttg ctcacctaaa tgctgcctag caaatttaag
     3061 tgctgcttca gccgtttctt tagaggttaa tgtatccaca ataatccagc cagtatcacc
     3121 ctgaataatg gtcatatttg ccaaatcaaa accacgaatt tgccaaactc gatctgtcac
     3181 tttaaataga ccaacattat tgttgagctt tgcttgtcgc catagtgcag gattaacagt
     3241 atttggtgct ggatcattta aaaaattaaa cgcatcaaaa tcccagatca cattgccttt
     3301 ttcactttta atttgacctg ttggcttggc aataaagcct ttttgcgcat aattaaactc
     3361 tgtcatatcg tctaaattat atttcgtttt atacgcatta tttgattcaa tgaccgcttt
     3421 ttcgacttgt ccatttgctg caaaaacaga aaatggcaaa ataaacatca atgaaaccgt
     3481 taaaaattta actttcattg tctttccttc ttcaaaatat ccataaatgt tgatttcctt
     3541 gtctatacta tttttgatat gtgttgaatt aatagaagct tttcaattca aacattataa
     3601 taacagccat cattttttat gatggaatca taaaataata ttttacaaga atatacctgt
     3661 ttttattaaa actacgcagt ccttattggg catgagttag taggagagaa aaataaaaat
     3721 tttgttaaaa cctaaagaaa aacccctctg agtcttgcaa cttagagggg ttttgtctta
     3781 aatttggtgg tacgcagtta tttgatgttc gagcatcaag taacgaagat cataaggttt
     3841 gacgaccgtt atgatttcac ctttcggctt gtaccgcttt tcaaattcta tcaaattgat
     3901 aaaaaatggc aagcattgta tcagtaaaaa gtctttcgtt acctgactct cgttcatcca
     3961 ataagcaata catagacagt attcgagcct tatcagcttc tgtgcatcct ttttaaggaa
     4021 gatatgcggt gcatgtggag ggaataagtg tcactggtgc atcgtagcga tagtgaaagc
     4081 tgagaagcag gagctgaacc gttacagggg aatcccacaa aagcggagcg ttgagagtag
     4141 ttgtataggt tggttaagtt gcatgttgga gaaatcctcg cagagatacc gccatacttc
     4201 gacagggagc gcgtggggag aggtgcagta cctttagtcc ttgtctgcca tgtatgtgaa
     4261 gcatggtgcg gatacgaccg atgcgtggct ccgtcagcct aatcaggtta aatcggcaat
     4321 acttagggga tgtgttattt tttgaatgac agcccttagg gagagtattg ccgaaactct
     4381 ctcaacgctc accatctgcc tgagcaaagc gagggctgtg gtggtggtga gaaagagttg
     4441 agtgctattg ttttacaaga tttatgccag ttcttattag ggtttatata ctgtatcatt
     4501 tgattaaatt ttagtataaa taattctttc cctttttaaa taagcaagga tacacagtta
     4561 cccctatttc acttcgttta atagtgctaa gctgtgacct tgatcagggg cttcaccccc
     4621 gatacccccg aaaaccggtt taaagaaaaa tcaaagattt tcctctaaac cggttagacc
     4681 aagaatggga ttgttcaagt ggaaatagat tcagtaacta aacagaaagt agtacgggaa
     4741 cggacgttta aagtcagact ttcagaatca gaatatcaat tgctcgatgc caataatcct
     4801 tttggttcaa tcgcaaagtt gctacgtcag tcagcagtag ataaagcaac aaagatttat
     4861 aattccaaag cagatgatgc tgaaaaaatt aaatcaacaa agattgttga atcttcatat
     4921 agcaagacag agagaaattt aatcctagaa ttgggtcgta taggtaataa cgtgaatcag
     4981 attgccaaag cgattaatac ggatattgca gggacaggta cttttgacaa agtgaagtta
     5041 cttcatttgt tgatttccat agatcaacaa cttcgggagt tacgaccaga tgatcgttga
     5101 tttttttaga catggttcag gattatctaa aggttgtcta gattatttgc ttggtgaaga
     5161 tagagagcga gaacatgcac aggttttaag tggtgatgtt gacttgaccg ctcaactgat
     5221 tgatagcagt ccttttgcca agaaatatac cagtggttgt ttatcctttt acgagcatgc
     5281 tttatctgac caggataaac agcagatcat gcaaaatttt gaggaatgcc ttttccctgg
     5341 tctcgataaa gatcagtacc aaattttatg ggtacagcac caagataagg tgaatcaaga
     5401 tactggagag acacggcttg agctgaattt tgtgattcca aacgttgagc tttcgacagg
     5461 caaacggcta cagccatttt atgcgccagt ggatttagat cgagtggatc tgtttaagca
     5521 gattaccaat gcagaacatc aactatatga tcccgatgat ccgaacaatc agcagctttt
     5581 aatcaataag aaga
//
