LOCUS       NZ_CP031982             4481 bp    DNA     circular CON 05-JAN-2024
DEFINITION  Acinetobacter haemolyticus strain AN4 plasmid pAhaemAN4b, complete
            sequence.
ACCESSION   NZ_CP031982
VERSION     NZ_CP031982.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09927973
            Assembly: GCF_009892285.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter haemolyticus
  ORGANISM  Acinetobacter haemolyticus
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 4481)
  AUTHORS   Castro-Jaimes,S. and Cevallos,M.A.
  TITLE     Analysis of the genomic diversity of Mexican Acinetobacter
            haemolyticus clinical isolates
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4481)
  AUTHORS   Castro-Jaimes,S. and Cevallos,M.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-AUG-2018) Evolutionary Genomics Program, Center for
            Genomic Sciences, National Autonomous University of Mexico (UNAM),
            Av. Universidad s/n Col. Chamilpa, Cuernavaca, Morelos 62210, Mexico
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: AUG-2018
            Assembly Method                   :: Unicycler v. 0.4.1
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 104x
            Sequencing Technology :: Illumina MiSeq and PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/05/2024 04:35:17
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,612
            CDSs (total)                      :: 3,518
            Genes (coding)                    :: 3,353
            CDSs (with protein)               :: 3,353
            Genes (RNA)                       :: 94
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 165
            CDSs (without protein)            :: 165
            Pseudo Genes (ambiguous residues) :: 0 of 165
            Pseudo Genes (frameshifted)       :: 34 of 165
            Pseudo Genes (incomplete)         :: 135 of 165
            Pseudo Genes (internal stop)      :: 22 of 165
            Pseudo Genes (multiple problems)  :: 23 of 165
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP031982.1.
            Bacteria available from Submitting center.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4481
                     /organism="Acinetobacter haemolyticus"
                     /mol_type="genomic DNA"
                     /strain="AN4"
                     /isolation_source="Ulcer by decubitus"
                     /host="Homo sapiens"
                     /db_xref="taxon:29430"
                     /plasmid="pAhaemAN4b"
                     /geo_loc_name="Mexico: Puebla"
                     /collection_date="2010-11-26"
                     /collected_by="Hospital para el Nino Poblano"
     gene            complement(join(4212..4481,1..159))
                     /gene="mobC"
                     /locus_tag="AhaeAN4_RS17915"
                     /old_locus_tag="AhaeAN4_18045"
     CDS             complement(join(4212..4481,1..159))
                     /gene="mobC"
                     /locus_tag="AhaeAN4_RS17915"
                     /old_locus_tag="AhaeAN4_18045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005265346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid mobilization relaxosome protein MobC"
                     /protein_id="WP_216071444.1"
                     /translation="MRELKTEIKKLRFTKSEVAELDQYLAASDLTFSEFVSDLIKEKLH
                     GNNAAIKKKTKKIEPPKADPAVLFQIGKIGNNLNQIARTLHILKNDPKVNQFSFLECFY
                     VLSQMQKDLHDYLGELPKIERSPEAVAKARERAIKRRA"
                     /name="mobC"
     gene            complement(479..1363)
                     /locus_tag="AhaeAN4_RS17920"
                     /old_locus_tag="AhaeAN4_18050"
     CDS             complement(479..1363)
                     /locus_tag="AhaeAN4_RS17920"
                     /old_locus_tag="AhaeAN4_18050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004917957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_160132298.1"
                     /translation="MNVAQLADFFNNLAYKPYCADDLLYGLQIRPKKTAINMQYIQGNQ
                     PCMFHYFFFDIDRSDAVMAWHEENLPMPYWTAQTQKNGHAHLCYKLEIPLCTSEFGSQK
                     AIAYASKVQAGLANKLGADVGYSHLITKNPFHKDWRVTFWSEQAYTLDYLADFVELPKK
                     LSKEQEVLGLGRNCTLFDTVRKWAYKAIRAHRGSTFDIWLGKVLERCQNANSAFIEPLP
                     YSEVKATAKSIARYCWKKDGYHYQEFIDRQSRKGAMGGKKSKGGGRPSLGEPWIELGIS
                     RRTWFRKFGTKQA"
                     /name="replication initiation protein"
     gene            complement(1624..1965)
                     /gene="mazF"
                     /locus_tag="AhaeAN4_RS17925"
                     /old_locus_tag="AhaeAN4_18055"
     CDS             complement(1624..1965)
                     /gene="mazF"
                     /locus_tag="AhaeAN4_RS17925"
                     /old_locus_tag="AhaeAN4_18055"
                     /EC_number="3.1.27.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005402007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endoribonuclease MazF"
                     /protein_id="WP_005402007.1"
                     /translation="MPQNYVPEEGDIIWINFNPQSGHEQAGHRPALVLSPSSYNKATSL
                     LVCCPMTTQIKGYPFEVKISGNPENVALSDQVKSLDWVARSATKKGQAKSEELEEVRQK
                     IAALLKIST"
                     /name="mazF"
     gene            complement(1965..2204)
                     /locus_tag="AhaeAN4_RS17930"
                     /old_locus_tag="AhaeAN4_18060"
     CDS             complement(1965..2204)
                     /locus_tag="AhaeAN4_RS17930"
                     /old_locus_tag="AhaeAN4_18060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005402008.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AbrB/MazE/SpoVT family DNA-binding
                     domain-containing protein"
                     /protein_id="WP_004918185.1"
                     /translation="MELAIKKWGNSAAVRLPSILLESLNLKLDSRVEVFTQDEAIVIKP
                     IKSKISLEQLLADITSDNLHGEVDTGHAVGKEFY"
                     /name="AbrB/MazE/SpoVT family DNA-binding domain-containing
                     protein"
     gene            complement(2276..4210)
                     /locus_tag="AhaeAN4_RS17935"
                     /old_locus_tag="AhaeAN4_18065"
     CDS             complement(2276..4210)
                     /locus_tag="AhaeAN4_RS17935"
                     /old_locus_tag="AhaeAN4_18065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005265344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_160132299.1"
                     /translation="MYIKFLKHGQGSPSKAAGYLVDEKDHLDRPRQDVQVLCGDPQTFT
                     AIAESIQNEWKYTSGVIAWSKSDNPTDEQIKEVLEAFERHAFAGLEPSQYHMTAVLHEE
                     DDGSKHVHFLVPRVELETGKALNIAPPNHQKYYDPLRDHFNYKNGWDRPDGIALQRDTQ
                     QPNHEHFIDKAAIRAGLKDRPVKDVRELVGDFLEQRIEHGFIRNRSDVVDALKELGEVT
                     RQGKDYISLKIDEESKAIRLKGAFYEQEFSIKSYIEDRARTANDAGTSREFRAVSADHQ
                     KRAEQCREEFTRLATKRSEYNAERYQRPERDNTGLELNQEREQHNSQSYQRGGQDSTNS
                     VKPTEAEFTAFDGGLRGLERQEQRSRQDDQNQKKSSDNQYHFVSTSSDFFHQQHLFWLR
                     QQEQIRRHKRDANKGGLVEITGGEHEYSEMRNREKMEVVRTDRPEGRRVQQQYANSAGN
                     QLNESRSTVIADYRAATAAAQRATEAARASLAAYSGTEQNHRRIRELQQQTGEALQPVE
                     RERKRADQYHQETTESEVIRGFITKLGEQLKTAITEPFRAISDWVKSKERDQRTIANDD
                     LYRNREADSTIDRTASKETRLGEQLSRKISGFSTDPIFKALDEIDRRRDLQRVQERKND
                     RGYDSPSPF"
                     /name="hypothetical protein"
ORIGIN
        1 tttctttatt gccgcattgt taccgtgtaa cttttcctta attaaatcac tcacaaactc
       61 actaaaagtt aaatctgatg cagctaaata ttggtcaagt tctgctactt cactctttgt
      121 aaaacgaagt ttcttaattt ctgtttttaa ttctctcatg tgccttactc gcttttgctc
      181 ttgcttttgg ggtttggggt ttccccaaca agcccctgtg tcagaaatca tgcggcagcg
      241 ttgatttgtg gacacagggt aggcttgctt aattcaagat agcataagaa tttttagcaa
      301 gcaaacaagg ctgtactatt tgaacctcct tgcctttgaa aggattattt ctgtccattg
      361 gagttattct tgttttcgat ggatttaaat agaaattaaa aaagagcagc atcaaattag
      421 gactgcatta cagaatcctg atctacggca aaaacccata aatgggctgt tatctgattt
      481 aggcttgttt agtgccaaat tttctaaacc atgtccgcct agaaattcct aactctatcc
      541 acggctcacc taatgatggt ctaccgccac ctttagactt cttaccaccc attgcacctt
      601 tacgactttg acggtctata aactcctgat aatgatagcc gtctttcttc cagcagtatc
      661 gagcaatgga ttttgcagta gctttgactt cgctatacgg taatggctct ataaacgcac
      721 tatttgcgtt ctgacaccgt tctaggactt tccctaacca aatatcaaat gtactgcccc
      781 gatgcgctct aatcgcctta tatgcccatt tacgcacggt atcgaataga gtgcagttgc
      841 gcccaagtcc taaaacttcc tgttctttgc ttaatttctt gggcaactct acaaaatcag
      901 ctaaataatc gagcgtatag gcttgttcac tccaaaaagt gacacgccaa tctttatgaa
      961 atggattctt agttatgaga tgactatagc caacgtctgc cccaagttta ttagcaagtc
     1021 ctgcttgtac ctttgaagcg taggctattg ctttttgact gccaaactca ctggtacaca
     1081 atggaatttc taatttatag cagagatgag catgaccatt tttttgtgtt tgtgctgtcc
     1141 agtagggcat tggtaaattt tcttcatgcc acgccatgac tgcatctgaa cggtctatgt
     1201 caaaaaagaa gtaatgaaac atacaaggct gattcccctg tatgtactgc atattgattg
     1261 ccgttttttt cggtcttatt tgtaagccgt acagtaagtc gtctgcacag tatggtttat
     1321 aggcaagatt attaaaaaaa tctgccaatt gagcaacatt catattttgc aacgtccaaa
     1381 aggttgcaaa cgctcaaaac atcggtaaaa tacaagtatc gaatttgcgt ttactgatgc
     1441 tttaagtatt tgttaaacaa tgagaaaaaa gtgagcctgc aagcttgctt ttttttcgcc
     1501 taaaagaaaa tttaacacac ttcattaaac tttccaactt attgatttat ataggctatt
     1561 gtatcagtaa ataatctaaa aaaaatttat gcattacttt accctttgat ttcatagatg
     1621 atatcaagtt gatattttca gtaaggctgc aattttttgt cgcacttcct caagttcttc
     1681 agatttagct tgtccctttt tcgttgctga tcgagcgacc caatctaaac tttttacttg
     1741 atcagatagt gctacatttt caggatttcc tgaaatttta acttcgaaag gatacccttt
     1801 tatctgtgtt gtcattggac agcaaactaa taggcttgtg gctttattat aagatgaagg
     1861 acttaaaact aaggcaggtc tatgccctgc ctgttcatgc ccactttgtg ggttaaaatt
     1921 aatccagata atatcgcctt cttctggtac ataattttga ggcattaata gaattcctta
     1981 cctacagcat gtccagtatc cacttcacca tgcaaattat cagatgttat atctgctaaa
     2041 agctgctcta aagatatttt tgatttaatt ggtttgataa caatcgcttc atcttgagta
     2101 aatacctcaa cacggctatc caatttaaga ttaaggcttt ctaataagat ggacggtagg
     2161 cggacagcag cactattgcc ccatttttta atagctagtt ccataacagc aacctaaagt
     2221 atctacaatg tagatacaat accctgggaa aatttttgcg tcaataccgt gggcattaaa
     2281 atggactagg tgaatcataa cctctatcat ttttacgttc ttgcactctt tgcaaatctc
     2341 tacgcctgtc tatctcatct aaagccttga agatagggtc tgtactaaat cctgaaatct
     2401 ttcgtgatag ttgctcaccg agtctagttt cctttgaagc tgttcggtca atggtgctgt
     2461 ctgcttctcg atttctgtat agatcatcgt tggcaatagt tcgttgatct cgttctttag
     2521 atttaaccca gtcactaatt gctctaaatg gctctgtaat cgctgtttta agctgctctc
     2581 caagttttgt aataaatcct ctgataactt cggattctgt agtttcttga tgatattgat
     2641 cagctcgttt tctttctcgt tcaactggtt gcagtgcttc accagtttgt tgttgtagtt
     2701 ctctaattcg tctatggttc tgttctgtgc ctgaataagc tgcaaggctt gctcttgctg
     2761 cttctgttgc tctttgagct gctgctgttg ctgctcgata atctgcaata actgtgcttc
     2821 gagattcatt taattggttt cctgcactat tcgcatattg ttgctgtact cgcctgcctt
     2881 cgggtcgatc tgtacgcacc acctccattt tttctcggtt ccgcatttct gaatattcat
     2941 gctcgccccc tgtgatttca accaatccac ctttgtttgc atctcgttta tgtcggcgta
     3001 tttgctcttg ctgacgtaac caaaacaaat gctgctgatg aaaaaagtcg ctgctagtgc
     3061 tgacaaaatg atattggttg tcactagatt ttttttgatt ttggtcatct tggcgacttc
     3121 gttgctcttg tcgctcaagt cctcgcaaac ctccgtcaaa cgctgtaaat tctgcttctg
     3181 ttggcttaac gctgtttgta ctgtcctgac ctcctcgctg atagctttgg ctattgtgct
     3241 gctctcgttc ttgattgagt tcaagtcctg tattgtccct ttcaggtcgt tgataacgct
     3301 ctgcgttgta ctcgctgcgt tttgttgcaa gccttgtaaa ttcctctcgg cactgttcag
     3361 cacgtttttg gtggtctgct gaaactgctc taaactctct tgatgttcct gcatcatttg
     3421 ccgttcttgc tcgatcttcg atgtaagact tgatgctaaa ttcttgttca taaaacgccc
     3481 ctttcagccg tattgccttt gattcttcat caatttttaa tgaaatgtag tccttgccct
     3541 gccgtgtcac ttcaccaagt tctttgagtg catctactac gtccgaccta ttgcgtataa
     3601 agccgtgttc tatccgttgc tctaaaaaat cccccaccaa ctccctaaca tccttgactg
     3661 gtcggtcttt taaccctgct cggatggctg ctttatcaat aaaatgttca tggtttggct
     3721 gttgcgtatc acgctgtaat gcaatgccgt caggtctatc ccaaccattt ttataattaa
     3781 aatgatctct taaagggtca tagtattttt gatgattagg cggtgcgatg ttcagggctt
     3841 tgcctgtttc caactccaca cgaggtacta aaaaatgcac atgctttgaa ccgtcatctt
     3901 cttcatgcaa aactgctgtc atgtggtact ggctcggctc aagccctgca aatgcgtgtc
     3961 gctcaaaggc ttctaatact tcttttatct gctcatcagt tggattatct gattttgacc
     4021 aagcgatgac accgcttgta tatttccact cgttttgtat gctctcggca atcgctgtaa
     4081 acgtctgcgg atctccgcac aacacctgaa cgtcttggcg tggacgatca aggtgatctt
     4141 tttcatcaac caagtagcct gcggctttcg atgggctgcc ttgtccgtgt tttaaaaact
     4201 tgatgtacac ctcacgccct ccgcttgatg gctcgctctc ttgcctttgc aacagcttca
     4261 gggcttctct ctattttcgg caactcccct agataatcgt gtaagtcttt ctgcatctga
     4321 cttaggacgt aaaaacactc taaaaatgaa aactgattta cctttgggtc gttcttgaga
     4381 atgtgcaagg ttctagcaat ctgatttaaa ttgttcccaa tcttaccaat ctgaaataaa
     4441 acggctgggt cggctttagg tggctctatt ttctttgtct t
//
