LOCUS       NZ_CP031882             5733 bp    DNA     circular CON 05-JAN-2024
DEFINITION  Klebsiella pneumoniae strain WCHKP095845 plasmid p1_095845, complete
            sequence.
ACCESSION   NZ_CP031882
VERSION     NZ_CP031882.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06019523
            Assembly: GCF_001887995.2
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 5733)
  AUTHORS   Yao,Z., Feng,Y. and Zong,Z.
  TITLE     The complete genome of Klebsiella pneumoniae strain WCHKP095845
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5733)
  AUTHORS   Yao,Z., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-AUG-2018) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.6
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 200.0x
            Sequencing Technology             :: Illumina HiSeq; MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/04/2024 20:56:36
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,386
            CDSs (total)                      :: 5,264
            Genes (coding)                    :: 5,140
            CDSs (with protein)               :: 5,140
            Genes (RNA)                       :: 122
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 124
            CDSs (without protein)            :: 124
            Pseudo Genes (ambiguous residues) :: 0 of 124
            Pseudo Genes (frameshifted)       :: 53 of 124
            Pseudo Genes (incomplete)         :: 66 of 124
            Pseudo Genes (internal stop)      :: 24 of 124
            Pseudo Genes (multiple problems)  :: 15 of 124
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP031882.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5733
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="WCHKP095845"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="p1_095845"
                     /geo_loc_name="China: Sichuan"
                     /lat_lon="30.64155078 N 104.06053988 E"
                     /collection_date="2016-05-20"
                     /collected_by="Zhihong Yao"
     gene            join(5318..5733,1)
                     /locus_tag="BT110_RS00005"
                     /old_locus_tag="BT110_00005"
     CDS             join(5318..5733,1)
                     /locus_tag="BT110_RS00005"
                     /old_locus_tag="BT110_00005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001283459.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_060628320.1"
                     /translation="MSDQKNNFNLQKQTLESKWGKEALSMGWSAIPTSLFFLQGALNMT
                     PTTFNVLLHLIIHWWKPYDWPHPSQESIAVRMGVSSRTVQRSLQELENYGLLTKIRTSK
                     DNPKYKGRNIYDMSLLVKSLNILTPDLNAKLNEK"
                     /name="helix-turn-helix domain-containing protein"
     gene            782..1090
                     /locus_tag="BT110_RS00010"
                     /old_locus_tag="BT110_00010"
     CDS             782..1090
                     /locus_tag="BT110_RS00010"
                     /old_locus_tag="BT110_00010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012564913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_060628143.1"
                     /translation="MTEKLKGTASVLHETKTYEELVEKHSVEVANGLLANAINTALPNA
                     GITSNDVAGFSKVTIALRTGEVDLAKTAKEANADAAAVSANIIAGLKASQKSKDEIK"
                     /name="hypothetical protein"
     gene            complement(1283..1975)
                     /locus_tag="BT110_RS00015"
                     /old_locus_tag="BT110_00015"
     CDS             complement(1283..1975)
                     /locus_tag="BT110_RS00015"
                     /old_locus_tag="BT110_00015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000550475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3800 domain-containing protein"
                     /protein_id="WP_071556240.1"
                     /translation="MHLLYVDESGTPSDPTLNHFVLSGISVFEKQTHWIEQEMNAIAAR
                     FNTDDPYERELHGSPMRGGRDGWKNFPFDDRKQAIKDCLTLLTQKHRDIRIFACVVPKG
                     SLGGKDVITESFYQISSRFDMYLSRLHYQGATSRGVAIFDKSSTEKSIQSLARTFKDTG
                     YGYGKLRNFSEVPLFLDSKASRLIQLADLVSYSIFRKFELNDDEFYKIIEHSFDYNNGK
                     VHGLYVAH"
                     /name="DUF3800 domain-containing protein"
     gene            complement(2937..3338)
                     /locus_tag="BT110_RS00025"
                     /old_locus_tag="BT110_00025"
     CDS             complement(2937..3338)
                     /locus_tag="BT110_RS00025"
                     /old_locus_tag="BT110_00025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310048.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_060628044.1"
                     /translation="MARVSISEAARLTGKSRTTLHRLIKAGDLSTCSGERNAKMVDTSE
                     LLRVFGPFEQPKGEHHSGQVAEQRDTASADQSEQVIRHLKQEIEHLNTLLLSKDSHIDS
                     LKQAMLLLENHQAKLTESPAPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            complement(3338..3529)
                     /locus_tag="BT110_RS00030"
                     /old_locus_tag="BT110_00030"
     CDS             complement(3338..3529)
                     /locus_tag="BT110_RS00030"
                     /old_locus_tag="BT110_00030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_060628048.1"
                     /translation="MMKQQKTALNMAKFIQNQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSRLDALQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(4296..4970)
                     /locus_tag="BT110_RS00035"
                     /old_locus_tag="BT110_00035"
     CDS             complement(4296..4970)
                     /locus_tag="BT110_RS00035"
                     /old_locus_tag="BT110_00035"
                     /inference="COORDINATES: protein motif:HMM:NF014045.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="WP_001259273.1"
                     /translation="MRTIVYVDGFNFYHGLVKRSGYKWLDLYKLFEEQLLPIRARESQL
                     IQVKFFTAEIKAKFATRGELAHQAQQAYHRALLQIYGEKLQIIKGYYSERQECAMTFNE
                     GYPPSKTDRTTVWKLEEKQTDVRMALEMYRDAIRGEAEQLVLCTNDSDMIPPIEMIKAD
                     RPELKIGIVVPREQDTSRVISSLASLGDWSLPYVSYEALRLALLPDKVPTRRKPILKPN
                     HW"
                     /name="NYN domain-containing protein"
     Typing          3651..4054
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.103"
                     /coverage="99.0"
                     /evalue="4.61e-167"
ORIGIN
        1 accgcaaaat acatttaaaa tcaggccacc gtcgtagcag gtttaccatt tatcaggtct
       61 gtatctcgga ctccgccaag atgaacaggg gattgccggc acactctgca ctcaccttag
      121 atcaaaattt aatcaccacg aaagatgatc taagatagtg ctttacaagc aaaacatctt
      181 aataatatat tcattaaata aaatgaatat ttaatggaaa gccttaaatg cctggaaaaa
      241 agtgcccctt ctgtaacaag ctgaccctct tcggaaacag ctgtacttct tgcaatgctg
      301 tagtgagaac accaccaaac gaaggccggg gcggaagagg taagcaatgt ccattttgta
      361 agacaatgac actgttcaaa gatggtacga atggatctct aaaatgctcc atgtgtcagc
      421 gtaagttttc cccatcgtaa gggggaaaat gtcacaccca gtaggaaagc acgtatcgaa
      481 aaagcaagaa cacgaactta attactggct aaaaaagagg gggttcaaag agagtaaaca
      541 tcactagtgt ggctgattgg gtgagcaaag ctaggactag gaatgcctag caatgagtat
      601 ctcgatgcat gccgaattag ataaatactt tcaagataac aaagggttat gggttgacga
      661 atttgagaca aaatgatctc tgttacatct gagataaatt ccataacgtg ggatttatcc
      721 atttaaaatc aaaacaatat gtaaaatccc acatctaaat tatcacagac aagaggttta
      781 catgaccgag aaactgaaag gaacggctag tgttctgcat gaaaccaaaa cttatgagga
      841 attggttgag aagcattcag tagaagtcgc taacggcttg ctggcaaatg cgatcaatac
      901 tgctttgcct aacgcaggaa taacttcaaa tgacgtcgcc ggattcagca aggtgacgat
      961 agccttgcgc acaggagaag ttgatctagc caaaacagcg aaagaagcga acgctgatgc
     1021 tgcagctgtt tcagcaaata ttattgcggg attgaaagca tcacaaaaga gcaaggatga
     1081 aataaagtga ttatcagcag ggtaaaaagc cacctgaatg gtggcttttt tatgtccata
     1141 acgggctgta ctcactataa catccgttgt gcgatgctaa tgagaaaatg caatgcaggc
     1201 ttcagtcgta ggccctgcat cgatggaaga tagtggctac agcggcatct gacccggaga
     1261 caacctatcc acagcgattc aattagtgag ctacgtaaag tccgtgaact ttaccattat
     1321 tgtagtcaaa ggaatgctca ataatcttgt agaactcatc atcattgagc tcaaacttcc
     1381 tgaaaattga gtacgataca agatccgcaa gctgaatcaa ccttgacgcc ttggaatcca
     1441 aaaacaaagg cacttcagag aagttacgaa gttttccata tccatatcca gtatctttaa
     1501 acgtacgagc aagagactga atacttttct ctgttgacga tttatcaaaa atggccaccc
     1561 ctcgagatgt tgctccttgg taatgtaatc ggctcaaata catgtcgaaa cgagacgata
     1621 tctgataaaa agattctgtt attacgtcct ttccacctaa ggatcccttg ggtacaacac
     1681 acgcaaatat acggatatcc cgatgctttt gagtcaggag tgttaggcaa tctttgatcg
     1741 cttgtttcct gtcatcgaaa ggaaaatttt tccagccatc tcgcccacct ctcataggcg
     1801 aaccatgcaa ttctctttca tacggatcat cagtattaaa tctggctgcg atagcattca
     1861 tctcttgctc tatccaatga gtctgctttt caaacactga gataccagaa aggacaaaat
     1921 gattaagtgt agggtctgat ggtgtaccag actcatcaac gtataagaga tgcatcgaag
     1981 attccttaaa cgaaaaaggc cgcgcaaatg cgcggccttt tcataaatta ggcaagccag
     2041 tgcgataaaa atcgcataca ccgctatggg cagcgaactg actcagtgtt gagcataaca
     2101 ggcaaacgca tatttaccaa aataatttat acacatatca taatcatgag caattaaata
     2161 acataaattc aatcggatag ttgcttcatc gtcactctta tttaccataa catccgttat
     2221 cagcaccgcc tgagaggccc tcagagcgtt tctgacggaa aaccggtaaa acaggcaaca
     2281 aaccacccga aaacccgcca gaaacgcaca ggctctgttt ttacggcatg catgagtatg
     2341 cgcacaagtg catagcgcgg aaattgacac cattcagcca ggggaagtcc tgtttccggc
     2401 gttcttctcc tccgaaaacg gtgaacgggg acgcaattta ttgcgtggcc gtgaagcgtt
     2461 gccggcgcag ccggaaaacc ggttttcagc acgttcagga atcaggttcg tcgacggccg
     2521 gcaatcacgt tatggcaagt caccagacga ctcaccacac gattcaccgg cgattcgact
     2581 cgtgacttga ctctagagtc actacggtca aaaaaacgcc aaagcgacga ttcgactcta
     2641 gagtcaagtc gtcataagtt actgatagtg tggagtgagt cgtcgatgac tctatgacga
     2701 gtcgtcggca agtcgtacac gaatcgccga cgacttggat tcaccttaca gaaagtaata
     2761 ctgcgtaatt taataaccca caaataactg atattaatga gttatcttca aaattttaat
     2821 tttgcgtggg gtgtgggtat ttttagtggt gaggtgcgtt cagagatctg acgatttttg
     2881 ggaaggttca ggaactcccc gggatggccg gagaggaaaa ctgaagcatg acggggtcag
     2941 gattttttcc agaatttcca ccatggcgcc ggggattcag ttaattttgc ctggtgattt
     3001 tcaagaagga gcatggcctg tttgaggctg tcaatgtgcg aatccttgga caaaagtaag
     3061 gtgttcaggt gttcaatctc ctgtttcaga tgacgaatca cctgttcact ctggtcagca
     3121 gaggctgtat cacgctgttc agcgacctgt ccagaatggt gttcaccctt cggttgttca
     3181 aagggaccaa agacacgtaa aagctctgaa gtatctacca tttttgcatt gcgttcaccg
     3241 ctacaggtgg acaggtcacc tgctttaatt aacctgtgca gtgttgttct actcttaccc
     3301 gtcagtcggg cagcctcact aatagaaact ctggccatca gttaccatcc tgtaatgcat
     3361 ccagtcttga ggacagtgta cggaaaagat gctccgcatc atcgtggagt ttctcacaaa
     3421 ggtcggcctc gacatcgaga tcaagctcat taagcttctc cagcaggagc agagactgat
     3481 tctggatgaa tttagccatg ttcagcgctg ttttctgttg tttcatcata agaggcctca
     3541 gagcgtcagt gctcagtgta gggatgttct cttttccgct tcctcgctca ctcagtcgct
     3601 atgctcctgc cgttcggctg cggcgagcgg caggagcatg cgtgtaaaag ctcgagaaaa
     3661 ccgagcggtc gcgtgacggg gaaaaggaaa ggccgcttag cggccgtttt tccataggct
     3721 ccgcccccct gacaagcatc acagaagctg acgctcaaat cagtggtggc gaaacccgac
     3781 aggactataa agatatcagg cgtttccccc tgatggctcc ctcgtgcgct ctcctgttcc
     3841 tgccattcgg tttaccggtg tcattccgct gttatggccg cgtttatctc attccacgcc
     3901 tgacactcag ttccgggtag gcagttcgct ccaagctgga ctgtatgcac gaaccccccg
     3961 ttcagcccga ctaccacgtt gtcccggtaa ctatcatctt gagtccaacc cggaacagac
     4021 acgaaaaatc gccagtggcg gtagccatta gtaagaggat tcacggagcg gagtagtaga
     4081 gtgttctaca gagttcttga agtggaggcc tgactgcggc tacactggaa ggacagtttt
     4141 ggtacctgcg ctccgtgaaa gccagttacc ttcggaagaa agagttggta gctcttgatt
     4201 ccggcaaacg aaccaccgtt ggtagcggtg gtttttttgt ttgcagggca tgagattacg
     4261 acgagagtaa aaggatcaca agaagatccg gctgtttacc agtgatttgg cttcagtatt
     4321 ggtttccgtc tagtgggaac cttatctggt aatagcgcta atctcaaagc ttcgtaggat
     4381 acatatggca ggctccaatc ccctaaacta gccagactac taataactcg actagtatct
     4441 tgctcccttg gtactacgat tccaattttc aattcaggtc gatcggcttt tatcatttct
     4501 attggcggta tcatatccga atcgttagta cagagaacca actgctctgc ctcaccacga
     4561 atcgcatcgc gatacatttc taaagccatt ctaacgtcag tctgcttttc ttctaacttc
     4621 cagaccgttg ttctatccgt tttcgatgga ggatacccct cattgaaggt catcgcacat
     4681 tcctgacgtt ctgagtagta ccctttgatt atttgtagct tctcgccata aatctgcagt
     4741 aatgctcgat ggtaagcttg ctgagcctgg tgagctaact cacctcgggt agcaaattta
     4801 gctttgatct cagcagtgaa gaacttcacc tgaatcaact gtgactctct tgctcttatc
     4861 ggaagtagtt gttcttcaaa gagcttataa aggtccagcc acttatatcc cgaacgtttg
     4921 accaatccat ggtaaaaatt gaacccatct acgtaaacta ttgttctcat tttatttcac
     4981 gcataaaaaa accgcctcta agggcggttt taacaacaaa aactaacgtt agcaaacagt
     5041 ttaagttgta gttcctcagg gttaaaacta accgagagag cggtttcaag ctcctgaagg
     5101 aagacgcgta acttaatcgc tgcccaccta aagggaggtt tagagcctca agggagccgc
     5161 gtaacttaat cgcgctacca agaggtgagt gtagattaag tatagttgaa tataatgata
     5221 ttataagcgc gctggtgtcg tactaattat atgaattaat ttaccaacct gctaagctga
     5281 agtcttctaa gaagacttca gcttagcagg ttggtatatg tcagatcaaa aaaataattt
     5341 taaccttcaa aaacaaacac ttgaatctaa atggggaaag gaagcattaa gcatgggctg
     5401 gtcagctatt cctacatcac ttttcttctt acagggtgcg ctcaatatga cacccacaac
     5461 attcaatgtc ttactccatc taattatcca ctggtggaaa ccctacgatt ggccacatcc
     5521 ctctcaggag agcattgcag ttagaatggg tgtttcatca agaacagtgc aacgctcact
     5581 ccaagaactt gaaaactacg gattgcttac aaaaattcgt acaagtaagg acaaccctaa
     5641 gtacaaagga agaaacattt acgatatgtc tcttttggtt aagtcactaa atattcttac
     5701 tcctgacctt aacgccaaac tgaacgaaaa ata
//
