LOCUS       NZ_CP031360             2096 bp    DNA     linear   CON 24-MAY-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Heidelberg strain 5
            plasmid p1, complete sequence.
ACCESSION   NZ_CP031360
VERSION     NZ_CP031360.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09741727
            Assembly: GCF_003971525.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Heidelberg
  ORGANISM  Salmonella enterica subsp. enterica serovar Heidelberg
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2096)
  AUTHORS   Mesa,D. and Cardoso,R.
  TITLE     Salmonellas of broiler production
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2096)
  AUTHORS   Mesa,D. and Cardoso,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-JUL-2018) Biochemistry, UFPR, Centro Politecnico,
            Curitiba 81.531-980, Brazil
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 11-JUL-2017
            Assembly Method                   :: CLC NGS Cell v. 7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 33.0x
            Sequencing Technology             :: Illumina MiSeq; IonTorrent
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003971525.1-RS_2024_05_24
            Annotation Date                   :: 05/24/2024 01:52:15
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,843
            CDSs (total)                      :: 4,724
            Genes (coding)                    :: 4,572
            CDSs (with protein)               :: 4,572
            Genes (RNA)                       :: 119
            rRNAs                             :: 7, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 152
            CDSs (without protein)            :: 152
            Pseudo Genes (ambiguous residues) :: 0 of 152
            Pseudo Genes (frameshifted)       :: 61 of 152
            Pseudo Genes (incomplete)         :: 106 of 152
            Pseudo Genes (internal stop)      :: 30 of 152
            Pseudo Genes (multiple problems)  :: 36 of 152
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP031360.1.
            Bacteria and source DNA available from Imunova.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2096
                     /organism="Salmonella enterica subsp. enterica serovar
                     Heidelberg"
                     /mol_type="genomic DNA"
                     /strain="5"
                     /serovar="Heidelberg"
                     /isolation_source="cecum"
                     /host="chicken"
                     /sub_species="enterica"
                     /db_xref="taxon:611"
                     /plasmid="p1"
                     /geo_loc_name="Brazil:Santa Catarina"
                     /lat_lon="27.0547 S 52.3706 W"
                     /collection_date="2015-02-11"
                     /collected_by="Imunova"
     gene            complement(<1..133)
                     /locus_tag="DXF95_RS25420"
                     /old_locus_tag="DXF95_24160"
                     /pseudo=""
     CDS             complement(<1..133)
                     /locus_tag="DXF95_RS25420"
                     /old_locus_tag="DXF95_24160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001362017.1"
                     /note="incomplete; too short partial abutting assembly gap;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="Replication protein"
                     /name="Replication protein"
     gene            complement(1240..>2096)
                     /locus_tag="DXF95_RS23590"
                     /old_locus_tag="DXF95_24165"
     CDS             complement(1240..>2096)
                     /locus_tag="DXF95_RS23590"
                     /old_locus_tag="DXF95_24165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001362017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_164713393.1"
                     /translation="MALCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSL
                     MWQARFYQSLPRIVADYPDARWMFLTLTVRNCAIGELGEMLNRMNAAFQRMKVRKEFRP
                     VQGWIRTTEVTRGSDGSAHPHFHTLMMVPPGMLNGKSYVRHERWVELWRECLRVDYDPN
                     VDVRAVKPRKPKGGESLACATAELVRGAVAETLKYSTKPADMVADPEWFLELTRQTHKR
                     RFVATGGALKDVLKLDQETDADMVIGDDISEGDDDGSRIAFEWKTEVRKYRRSPTKDKT
                     ESG"
                     /name="protein rep"
     Typing          complement(1157..1238)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="93.976"
                     /coverage="90.0"
                     /evalue="3.4000000000000004e-27"
     Typing          1323..1514
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.964"
                     /coverage="100.0"
                     /evalue="6.14e-93"
ORIGIN
        1 gcgccccgta gcgctcatat tcggctgcaa gcaggtaaat ccctcccacg tcatcagaaa
       61 cgcttctgtg agcgtcccag ggcgcatctg agggggaata gtccgtgagg ttctggagat
      121 cagggttttt catgcgcacc acccgatagt gggcgatggc tcatctgacg tgttatcatt
      181 gccatatcac ctgttgtgtt agtcgtatca ccaattcgaa ttcctacagg tggtcacacc
      241 cccgaacgat tgccctcgtt gcgggggtcg cttttaatgc gaccactccc gacagaataa
      301 ctccaaaacc attttccgac aaatccccct tcaggccttg cggcacaagg gctggaggcg
      361 aatttgaatc ctagagttat cccttaagta taaatacaag gatcgcgcgc gagattcgct
      421 tgaattttga gcgggatttt cagtcaccca aaacacccaa ccccacccac ttacacccat
      481 ctcatccaca gactttcacc ccgattttgt gaacaacaaa aaaaaccgtc ttgcaggtgg
      541 ttggcctcac tgcgtgacac caaccaccat ccccagtgtt tttcccgtgc cgtcgtcaat
      601 cacaaaatcg gaacccacgc cggaggcgcg ggcccccgcg attttctgtt tgacgaatca
      661 gggaacggtg aacggtacgc ggaatttttt cgcgtaccgt gaggcgttgg cggggtgtcg
      721 gggcgcagtc ctgaccaggt tcgtagaacc gcacagggtt gcaaaggggt gtcccctttg
      781 gcacaagcga cggagcgaaa cgccccgttt tgtgtacgcc gcttatcgtg cctgtgtttt
      841 aggagaacaa aaaaatgccg tgcatacagc ccacacaatg acccacataa tcacccacaa
      901 ctcaaaacac acagcccaca caatcaccca cactttaacc cacaaaaaag accacaaccc
      961 cattgacacc ccacaaaaca acccacacaa acggcgagta aatcattttg ccgttttcgt
     1021 gccgcagccg ttccgcgcaa tcgacaaact ggcagtcagg gaatctcacg aagtgcgcac
     1081 ttatacaaac tcaccttagg ttcgtttgtc gtgcggtctg cgacgctcaa aaaaccgaga
     1141 aacggcggga attttcggga caggatgtgt aattgtaata ccgtcacacg cgacgctatc
     1201 acaattgcca tctggtcagg ggtgcacccc gacaccccgc tagcctgatt cagttttatc
     1261 tttcgtcggt gagcgacggt actttctgac ctcggttttc cactcgaacg cgattcgtga
     1321 accgtcatcg tcgccctcgg aaatatcatc accgatcacc atgtcggcgt cagtttcctg
     1381 atcgagtttc agcacgtctt tgagtgcgcc gccggtcgcc acaaagcggc gcttgtgcgt
     1441 ctggcgggtc agttcgagga accattcagg atcggccacc atgtcagccg gcttcgtgga
     1501 atatttcagg gtttcggcca ccgcaccgcg caccagttcg gcggtcgcgc aggccagcga
     1561 ttcgccgccc ttcggcttac gaggtttcac tgcccggaca tcaacattcg ggtcataatc
     1621 gacccgcaga cactcccgcc agagttcaac ccagcgttca tgcctgacgt aacttttccc
     1681 atttagcatg ccaggcggca ccatcatcag ggtgtggaag tgcgggtgtg cgctgccgtc
     1741 gctcccgcgg gtgacttccg tggtacgtat ccagccctgc acaggccgga actccttgcg
     1801 aaccttcatg cgctgaaaag ctgcattcat ccggttcagc atctcgccca gctccccgat
     1861 cgcacagttg cgcacggtca gagtcaggaa catccagcgg gcatcgggat aatccgccac
     1921 gatacgcggc agggactggt agaaacgggc ttgccacatc agggagcgcc tccactggca
     1981 gacaggacaa tgccggacac ggcagaaatg cgcctcacgc agcctcagac gcgtttctcc
     2041 ggtttccttg agggtagacc acccgaaacg cagtaaacca ccacagagag ccatac
//
