LOCUS       NZ_CP030793             2096 bp    DNA     circular CON 05-MAR-2024
DEFINITION  Escherichia coli APEC O2-211 plasmid pAPEC-O2-211C, complete
            sequence.
ACCESSION   NZ_CP030793
VERSION     NZ_CP030793.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03761814
            Assembly: GCF_001021635.2
KEYWORDS    RefSeq.
SOURCE      Escherichia coli APEC O2-211
  ORGANISM  Escherichia coli APEC O2-211
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 2096)
  AUTHORS   Nielsen,D.W., Mangiamele,P., Ricker,N., Barbieri,N.L., Allen,H.K.,
            Nolan,L.K. and Logue,C.M.
  TITLE     Complete Genome Sequence of Avian Pathogenic Escherichia coli Strain
            APEC O2-211
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2096)
  AUTHORS   Nielsen,D.W., Logue,C.M. and Nolan,L.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-JUN-2018) Population Health, University of Georgia,
            501 D.W. Brooks Drive, Athens, GA 30602, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 18-APR-2018
            Assembly Method                   :: Canu v. 1.5
            Assembly Name                     :: APEC O2-211
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 344.0x
            Sequencing Technology             :: PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 03/05/2024 04:28:40
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,228
            CDSs (total)                      :: 5,112
            Genes (coding)                    :: 4,849
            CDSs (with protein)               :: 4,849
            Genes (RNA)                       :: 116
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 263
            CDSs (without protein)            :: 263
            Pseudo Genes (ambiguous residues) :: 1 of 263
            Pseudo Genes (frameshifted)       :: 108 of 263
            Pseudo Genes (incomplete)         :: 173 of 263
            Pseudo Genes (internal stop)      :: 58 of 263
            Pseudo Genes (multiple problems)  :: 70 of 263
            Pseudo Genes (short protein)      :: 5 of 263
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP030793.1.
            Bacteria and source DNA available from Catherine Logue.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2096
                     /organism="Escherichia coli APEC O2-211"
                     /mol_type="genomic DNA"
                     /strain="APEC O2-211"
                     /isolation_source="Air sac"
                     /host="Gallus gallus"
                     /db_xref="taxon:1954351"
                     /plasmid="pAPEC-O2-211C"
                     /geo_loc_name="USA: Delaware"
                     /collection_date="1982"
                     /serogroup="O2"
     gene            83..1072
                     /locus_tag="APECO2_RS27825"
                     /old_locus_tag="APECO2_28925"
     CDS             83..1072
                     /locus_tag="APECO2_RS27825"
                     /old_locus_tag="APECO2_28925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001362017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_024136759.1"
                     /translation="MKNPDLQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MALCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDARWMFLTLTVRNCAIGELGEMLNRMNAAFQRMKVRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVRHERWVELWRECLRVDYDPNVDVRAVKPRKPKGG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPEWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVRKYRRSPTKDKTESG"
                     /name="protein rep"
     Typing          1075..1156
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="93.976"
                     /coverage="90.0"
                     /evalue="3.4000000000000004e-27"
     Typing          complement(799..990)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.964"
                     /coverage="100.0"
                     /evalue="6.14e-93"
ORIGIN
        1 attggtgata cgactaacac aacaggtgat atggcaatga taacacgtca gatgagccat
       61 cgcccactat cgggtggtgc gcatgaaaaa ccctgatctc cagaacctca cggactattc
      121 cccctcagat gcgccctggg acgctcacag aagcgtttct gatgacgtgg gagggattta
      181 cctgcttgca gccgaatatg agcgctacgg ggcgcgtatg gccctctgtg gtggtttact
      241 gcgtttcggg tggtctaccc tcaaggaaac cggagaaacg cgtctgaggc tgcgtgaggc
      301 gcatttctgc cgtgtccggc attgtcctgt ctgccagtgg aggcgctccc tgatgtggca
      361 agcccgtttc taccagtccc tgccgcgtat cgtggcggat tatcccgatg cccgctggat
      421 gttcctgact ctgaccgtgc gcaactgtgc gatcggggag ctgggcgaga tgctgaaccg
      481 gatgaatgca gcttttcagc gcatgaaggt tcgcaaggag ttccggcctg tgcagggctg
      541 gatacgtacc acggaagtca cccgcgggag cgacggcagc gcacacccgc acttccacac
      601 cctgatgatg gtgccgcctg gcatgctaaa tgggaaaagt tacgtcaggc atgaacgctg
      661 ggttgaactc tggcgggagt gtctgcgggt cgattatgac ccgaatgttg atgtccgggc
      721 agtgaaacct cgtaagccga agggcggcga atcgctggcc tgcgcgaccg ccgaactggt
      781 gcgcggtgcg gtggccgaaa ccctgaaata ttccacgaag ccggctgaca tggtggccga
      841 tcctgaatgg ttcctcgaac tgacccgcca gacgcacaag cgccgctttg tggcgaccgg
      901 cggcgcactc aaagacgtgc tgaaactcga tcaggaaact gacgccgaca tggtgatcgg
      961 tgatgatatt tccgagggcg acgatgacgg ttcacgaatc gcgttcgagt ggaaaaccga
     1021 ggtcagaaag taccgtcgct caccgacgaa agataaaact gaatcaggct agcggggtgt
     1081 cggggtgcac ccctgaccag atggcaattg tgatagcgtc gcgtgtgacg gtattacaat
     1141 tacacatcct gtcccgaaaa ttcccgccgt ttctcggttt tttgagcgtc gcagaccgca
     1201 cgacaaacga acctaaggtg agtttgtata agtgcgcact tcgtgagatt ccctgactgc
     1261 cagtttgtcg attgcgcgga acggctgcgg cacgaaaacg gcaaaatgat ttactcgccg
     1321 tttgtgtggg ttgttttgtg gggtgtcaat ggggttgtgg tcttttttgt gggttaaagt
     1381 gtgggtgatt gtgtgggctg tgtgttttga gttgtgggtg attatgtggg tcattgtgtg
     1441 ggctgtatgc acggcatttt tttgttctcc taaaacacag gcacgataag cggcgtacac
     1501 aaaacggggc gtttcgctcc gtcgcttgtg ccaaagggga cacccctttg caaccctgtg
     1561 cggttctacg aacctggtca ggactgcgcc ccgacacccc gccaacgcct cacggaacgc
     1621 gaaaaaattc cgcgtaccgt tcaccgttcc ctgattcgtc aaacagaaaa tcgcgggggc
     1681 ccgcgcctcc ggcgtgggtt ccgattttgt gattgacgac ggcacgggaa aaacactggg
     1741 gatggtggtt ggtgtcacgc agtgaggcca accacctgca agacggtttt ttttgttgtt
     1801 cacaaaatcg gggtgaaagt ctgtggatga gatgggtgta agtgggtggg gttgggtgtt
     1861 ttgggttact gaaaatcccg ctcaaaattc aagcgaatct cgcgcgcgat ccttgtattt
     1921 atacttaagg gataactcta ggattcaaat tcgcctccag cccttgtgcc gcaaggcctg
     1981 aagggggatt tgtcggaaaa tggttttgga gttattctgt cgggagtggt cgcattaaaa
     2041 gcgacccccg caacgagggc aatcgttcgg gggtgtgacc acctgtagga attcga
//
