LOCUS       NZ_CP030748             2503 bp    DNA     circular CON 26-JAN-2024
DEFINITION  Klebsiella pneumoniae strain B1 plasmid pKpnB1_7, complete sequence.
ACCESSION   NZ_CP030748
VERSION     NZ_CP030748.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09519599
            Assembly: GCF_024585245.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2503)
  AUTHORS   Johnning,A., Karami,N., Tang-Hallback,E., Muller,V., Westerlund,F.,
            Adlerberth,I. and Kristiansson,E.
  TITLE     Genome dynamics of NDM-producing Klebsiella pneumoniae isolated from
            a long-term colonised patient
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2503)
  AUTHORS   Johnning,A., Karami,N., Tang-Hallback,E., Muller,V., Westerlund,F.,
            Adlerberth,I. and Kristiansson,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-JUL-2018) Department of Mathematical Sciences,
            Chalmers University of Technology, Department of Mathematical
            Sciences, Gothenburg SE-412 96, Sweden
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 20-JAN-2018
            Assembly Method                   :: Unicycler v. 0.4.1
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 139x
            Sequencing Technology             :: Illumina MiSeq; Pacbio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/24/2024 16:46:21
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,797
            CDSs (total)                      :: 5,677
            Genes (coding)                    :: 5,545
            CDSs (with protein)               :: 5,545
            Genes (RNA)                       :: 120
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 132
            CDSs (without protein)            :: 132
            Pseudo Genes (ambiguous residues) :: 0 of 132
            Pseudo Genes (frameshifted)       :: 52 of 132
            Pseudo Genes (incomplete)         :: 79 of 132
            Pseudo Genes (internal stop)      :: 16 of 132
            Pseudo Genes (multiple problems)  :: 13 of 132
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP030748.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2503
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="B1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="pKpnB1_7"
                     /geo_loc_name="Sweden: Gothenburg"
                     /lat_lon="57.6823 N 11.9613 E"
                     /collection_date="2013-01-23"
                     /collected_by="Clinical Microbiology Laboratory,
                     Sahlgrenska University Hospital"
     gene            1159..1917
                     /locus_tag="DR188_RS28910"
                     /old_locus_tag="DR188_29910"
     CDS             1159..1917
                     /locus_tag="DR188_RS28910"
                     /old_locus_tag="DR188_29910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016235141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_257159126.1"
                     /translation="MTPFWKPMPYYALREKEVLKLFKRNNLSSSIAAIKIYILICLTSN
                     LDENGNYCTSLTYDQLTKYASLSRKLVSNGLKKLYELELLNFEGDKKKKYYLMGVKRAG
                     KVFSETRFKSSQGYWAKLPFAGFVDGSGRITAFESMSNRSPVELNSLKLFIYLLSIRSK
                     DQVSISVTLSKIRSKLDISFQDIMIAIGFMQSIGMLYKVNLGVNTISNYDAAFSINFLV
                     CGWESLEWKPTYLSHDEWKNKMLAKMFPEK"
                     /name="hypothetical protein"
     Typing          2206..2302
                     /name="ColRNAI_rep_cluster_1857"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="87.755"
                     /coverage="89.0"
                     /evalue="3.35e-23"
ORIGIN
        1 cggagcctat ggaaaaccgg cagccctcaa gccacttctc acacttcata cctcatactt
       61 ccatgccttt tgattgatcc cgtaacgctc gccgcagagt catgaccgaa cgcagtgaga
      121 gaatgaccga ggaagcgtaa tttctccggt gctcgcgcag gctcctgtcg ctccgtactg
      181 ttatctttca ccacttaccc tttctgcatg aactgatgcg gacaggaaat gttttgtggc
      241 caccgccgct tcgccggcgc cacaaaacgg ttggacaaga tgtgtttttg gagtaccgcc
      301 ggcaccaaaa acatttcatc aggcacagcc cgataccctg aatttcgtcc ggacgaaatt
      361 tcactgctgt tacgatcgag ggcaggattc gcaaaggggt agcggatgcc accatttgct
      421 gcgatgcagg atagggcaag cgcttccaaa tgacgtcatt tgaaagtgct tgccccgaaa
      481 acagaatgtt ttctcctgag cctgcagctg gctctcagaa cccctaccgc ctcgctaggc
      541 tcgttgctca acgcctcacg accgcacagt gaactgcgcg tccgttcacc gttatcggaa
      601 atgaccgttt cccgtaaaaa cgcggcttta gtgccagcat ccgtgcgaaa ccgtccgcca
      661 ttcacccgcg tgcatagtca tgcagccgcg cagaactcat caggggcgtt tttcaagggt
      721 ttggacaggg aaaggtgccg gaaacggccc ggacgcgcca ggatcgcgct gagggcctct
      781 cagaaggtgc gggcaaggga tgttatggta aataggactc tgatatgaag atcacccagg
      841 catgatgctg ctattaatgg attacgtgca ctattctggt attaacatga actattattt
      901 ttatacaatg tcctgataat acttattttt tagtgtgcgc ttattctaga aagatttaac
      961 cctaaagact gtaagtcttt agggttcctg gtcataattt taaaaaacgc attcatgacc
     1021 actgggagat tgattatgtc acctgaaaac tgggtagctt tacttgagcg cattgctcgt
     1081 atctcgatgg atttatcgcg gctgattctg tcagtggtca tgctgctgat ttgtctacac
     1141 atgtattttg gaggataaat gactcccttt tggaagccca tgccttatta cgctcttcga
     1201 gaaaaagaag ttttaaaact tttcaagagg aataatttat cttcaagcat tgctgccatt
     1261 aaaatatata ttttaatttg cttaactagc aacttagatg aaaatgggaa ctattgtacc
     1321 tctttgactt atgaccaatt gaccaagtac gcctcgctta gccgtaagtt ggtcagcaat
     1381 ggtttgaaaa aactatatga attggagttg ctgaattttg agggtgacaa aaagaaaaaa
     1441 tattatttga tgggtgtgaa gagagctggg aaggtttttt cagaaaccag attcaagtca
     1501 tcacaaggat actgggcaaa actgccgttt gctgggtttg tagatggttc tggtaggatt
     1561 acagcatttg agtcaatgag caatcgaagt ccagtcgagc taaattcgct aaagcttttt
     1621 atttatttgt tatctatcag atcaaaagat caggtttcta ttagtgtgac gttaagtaag
     1681 ataaggtcaa agttagatat ttcattccag gatataatga ttgcgatagg tttcatgcag
     1741 tcaataggca tgctttataa ggttaatctc ggcgttaaca ctatatctaa ctacgatgct
     1801 gccttttcca taaattttct tgtttgcgga tgggagagtc tggagtggaa gcccacttat
     1861 ctttctcatg atgaatggaa aaataagatg ttagcaaaaa tgtttcctga aaaatgatgc
     1921 ttttttttga ctaatctcga gcttagaagg aagcctgact ccttgaccgc taaccatttt
     1981 aaagcgtatc ttagccttga aacgaaaaaa ccacccggca aggtggtttt ttcgaaggtt
     2041 cgcaagagtt gacgctcttt tgaaccgcgg taactggctt ggaggagcac agtcaccaaa
     2101 actgtccttt cagtgtagcc ttatcgcacc cgaaacttca agactctcct cctctaaacc
     2161 tgttaccagt ggctaccgcc agtggcgctt tgtcgtgtct gtcagggttg gattcaagag
     2221 tacagttacc tgataaagac gcggtagtcg ggttgaacgg ggagttcgtg catacagccc
     2281 agcttggagc gaaccaccta caaggaaccc agttgcacgg gtaggaatga gaaaacgcca
     2341 ccttacggcg gtctgcaacg ggtaaacctc agggtgggaa caggagagcg cacgagggag
     2401 cgacccatcg gaaacggtgg ggatctttaa gtcctgtcgg gtttcgcccc ttctgatttg
     2461 agtaccggag atcacctgat ttctgaggag ctcgtcagga ggg
//
