LOCUS       NZ_CP030747             2509 bp    DNA     circular CON 26-JAN-2024
DEFINITION  Klebsiella pneumoniae strain B1 plasmid pKpnB1_6, complete sequence.
ACCESSION   NZ_CP030747
VERSION     NZ_CP030747.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09519599
            Assembly: GCF_024585245.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2509)
  AUTHORS   Johnning,A., Karami,N., Tang-Hallback,E., Muller,V., Westerlund,F.,
            Adlerberth,I. and Kristiansson,E.
  TITLE     Genome dynamics of NDM-producing Klebsiella pneumoniae isolated from
            a long-term colonised patient
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2509)
  AUTHORS   Johnning,A., Karami,N., Tang-Hallback,E., Muller,V., Westerlund,F.,
            Adlerberth,I. and Kristiansson,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-JUL-2018) Department of Mathematical Sciences,
            Chalmers University of Technology, Department of Mathematical
            Sciences, Gothenburg SE-412 96, Sweden
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 20-JAN-2018
            Assembly Method                   :: Unicycler v. 0.4.1
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 139x
            Sequencing Technology             :: Illumina MiSeq; Pacbio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/24/2024 16:46:21
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,797
            CDSs (total)                      :: 5,677
            Genes (coding)                    :: 5,545
            CDSs (with protein)               :: 5,545
            Genes (RNA)                       :: 120
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 132
            CDSs (without protein)            :: 132
            Pseudo Genes (ambiguous residues) :: 0 of 132
            Pseudo Genes (frameshifted)       :: 52 of 132
            Pseudo Genes (incomplete)         :: 79 of 132
            Pseudo Genes (internal stop)      :: 16 of 132
            Pseudo Genes (multiple problems)  :: 13 of 132
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP030747.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2509
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="B1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="pKpnB1_6"
                     /geo_loc_name="Sweden: Gothenburg"
                     /lat_lon="57.6823 N 11.9613 E"
                     /collection_date="2013-01-23"
                     /collected_by="Clinical Microbiology Laboratory,
                     Sahlgrenska University Hospital"
     gene            complement(210..359)
                     /locus_tag="DR188_RS28900"
     CDS             complement(210..359)
                     /locus_tag="DR188_RS28900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017880354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_165453402.1"
                     /translation="MPSEYDEQLDSTGTQLPGEYDLFDLMAQVTEENLHAPVDFGPPVG
                     REAL"
                     /name="hypothetical protein"
     gene            930..1073
                     /locus_tag="DR188_RS29005"
                     /old_locus_tag="DR188_29895"
     CDS             930..1073
                     /locus_tag="DR188_RS29005"
                     /old_locus_tag="DR188_29895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001326446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_074192474.1"
                     /translation="MHEPPVQSDRCAFSGNYHLESNPERHDKTPLAAATGNGFAEQRSV
                     EV"
                     /name="replication initiation protein"
     gene            complement(1265..1945)
                     /locus_tag="DR188_RS28905"
                     /old_locus_tag="DR188_29900"
     CDS             complement(1265..1945)
                     /locus_tag="DR188_RS28905"
                     /old_locus_tag="DR188_29900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001572662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_087855895.1"
                     /translation="MGRKSREKKERHIKDRAIPLKVYRFFKEKSHAEALCNGDVWLSTI
                     ETCRRYEDPLQGDPDEAIQTYNSGFISGGSDDSRFVSAAAHAGIHIGPGCSGITIQNCR
                     SFNKMPDAFVLCTTLEFQPENLNDTFGNYCVEISNVEEFFGLITKKLKGLLPIKLGAMG
                     VVRYGSNSFYGYQPPPGQIGFVKNRDKYSSQKEFRFLWVPETFDIQPRLVKCPELSYCC
                     RMIS"
                     /name="hypothetical protein"
     Typing          complement(395..568)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="97.714"
                     /coverage="100.0"
                     /evalue="1.2e-79"
     Typing          535..1039
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="94.071"
                     /coverage="96.0"
                     /evalue="0.0"
ORIGIN
        1 gccagaatga taattttttg ccccttaaat ggtcatacac catacgcaac cgcgattttc
       61 atcgcaattg catgaattaa aaggtaaaaa ctgaagtccc cgtttattta tgtaatacgc
      121 aacgtattac aaccacctgt aatcacatga aaataaagaa ataagatgta ataccggcgt
      181 attaccacgt acatgggtaa gcgaaaaagc tataacgctt cacggccgac aggcggccca
      241 aaatccaccg gggcgtgcag gttctcttca gtaacctgcg ccattaaatc aaaaaggtca
      301 tattcgccgg gaagctgcgt accagtcgaa tccagttgtt catcatattc agatggcatg
      361 gggtgatatc caatagctga gaggttgtta gagggtttcg gggcgcagcc ctgaaccagt
      421 cacgtagcgc tagcagagtg tatactggct tactatgttg gcactgatga ggatgtcagt
      481 gaagtgcttc atgtggcagg agaaaaaagg ctgcaccggt gcgtcagcag aatatgtgat
      541 acaggatata ttccgcttcc tcgctcactg actcgctacg ctcggtcgtt cgactgcggc
      601 gagcggaaat ggcttacgaa cggggcagag atttcctgga agatgccagg aagagactta
      661 acagggaaac gacagggccg cggcgaagcc gtttttccat aggctccgcc cccctgacaa
      721 gcatcacgaa atctgacgct caaatcagtg gtggcgaaac ccgacaggac tataaagata
      781 ccaggcgttt ccccctggcg gctccctcgt gcgctctcct gttcctgcct ttcggtttac
      841 cggtgtcatt ccgctgttat ggccgcgttt gtctcattcc acgcctgaca ctcagttccg
      901 ggtaggcagt tcgctccaag ctggactgta tgcacgaacc ccccgttcag tccgaccgct
      961 gcgccttctc cggtaactat catcttgagt ccaacccgga gaggcacgac aaaacgccac
     1021 tggcagcagc cactggtaac ggattcgcag aacaaagaag tgttgaagtg tgaggtgaag
     1081 tacagctaca ctgtaataac taatttggtt tctgtgctct gcgaaagcca gttacctcgg
     1141 ttcaaagagt tgctgctcta agaaccttca aaaggaccgc cttgctgggc ggtctttttg
     1201 tttccaaagg agattacgct ggtaacgtaa tctcagtcaa gaattacact atgaaaaatg
     1261 tcatctaaga tatcattcgg caacaatatg aaagctcagg gcatttgacc aacctgggtt
     1321 gaatatcaaa tgtttctggc acccaaagaa atctgaattc tttctgcgaa gaatatttat
     1381 ctcgattttt tacaaaccca atctgtcccg gtggaggctg gtaaccataa aaagaattac
     1441 tcccatacct gaccaccccc atagcaccta gttttatagg taataacccc tttaactttt
     1501 tagtaataag accaaaaaac tcttcaacat ttgatatttc cacacagtaa tttccaaagg
     1561 tatcgttcaa gttttctggc tgaaattcca gtgtcgtaca taaaacaaag gcgtcgggca
     1621 tcttattaaa agagcgacaa ttttgtatcg ttattccact acagccaggt ccaatatgga
     1681 ttccggcatg agctgcagca gagacaaaac ggctgtcatc actgccccct gagataaaac
     1741 ccgagttata ggtttgaatt gcttcatccg gatctccctg tagggggtct tcgtatcgcc
     1801 tacacgtttc aatagtgctc agccaaacat cgccattgca caatgcctca gcatgactct
     1861 tctctttaaa aaacctatat actttaaggg ggatggctct atctttaata tgcctttctt
     1921 ttttctctct acttttccta cccattgcaa aatatccttt ttaaattttc atttaccata
     1981 acatccgttg cgtgcaccgc ctcagaggct ctcagggcgt ttctgacggg aaaccggtaa
     2041 aacaggcaac aaaccacccg aaaacccgcc agaaacgcgc aggctctgtt tttacggcat
     2101 gcatgagtat gcgcgcaagt gcatagcgca gaatttcacg ccgtgcagcc agtggaagtc
     2161 ctgttttcga cgttcttctc atccgaaaac ggtgaacggg gacgcaattt attgcgtggc
     2221 cgtgaggtgt tggcaagaac atcaagcatg aagataaggg ggtcggatgt acgaatggtt
     2281 cagagaactg ttctgacgta attcagtagt aaatcagtag taaatcagta gtagataagt
     2341 agtcatcctc ctccgatttg tagtaattca gtagtaatgc tgtagtagtt tcacttccgc
     2401 tttgtagttt acctgtagtc cggaaaaata atccgttcat actcgcatga acgaggtcgt
     2461 taggacgctt tttcgttacc gatgcccctt aacctgcgca gatcaccca
//
