LOCUS       NZ_CP030349             1917 bp    DNA     circular CON 22-APR-2024
DEFINITION  Enterobacter hormaechei strain AR_038 plasmid unnamed4, complete
            sequence.
ACCESSION   NZ_CP030349
VERSION     NZ_CP030349.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04014879
            Assembly: GCF_003288475.1
KEYWORDS    RefSeq.
SOURCE      Enterobacter hormaechei
  ORGANISM  Enterobacter hormaechei
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.
REFERENCE   1  (bases 1 to 1917)
  AUTHORS   Benahmed,F.H., Lutgring,J.D., Yoo,B., Machado,M., Brown,A.,
            Mcallister,G., Perry,A., Halpin,A.L., Vavikolanu,K., Ott,S.,
            Zhao,X., Tallon,L.J., Sadzewicz,L., Aluvathingal,J., Nadendla,S.,
            Voskania-Kordi,A., Simonyan,V., Patel,J. and Shawar,R.M.
  TITLE     FDA/CDC Antimicrobial Resistant Isolate Bank Genome Sequencing
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1917)
  AUTHORS   Benahmed,F.H., Lutgring,J.D., Yoo,B., Machado,M., Brown,A.,
            Mcallister,G., Perry,A., Halpin,A.L., Vavikolanu,K., Ott,S.,
            Zhao,X., Tallon,L.J., Sadzewicz,L., Aluvathingal,J., Nadendla,S.,
            Voskania-Kordi,A., Simonyan,V., Patel,J. and Shawar,R.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JUN-2018) Center for Devices and Radiological Health,
            US Food and Drug Administration, 10903 New Hampshire Avenue, Silver
            Spring, MD 20993-0002, USA
COMMENT     ##Taxonomic-Update-Statistics-START##
            This Genome (query)               :: GCA_003288475.1
            Current Name                      :: Enterobacter hormaechei
            Previous Name                     :: Enterobacter cloacae
            Date Updated                      :: 2019-03-07
            Analysis Type :: Average Nucleotide Identity (ANI)
            Analysis 1 (A1) :: Query vs. TYPE genome for current name
            A1 Genome (subject)               :: GCA_001729725.1
            A1 Name                           :: Enterobacter hormaechei
            A1 ANI                            :: 99.04115%
            A1 Query Coverage                 :: 81.64%
            A1 Subject Coverage               :: 90.24%
            Analysis 2 (A2) :: Query vs. TYPE genome for previous name
            A2 Genome (subject)               :: GCA_000025565.1
            A2 Name                           :: Enterobacter cloacae
            A2 ANI                            :: 87.62986%
            A2 Query Coverage                 :: 75%
            A2 Subject Coverage               :: 70.81%
            ##Taxonomic-Update-Statistics-END##
            ##Genome-Assembly-Data-START##
            Assembly Method :: SMRT v. 2.3.0; HGAP v. 3.0; SPAdes v. 3.6.0
            Genome Coverage                   :: 13.96x
            Sequencing Technology             :: Pacbio; Illumina
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003288475.1-RS_2024_04_22
            Annotation Date                   :: 04/22/2024 02:58:36
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,217
            CDSs (total)                      :: 5,103
            Genes (coding)                    :: 4,978
            CDSs (with protein)               :: 4,978
            Genes (RNA)                       :: 114
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 125
            CDSs (without protein)            :: 125
            Pseudo Genes (ambiguous residues) :: 0 of 125
            Pseudo Genes (frameshifted)       :: 46 of 125
            Pseudo Genes (incomplete)         :: 74 of 125
            Pseudo Genes (internal stop)      :: 16 of 125
            Pseudo Genes (multiple problems)  :: 10 of 125
            Pseudo Genes (short protein)      :: 1 of 125
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP030349.1.
            The organism was changed from 'Enterobacter cloacae' to
            'Enterobacter hormaechei' in March 2019.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1917
                     /organism="Enterobacter hormaechei"
                     /mol_type="genomic DNA"
                     /strain="AR_038"
                     /db_xref="taxon:158836"
                     /plasmid="unnamed4"
     gene            complement(215..517)
                     /locus_tag="CSB67_RS26115"
     CDS             complement(215..517)
                     /locus_tag="CSB67_RS26115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005161566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TM2 domain-containing protein"
                     /protein_id="WP_031942343.1"
                     /translation="MSSMVYCRGCGKEIHETAKSCPHCGATNASSGSGEKSRIAAALLA
                     FFLGGFGAHKFYLGKIGQGFLYLIFCWTFIPAIIAFIEFIIYLCDSDEKFARKYG"
                     /name="TM2 domain-containing protein"
     gene            complement(826..939)
                     /locus_tag="CSB67_RS26125"
                     /old_locus_tag="CSB67_0010"
     CDS             complement(826..939)
                     /locus_tag="CSB67_RS26125"
                     /old_locus_tag="CSB67_0010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_032634168.1"
                     /translation="MHEPPVQSDCCALSGNYRLESNPERHAKAPLAAATGN"
                     /name="hypothetical protein"
     gene            1640..1876
                     /locus_tag="CSB67_RS26135"
     CDS             1640..1876
                     /locus_tag="CSB67_RS26135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001676031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_031942344.1"
                     /translation="MTRLTNLTPAEKQFLDDAVAAAERASGKKLNQPNRHIVLNRARAQ
                     IESQRHADRQRALREEERQQAEFTWSRPRSPRR"
                     /name="hypothetical protein"
     Typing          1301..1474
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.5600000000000002e-86"
     Typing          complement(831..1315)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.648"
                     /coverage="80.0"
                     /evalue="0.0"
ORIGIN
        1 tgcaggcaag gcatttccgt gcatagccat gcagacgcgc agaaatcatc aggaacgttt
       61 ttcggggttt tccccgggga aaggtgccgg aaatcggcat gaggccgcag aaacgcgctg
      121 agagcgtctt aggcggtacc gataagggat gttatggtaa atgtgcctca cagactggta
      181 caaaaaaagc cccgcagggc ttttttgcta tgagttagcc atattttctt gcgaattttt
      241 catcggaatc gcatagataa ataataaact caataaacgc gatgatcgcg ggtatgaatg
      301 tccagcaaaa aattagatac aggaatccct gtcctatttt acctaagtaa aatttatgtg
      361 cgccaaatcc accaaggaag aatgctaata gcgcggctgc gattctactt ttttcacctg
      421 aacctgaaga ggcgtttgtg gctccgcagt gtgggcatga ctttgctgtt tcgtgtattt
      481 ccttgccgca tcctcggcag taaaccattg aactcatttt ttatcctcga gcttattttt
      541 agttgggatg cataatatcc aatgttttat aacgatatgc atcctatatg ctcgggtggg
      601 atagatttcc attatggtga aggatcttct tgagatcctt tctgtagcgt cgtaatctct
      661 tgctctggaa acgaaaaaac cgccctgcaa ggcggttttt cgaaggttct ctgagctact
      721 aactctttga accgaggtaa ctggcttgga ggagcgcagt caccaaaact tgtcctttca
      781 gtttagcctt aaccggcgca taacttcaag actaactcct ctaaatcagt taccagtggc
      841 tgctgccagt ggcgcttttg catgtctttc cgggttggac tcaagacgat agttaccgga
      901 taaggcgcag cagtcggact gaacgggggg ttcgtgcata cagtccagct tggagcgaac
      961 tgcctacccg gaactgagtg tcaggcgtgg aatgagaaac cgcggccata acagcggaat
     1021 gacaccggta aaccgaaagg caggaacagg agagcgcacg agggagctac cagggggaaa
     1081 cccttgggat ctttatagtc ctgtcgggtt tcgccgccac tgatttgagc gtcagatttc
     1141 gtgatgcttg tcaggggggc ggagcctatg gaaaaacggc ttcgccgcag cctcatcgtt
     1201 tccctgttaa gttccttcct ggcatccacc aggaaatttc cacctcaccc gtaagccggt
     1261 accgctcgcc gcagccgaac gaccgagcgc agcgagtcag tgagcgagga agcggcacat
     1321 ctcccgttac tacatgttct gctgacgcgc cggtgccgcc tttttctcct gctacatgaa
     1381 gcacttcact gacatccgca tccgtgccaa catattaagc cagtatacac tccgctagcg
     1441 ctacgtgact ggttcagggc tgcgccccga aacccgccag gaccactggc gcgcctgacg
     1501 gcttgcccaa cgcttcacgg cacctgatta aaatccgctc ccgttcaccg tttctgatgg
     1561 ttctgacatt ccgccgctgc ttcattgctt ccaccttgtc tggcagactg gccagcgtga
     1621 tgctgaacag gagacctaca tgacgcgact gaccaatctg acgccggcag agaagcaatt
     1681 tcttgatgat gctgttgcag ctgcagagcg tgcttccggc aagaaactca accagccgaa
     1741 ccgacatatc gtgctcaacc gggcaagagc gcagattgag tcgcagcggc acgccgaccg
     1801 gcagcgcgct ctacgtgagg aagaacggca gcaggccgaa tttacctggt cacgtccgcg
     1861 atcgccgcgc cggtgagtgg ctgttatgag gtttctgctg cagttttgtg atgaaac
//
