LOCUS       NZ_CP030348             2089 bp    DNA     circular CON 22-APR-2024
DEFINITION  Enterobacter hormaechei strain AR_038 plasmid unnamed3, complete
            sequence.
ACCESSION   NZ_CP030348
VERSION     NZ_CP030348.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04014879
            Assembly: GCF_003288475.1
KEYWORDS    RefSeq.
SOURCE      Enterobacter hormaechei
  ORGANISM  Enterobacter hormaechei
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.
REFERENCE   1  (bases 1 to 2089)
  AUTHORS   Benahmed,F.H., Lutgring,J.D., Yoo,B., Machado,M., Brown,A.,
            Mcallister,G., Perry,A., Halpin,A.L., Vavikolanu,K., Ott,S.,
            Zhao,X., Tallon,L.J., Sadzewicz,L., Aluvathingal,J., Nadendla,S.,
            Voskania-Kordi,A., Simonyan,V., Patel,J. and Shawar,R.M.
  TITLE     FDA/CDC Antimicrobial Resistant Isolate Bank Genome Sequencing
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2089)
  AUTHORS   Benahmed,F.H., Lutgring,J.D., Yoo,B., Machado,M., Brown,A.,
            Mcallister,G., Perry,A., Halpin,A.L., Vavikolanu,K., Ott,S.,
            Zhao,X., Tallon,L.J., Sadzewicz,L., Aluvathingal,J., Nadendla,S.,
            Voskania-Kordi,A., Simonyan,V., Patel,J. and Shawar,R.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JUN-2018) Center for Devices and Radiological Health,
            US Food and Drug Administration, 10903 New Hampshire Avenue, Silver
            Spring, MD 20993-0002, USA
COMMENT     ##Taxonomic-Update-Statistics-START##
            This Genome (query)               :: GCA_003288475.1
            Current Name                      :: Enterobacter hormaechei
            Previous Name                     :: Enterobacter cloacae
            Date Updated                      :: 2019-03-07
            Analysis Type :: Average Nucleotide Identity (ANI)
            Analysis 1 (A1) :: Query vs. TYPE genome for current name
            A1 Genome (subject)               :: GCA_001729725.1
            A1 Name                           :: Enterobacter hormaechei
            A1 ANI                            :: 99.04115%
            A1 Query Coverage                 :: 81.64%
            A1 Subject Coverage               :: 90.24%
            Analysis 2 (A2) :: Query vs. TYPE genome for previous name
            A2 Genome (subject)               :: GCA_000025565.1
            A2 Name                           :: Enterobacter cloacae
            A2 ANI                            :: 87.62986%
            A2 Query Coverage                 :: 75%
            A2 Subject Coverage               :: 70.81%
            ##Taxonomic-Update-Statistics-END##
            ##Genome-Assembly-Data-START##
            Assembly Method :: SMRT v. 2.3.0; HGAP v. 3.0; SPAdes v. 3.6.0
            Genome Coverage                   :: 13.96x
            Sequencing Technology             :: Pacbio; Illumina
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003288475.1-RS_2024_04_22
            Annotation Date                   :: 04/22/2024 02:58:36
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,217
            CDSs (total)                      :: 5,103
            Genes (coding)                    :: 4,978
            CDSs (with protein)               :: 4,978
            Genes (RNA)                       :: 114
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 125
            CDSs (without protein)            :: 125
            Pseudo Genes (ambiguous residues) :: 0 of 125
            Pseudo Genes (frameshifted)       :: 46 of 125
            Pseudo Genes (incomplete)         :: 74 of 125
            Pseudo Genes (internal stop)      :: 16 of 125
            Pseudo Genes (multiple problems)  :: 10 of 125
            Pseudo Genes (short protein)      :: 1 of 125
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP030348.1.
            The organism was changed from 'Enterobacter cloacae' to
            'Enterobacter hormaechei' in March 2019.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2089
                     /organism="Enterobacter hormaechei"
                     /mol_type="genomic DNA"
                     /strain="AR_038"
                     /db_xref="taxon:158836"
                     /plasmid="unnamed3"
     gene            667..903
                     /locus_tag="CSB67_RS26105"
                     /old_locus_tag="CSB67_0007"
     CDS             667..903
                     /locus_tag="CSB67_RS26105"
                     /old_locus_tag="CSB67_0007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001676031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001676031.1"
                     /translation="MNRLTNLTPAEKKFLDDAIAAAERASGKKLNQPNRHIVLNRARAQ
                     IESQRYADRQRALREDERQQSEFAWSRPRAPRR"
                     /name="hypothetical protein"
     gene            1162..1455
                     /locus_tag="CSB67_RS26110"
     CDS             1162..1455
                     /locus_tag="CSB67_RS26110"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_123874500.1"
                     /translation="MFEEQRFLAGEKQFCKRWYIDMSSFGINPGKTPGNKRNIPDVTYF
                     HFCQQHPPPTPENKKAACSIGKPYIKGNYVLRFVLNRDALLLRITNQIIHVL"
                     /name="hypothetical protein"
     Typing          431..509
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="93.75"
                     /coverage="99.0"
                     /evalue="4.62e-25"
ORIGIN
        1 gtagagccag cttctttccc gagctggtca ggttcccacc gcttgcctgt ttatcctgcc
       61 ggagtccggg gcgtagacct gagagtcaag gtgcagatat gggtttaatg tcgttgaatg
      121 gtattaagct ggtagtgaca ttcctagcca gccctgctag gatttgattg cggtctgatc
      181 cgagcaggta tctgcacgaa ttagagtact caagccctgt gattctgtca cggggctttt
      241 gtacatctag agccagaaaa atcattatca ctcagtcaga tcaccgcaac gcccgccaca
      301 gcttcatgac cgaacgtagt gagcgaatga gcgaggaggc gtcattttca ccgtccgccc
      361 atcattctgc ttatgcttcg aagccgcatt ttcctctgcc acatagcccg atttccgtca
      421 atttcctcac agtgttaaaa tagataagcc agtatacact ccgctagcgc tgcgtgactg
      481 gttcagggct gcgccccgaa acccgctaaa accactgacg cgcctgcggc ttgcccaacg
      541 tctcacgtca ccggattaaa atccgctccc gttcaccgtt tctggctgtc tttcagcacc
      601 gccagcgctt catcggttct gctgtgtctg gcagactgtg cggagttatt ctgacgggag
      661 aatgctatga acagactgac aaacctgaca cctgcagaga aaaaatttct tgatgatgct
      721 attgccgcag ctgagagagc gtcaggcaaa aagctaaatc agccgaaccg gcatatcgtc
      781 ctgaacagag cgcgtgcgca gattgagtcg cagcgttacg ccgaccgcca gcgtgcatta
      841 cgtgaggatg agcggcagca gtccgagttt gcctggtcac gtccgcgcgc gccgcgccgc
      901 tgattgcgcc ttttggcggt ttagtggtgc tgacactccg aaatcgtctg ccattcaccc
      961 gcgtgcatag ccatgcagtc gcgcagaaat catcaggtgc gtttttcagg gttatggcca
     1021 gggaaaggtg ctggaaatgg ctaactcgtt acagagtggc gctgagggcc tttcaggcgg
     1081 tgcgggcaac ggatgttatg gtaaatccgg tggctttgac gtgcctgccg ttgtgtaccg
     1141 tcgtgagtga aaataattat attgttcgaa gaacagcgct ttttggccgg agaaaagcag
     1201 ttctgcaaac gatggtatat cgatatgagt tcttttggca ttaatccagg caagacgccg
     1261 ggcaataagc gtaatattcc ggatgttact tatttccatt tctgtcaaca gcatcccccc
     1321 cccacgccgg agaataaaaa agccgcctgt tccatcggca agccctacat caagggaaac
     1381 tacgtcttac gattcgtttt gaaccgggac gctttgttgc tgcgaatcac taaccagata
     1441 atccacgttt tgtgagtggg tttaggttaa ggcttcaata gaacaataat agcgttaagt
     1501 gattagggca acctgtgatt gctaaaatga tgaagtcttc acatcatttc ggtgaaggcg
     1561 atatgtgtta caccacgtat tgagagacct gcatgccctt tacaggtgaa cgggaacggg
     1621 aatagagcgg cgatttaggg gtcagtttgg atatagagaa ttattgtacg gtaagcctgt
     1681 tttttgaaca gacttaccta tagcaatagg gtgtactccc gcgctataca gcgttttcag
     1741 gggattttgt cttaatcgga taacctaaat gcgatacagc aagagcgaca acctaaaagc
     1801 gatagccact gacgataaat caatcactta cgtatccgaa ttggttgaat aatgtgctca
     1861 acgtacaaaa atttccgatc tccaaactga cccctattag ggcaaagaaa gcctaatgcc
     1921 cccgtggtgg gtacaccaga aaacggggag cgaagcgacc agcatcaggc cgttcgtatg
     1981 ctgcttcgat tttgtgggtg ttgcgccaga ccttggcaat cacgcttcac cgcaaccgct
     2041 gccttcactc tcactttatc aggtacgtta ttggttaacg tgagaccgg
//
