LOCUS       NZ_CP030230             2699 bp    DNA     circular CON 14-MAY-2024
DEFINITION  Salmonella enterica strain SA20041605 plasmid pSA20041605.5,
            complete sequence.
ACCESSION   NZ_CP030230
VERSION     NZ_CP030230.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06045058
            Assembly: GCF_003325255.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2699)
  AUTHORS   Nash,J.H.E., Robertson,J. and Bessonov,K.
  TITLE     Completed Genome Sequences of 32 Strains from Various Serotypes of
            Salmonella enterica
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2699)
  AUTHORS   Nash,J.H.E., Robertson,J. and Bessonov,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-JUN-2018) Public Health Agency of Canada, National
            Microbiology Laboratory at Guelph, 110 Stone Road West, Guelph,
            Ontario N1G3W4, Canada
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: MAY-2018
            Assembly Method                   :: unicycler v. 0.4.3
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Reference-guided Assembly         :: missing
            Genome Coverage                   :: 33x
            Sequencing Technology             :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003325255.1-RS_2024_05_14
            Annotation Date                   :: 05/14/2024 01:36:11
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,630
            CDSs (total)                      :: 4,510
            Genes (coding)                    :: 4,386
            CDSs (with protein)               :: 4,386
            Genes (RNA)                       :: 120
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 124
            CDSs (without protein)            :: 124
            Pseudo Genes (ambiguous residues) :: 0 of 124
            Pseudo Genes (frameshifted)       :: 60 of 124
            Pseudo Genes (incomplete)         :: 92 of 124
            Pseudo Genes (internal stop)      :: 32 of 124
            Pseudo Genes (multiple problems)  :: 47 of 124
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP030230.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2699
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="SA20041605"
                     /db_xref="taxon:28901"
                     /plasmid="pSA20041605.5"
     gene            complement(join(2357..2699,1..302))
                     /locus_tag="CHD05_RS24260"
                     /old_locus_tag="CHD05_24260"
     CDS             complement(join(2357..2699,1..302))
                     /locus_tag="CHD05_RS24260"
                     /old_locus_tag="CHD05_24260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017900990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolone resistance pentapeptide repeat protein
                     QnrB19"
                     /protein_id="WP_012954666.1"
                     /translation="MTLALVGEKIDRNRFTGEKVENSTFFNCDFSGADLSGTEFIGCQF
                     YDRESQKGCNFSRAMLKDAIFKSCDLSMADFRNVSALGIEIRHCRAQGADFRGASFMNM
                     ITTRTWFCSAYITNTNLSYANFSKVVLEKCELWENRWMGTQVLGATFSGSDLSGGEFST
                     FDWRAANFTHCDLTNSELGDLDIRGVDLQGVKLDSYQASLLMERLGIAVIG"
                     /name="quinolone resistance pentapeptide repeat protein
                     QnrB19"
     gene            complement(396..>551)
                     /locus_tag="CHD05_RS24265"
                     /old_locus_tag="CHD05_24265"
                     /pseudo=""
     CDS             complement(396..>551)
                     /locus_tag="CHD05_RS24265"
                     /old_locus_tag="CHD05_24265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309907.2"
                     /GO_function="GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /name="helix-turn-helix domain-containing protein"
     gene            1619..1855
                     /locus_tag="CHD05_RS24285"
                     /old_locus_tag="CHD05_24285"
     CDS             1619..1855
                     /locus_tag="CHD05_RS24285"
                     /old_locus_tag="CHD05_24285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001676031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_012772745.1"
                     /translation="MARLTNLTPAEKKFLDDAVAAAERASGKKLNQPNRHIVLNRARAQ
                     IELQRYADRQRALREDERQQSDFAWSRPRAPRR"
                     /name="hypothetical protein"
     ARG             complement(4..338)
                     /name="QnrB10"
                     /gene="QnrB10"
                     /gene_name="quinolone resistance protein (qnr)"
                     /tool="rgi"
                     /drug_class="fluoroquinolone antibiotic"
                     /identity="99.11"
                     /coverage="49.56"
     ARG             complement(2358..2698)
                     /name="QnrB19"
                     /gene="QnrB19"
                     /gene_name="quinolone resistance protein (qnr)"
                     /tool="rgi"
                     /drug_class="fluoroquinolone antibiotic"
                     /identity="100.0"
                     /coverage="52.8"
     Typing          1281..1454
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.5600000000000002e-86"
     Typing          complement(811..1302)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="92.308"
                     /coverage="81.0"
                     /evalue="0.0"
ORIGIN
        1 aagcttgcac cgcggaaatc tgcgccttgt gcgcggcagt ggcgaatttc aatgcccaag
       61 gcactgacgt tgcggaaatc tgccattgat aaatcacagc ttttgaaaat ggcatctttc
      121 agcattgcgc gactaaaatt gcaccctttc tgactttcgc gatcatagaa ctggcagccg
      181 ataaattcag tgccgctcag gtcggcacct gaaaaatcgc agttaaaaaa tgtactattt
      241 tcaactttct caccggtgaa gcgatttctg tcaatttttt cgccaactaa tgccagagtc
      301 atatctatgc ctgtgttttt atacagtaat gacgccatgg taaaccttat gacgttatgc
      361 gtcaaacccg ccagtatgac acctgcaaat gcgtattaga tctggtgttt cttcagcaag
      421 gcacgtagct gatgataagt cagacccagt aattcagcgg cttttttctg gttaaattta
      481 gcctgctgta agctggtttg tagaaagtct ttctcttgct gctgctggaa ttcacgcaga
      541 tccagcgtta taacgatgtg tatcctatgt gctcggattg gatagatttc cattacggtg
      601 aaggatcttc ttgagatcct ttctgtggcg tcgtaatctc ttgctctgta aacgaaaaaa
      661 ccgccctgca aggcggtttt tcgaaggttc tcagagcagc aactctttga accgtggtaa
      721 ctggcttacg aggagcgcag taaccaaatc tgttctttca gtttagcctt aacaggcgca
      781 taacttcaag actaactcct ctaaatcagt taccagtggc tgctgccagt ggcgataagt
      841 cgtgtctttc cgggttggac tcaagatgat agttaccgga taaggcgcag cagtcggact
      901 gaacgggggg ttcgtgcata cagtccatcc aggagcgaac tgccttcgcg gaactgagtg
      961 tcaggcgtgg aatgagataa acgcggccat aacagcggaa tgacaccggt aaaccgaaag
     1021 gcaggaatgc gggggagcac gagggagcca ccagggggaa acgcctggta tctttaagcc
     1081 gcatcgggtt tcgccaccac tgatttgagc gtcagatttc atgatgtttg tcaggggggc
     1141 ggagcctatg gaaaaacggc ttcgccgcgg ccttatctct tccctgttaa gctccttcct
     1201 ggtatctccc aggaaatttc cgcctcgcct gtaagccggc accgctcgcc gcagccgaac
     1261 gaccgagcgc agcgagtcag tgagcgagga agcggaatat atcctgtact acatatcctg
     1321 ctgacgcgct ggtgccgcct tttttctcct gctacatgaa gcacttcact gatttccaca
     1381 tccgtgccaa catagtcagc cagtatacac tccgctagcg ctacgtgact ggttcagggc
     1441 tgcgccccga aaccggctaa aagctaatga cgcgcctgcg gcttgtccaa cgcctcacgg
     1501 caccggatta aaatccgctc ccgttcaccg tttctgactg cctttcaccg tcgctggcgc
     1561 ttcatcgttt ctactgtgtc tggcagactg tgctgattta ttctgactgg agaacgttat
     1621 ggccagactg acaaacttga cgcctgcaga gaaaaaattt cttgatgatg ctgttgccgc
     1681 agctgaaaga gcgtcaggta aaaagctaaa tcagcctaac cggcacatcg tcctgaacag
     1741 agcgcgtgcg caaattgagt tgcagcgtta cgccgaccgc cagcgtgcat tacgtgagga
     1801 tgagcggcag cagtccgatt ttgcctggtc acgtccgcgc gcgccgcgcc gctgattttg
     1861 gcttttggcg gtttagtggt gctgacgctg cgaaatcacc tgccattcac ctgcgtgcat
     1921 agccatgcag tcgcgcagaa atcatcaggg gcgtttttcc gggatactgg tgaggaaagg
     1981 tgctggaaac ggccctgatg cagcaggatt gcgctgaggg cgcctgcggg ggtgcgggca
     2041 agggatgtta tgtttaatcg gtctgaccgt caggtacaaa aaaaagccct tagggggctt
     2101 tttttttgct atgagttagc catattttcg ttaagacatg gcttcatgat tcgggagtgg
     2161 ttattcgttg ttctcgcgaa aatgaattgg ttagatattc atcaaattcc tgtccagaat
     2221 gcagcattag atggcatgtc gttgatgcgg taggtcagga tattcgtcca ctggagaaaa
     2281 cgtttcacaa tgcttgccag gagtcgtact ggttaaaagt aaatcgtcaa acgcatctcc
     2341 cggtgtaaac gctgaactaa ccaatcacag cgatgccaag ccgctccatg agcaacgatg
     2401 cctggtagct gtctaactta acgccttgta aatcaacacc ccgaatatct aagtcaccta
     2461 actccgaatt ggtcagatcg caatgtgtga agtttgctgc tcgccagtcg aaagtcgaaa
     2521 actcgccgcc ggagagatct gaaccactga acgtcgcacc cagtacctga gtccccatcc
     2581 agcggttttc ccacagctca cacttttcca acacgacttt cgaaaaattg gcgtagctta
     2641 gattagtatt agtgatatat gcgctgcaaa accaggtgcg cgtggtgatc atattcata
//
