LOCUS       NZ_CP030229             3028 bp    DNA     circular CON 14-MAY-2024
DEFINITION  Salmonella enterica strain SA20041605 plasmid pSA20041605.4,
            complete sequence.
ACCESSION   NZ_CP030229
VERSION     NZ_CP030229.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06045058
            Assembly: GCF_003325255.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3028)
  AUTHORS   Nash,J.H.E., Robertson,J. and Bessonov,K.
  TITLE     Completed Genome Sequences of 32 Strains from Various Serotypes of
            Salmonella enterica
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3028)
  AUTHORS   Nash,J.H.E., Robertson,J. and Bessonov,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-JUN-2018) Public Health Agency of Canada, National
            Microbiology Laboratory at Guelph, 110 Stone Road West, Guelph,
            Ontario N1G3W4, Canada
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: MAY-2018
            Assembly Method                   :: unicycler v. 0.4.3
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Reference-guided Assembly         :: missing
            Genome Coverage                   :: 33x
            Sequencing Technology             :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003325255.1-RS_2024_05_14
            Annotation Date                   :: 05/14/2024 01:36:11
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,630
            CDSs (total)                      :: 4,510
            Genes (coding)                    :: 4,386
            CDSs (with protein)               :: 4,386
            Genes (RNA)                       :: 120
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 124
            CDSs (without protein)            :: 124
            Pseudo Genes (ambiguous residues) :: 0 of 124
            Pseudo Genes (frameshifted)       :: 60 of 124
            Pseudo Genes (incomplete)         :: 92 of 124
            Pseudo Genes (internal stop)      :: 32 of 124
            Pseudo Genes (multiple problems)  :: 47 of 124
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP030229.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3028
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="SA20041605"
                     /db_xref="taxon:28901"
                     /plasmid="pSA20041605.4"
     gene            join(2828..3028,1..>3)
                     /locus_tag="CHD05_RS24230"
                     /old_locus_tag="CHD05_24230"
                     /pseudo=""
     CDS             join(2828..3028,1..>3)
                     /locus_tag="CHD05_RS24230"
                     /old_locus_tag="CHD05_24230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461630.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA];
                     GO:0000150 - DNA strand exchange activity [Evidence IEA]"
                     /GO_process="GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /name="recombinase family protein"
     gene            218..625
                     /locus_tag="CHD05_RS24240"
                     /old_locus_tag="CHD05_24240"
     CDS             218..625
                     /locus_tag="CHD05_RS24240"
                     /old_locus_tag="CHD05_24240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="WP_114043318.1"
                     /translation="MSDYYYSFKEKGFFYKPDTESGDCPTDLIPLTDEHYHELMQGQVD
                     GKYIEHRKGGPVLVEHREYTHEELVAQAEARKAELLAEAESVIAPLARAVKLKIATDEE
                     IKRLDAWELYSVMVNRVDTSKPDWPDVPAIQ"
                     /name="tail fiber assembly protein"
     gene            1026..>1165
                     /locus_tag="CHD05_RS24885"
                     /pseudo=""
     CDS             1026..>1165
                     /locus_tag="CHD05_RS24885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460062.1"
                     /note="frameshifted; incomplete; partial in the middle of a
                     contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /name="hypothetical protein"
     gene            complement(1216..1836)
                     /locus_tag="CHD05_RS24250"
                     /old_locus_tag="CHD05_24250"
     CDS             complement(1216..1836)
                     /locus_tag="CHD05_RS24250"
                     /old_locus_tag="CHD05_24250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461633.1"
                     /GO_process="GO:0098004 - virus tail fiber assembly
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="WP_114043320.1"
                     /translation="MVYRTRGNGIMKKYQDIKNFRLIDAPVNRGKTQSEINIGAYFLES
                     EDGLDWYECQSLFSDDTAKIMYDHEGVIWGVVNKPVPQRGNTYAVSMLWPVNMSVAEIA
                     AADCPDDCRGDGSWLYRDGKVLPVPVDYQAKAETTRQKLLNDADNAIKDWRTELTLGII
                     SDENKAALILWINYINVLKTLDLTDISDEATFTAIRWPSLPQE"
                     /name="tail fiber assembly protein"
     gene            complement(1806..>2255)
                     /locus_tag="CHD05_RS24890"
                     /pseudo=""
     CDS             complement(1806..>2255)
                     /locus_tag="CHD05_RS24890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461634.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /name="phage tail protein"
ORIGIN
        1 cagctcaaac ggaacctaca atttcccgcg agagtttctg gcatcctgct ttgctgtatt
       61 tgtcaccaac actaatcagc agggaggttc agtggataat gcgtttggat acccggtgag
      121 taaaagtcag ttttttgccg cgactaaagc atcaacagac ggaaatgtcg taaatggcta
      181 tcctgtagcc tggtttgcgc tcgggagata agtatcaatg agcgattatt attacagctt
      241 taaagagaaa ggttttttct acaagccgga taccgaatcg ggagattgcc cgactgatct
      301 aattcctctg actgatgaac attatcatga acttatgcag ggtcaggtgg acggaaaata
      361 tattgagcac aggaaaggag gcccggtatt ggttgagcat cgcgaatata cacatgaaga
      421 gttggttgca caggctgaag ccagaaaagc ggaacttctt gctgaggcag agtcagttat
      481 tgcaccactg gcacgggcag taaaactaaa aattgccaca gatgaagaga ttaaacggct
      541 ggacgcctgg gaactctaca gcgtaatggt aaaccgggtg gacacatcaa aacctgactg
      601 gcctgatgtg cctgcaatcc agtaatatga cgttgtgaaa agacaggctg acgttaataa
      661 aatacgtcag cctgaagtaa tattcagttc agtaagaact gatgaaactt aatgaccaga
      721 tataccatca gtcctgatat ggttgttata gttttctgta aaaaattaac aaccacaaat
      781 ctgacaccac tccagtggtt tctctatatc ttgtggccat ttgtcacacc atggtgggcg
      841 aatatatggg gcaggcattg gcggccagcc actggaagag tgttttgtat tatctggtgg
      901 gggttttgaa tcactggcag ccatcgccga tgccgaaaag gctgtagccg acaacaccag
      961 aagcaatggg aaaaatatac gatgtctcat aatgtcaccc gtgaatattc agattatcca
     1021 tactgttgac ttccttcatt tccagcatag ttcacgctgt atcatcattg aataaacaat
     1081 taagtttatt gagcgaaaat ttacttaaag aaaaaataat aagcattaat atttttgcaa
     1141 tatttcaact catgccagaa taaatgtgtg tagatgacct aaaaatgatt agcaggaata
     1201 tcgataacca gtaaatcact cctgtggtaa tgaaggccac ctgattgctg tgaaggtggc
     1261 ctcatctgaa atgtctgtta aatccagcgt tttaagaaca ttgatataat taatccacag
     1321 aattaaagcc gctttatttt catcactgat aatccccagc gttaattctg tgcgccagtc
     1381 cttaatggca ttgtctgcat cgttaagtaa tttctgtcgg gtggtttcgg ccttagcctg
     1441 ataatccacc ggaacgggta aaactttgcc atctctgtac aaccatgagc catcaccacg
     1501 acagtcgtca ggacagtcag cagcggctat ttccgcaaca gacatattaa ccggccacag
     1561 cattgataca gcatatgtgt ttcctcgttg cgggactggc ttattaacaa caccccagat
     1621 aaccccctca tggtcgtaca tgatttttgc ggtatcatcc gaaaataatg actgacattc
     1681 ataccagtcc aggccgtctt ctgactccag aaaatatgcg cctatattta tttcggactg
     1741 cgttttaccc ctgtttacgg gcgcgtcaat aagtctgaaa tttttaatat cctgatattt
     1801 tttcattatg ccgttccccc ttgtacggta taccactgac tcccgactcg tttttgcaaa
     1861 ggcgcgtaag caataccatc aatgttttcg ccttgtgcat ctttccagac ggaagtgaca
     1921 acatatccgg gagtgttagg ccatgagcct gcattgttcc aggtagacac tgatgtgcca
     1981 gcccctaact gaacatctgc gacgaaattg ttattaatcc aaagactcag ccagctattt
     2041 ccccagacag aaccaaagat gtcgccgtta ctagtcatgc gcgatgagcc atttcctgcc
     2101 tgtacttcgc ctgtggctac agagtttccg tttactttca gggaaaccat gctctccaca
     2161 agattaccga tgaaacggaa tacatgtgtg tagttcgagt aaacatcaag caccccgtcg
     2221 ccgttctgtt taaaaccagt gtcattgtca ccaagaacga tcgaattgcc gcccagcgca
     2281 ttatcagtac caatgcttag cggaccgtta agctgccccc cggtaatcgg caatgcaccc
     2341 acatcactgg ctgaaggttt atttgcggtg ttgtagtcaa taacccacgg gcgactggta
     2401 ttcggtacag ttccccagtc ctggcgcttt gcgttcgcgc ccatatgcgc gtaatagtgc
     2461 tgaaaccaga cttccccgat tttctcaaca aacagatatc catagctgta cagcttactg
     2521 ccatccggat aggtgggaaa atcagcaact gagtctgagt tggacactga cacccgccac
     2581 catccaggtg tattagctga tgccatcgtg ccgttatcgg taatttctcc aacagcatcg
     2641 gcggaaatgg cccccacatc tgacgcccac aaagtgatat caccggtcag tggtttactg
     2701 ttaacccgcc gtgtcgccgg gacggcattt tttgccagat ttatcgtttc gcctaaaccg
     2761 aggtttatgg aaatgcagaa aacggtcgta aatggcatga tcccagcctt ttgcgagggg
     2821 gcctgttgtg caagttggct atgtgcgggt gtcaacaaat gaccagaaca ccgatttaca
     2881 gcgaaacgcg ctgaattgcg caggatgtga actgattttc gaagacaaaa taagcgggac
     2941 caaagcagaa agaccagggc taaaaaagtt actcaggacg ttatcagaag gggacacgct
     3001 ggttgtatgg aagctcgatc gtctgggt
//
