LOCUS       NZ_CP030228             3428 bp    DNA     circular CON 14-MAY-2024
DEFINITION  Salmonella enterica strain SA20041605 plasmid pSA20041605.3,
            complete sequence.
ACCESSION   NZ_CP030228
VERSION     NZ_CP030228.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06045058
            Assembly: GCF_003325255.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3428)
  AUTHORS   Nash,J.H.E., Robertson,J. and Bessonov,K.
  TITLE     Completed Genome Sequences of 32 Strains from Various Serotypes of
            Salmonella enterica
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3428)
  AUTHORS   Nash,J.H.E., Robertson,J. and Bessonov,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-JUN-2018) Public Health Agency of Canada, National
            Microbiology Laboratory at Guelph, 110 Stone Road West, Guelph,
            Ontario N1G3W4, Canada
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: MAY-2018
            Assembly Method                   :: unicycler v. 0.4.3
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Reference-guided Assembly         :: missing
            Genome Coverage                   :: 33x
            Sequencing Technology             :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003325255.1-RS_2024_05_14
            Annotation Date                   :: 05/14/2024 01:36:11
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,630
            CDSs (total)                      :: 4,510
            Genes (coding)                    :: 4,386
            CDSs (with protein)               :: 4,386
            Genes (RNA)                       :: 120
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 124
            CDSs (without protein)            :: 124
            Pseudo Genes (ambiguous residues) :: 0 of 124
            Pseudo Genes (frameshifted)       :: 60 of 124
            Pseudo Genes (incomplete)         :: 92 of 124
            Pseudo Genes (internal stop)      :: 32 of 124
            Pseudo Genes (multiple problems)  :: 47 of 124
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP030228.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3428
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="SA20041605"
                     /db_xref="taxon:28901"
                     /plasmid="pSA20041605.3"
     gene            82..345
                     /locus_tag="CHD05_RS24450"
     CDS             82..345
                     /locus_tag="CHD05_RS24450"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_138627904.1"
                     /translation="MPLEQAAFLFSGVGGMLLTEMEISNTRNITLIARRLAWINAKRTH
                     IDIPSFAELLFSGQKALFFEQYNYFHSRRYTTAGTSKPPDLP"
                     /name="hypothetical protein"
     gene            537..725
                     /locus_tag="CHD05_RS24210"
                     /old_locus_tag="CHD05_24210"
     CDS             537..725
                     /locus_tag="CHD05_RS24210"
                     /old_locus_tag="CHD05_24210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_024157493.1"
                     /translation="MNRQESAVLNIAKFIRAQTLLLLERIDLLDFDDEATDCEQLHEQA
                     EALYRKLSARLESDITA"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(<1290..1385)
                     /locus_tag="CHD05_RS24880"
                     /old_locus_tag="CHD05_24220"
                     /pseudo=""
     CDS             complement(<1290..1385)
                     /locus_tag="CHD05_RS24880"
                     /old_locus_tag="CHD05_24220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid mobilization relaxosome protein MobC"
                     /name="plasmid mobilization relaxosome protein MobC"
     gene            2274..2971
                     /locus_tag="CHD05_RS24225"
                     /old_locus_tag="CHD05_24225"
     CDS             join(2274..2523,2523..2971)
                     /locus_tag="CHD05_RS24225"
                     /old_locus_tag="CHD05_24225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558153.1"
                     /ribosomal_slippage=""
                     /GO_function="GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
                     /protein_id="WP_094106546.1"
                     /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTY
                     TASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHFKKLRPQSVTSRIQPGSDVIV
                     CAEMDEQWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLERLLSLLSAFEVVVW
                     MTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVI
                     GHYLNIKHYQ"
                     /name="IS1 family transposase"
     Typing          complement(1492..1576)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="91.954"
                     /coverage="100.0"
                     /evalue="1.43e-25"
ORIGIN
        1 attatctggt tagtgattcg cagcaacaaa gcgtcccggt tcaaaacgaa tcgtaagacg
       61 tagtttccct tgatgtaggg cttgccgctg gaacaggcgg cttttttatt ctccggcgtg
      121 ggggggatgc tgttgacaga aatggaaata agtaacaccc ggaatattac gcttattgcc
      181 cggcgtcttg cctggattaa tgccaaaaga actcatatcg atataccatc gtttgcagaa
      241 ctgcttttct ccggccaaaa agcgctgttc ttcgaacaat ataattattt tcactcacga
      301 cggtacacaa cggcaggcac gtcaaagcca ccggatttac cataacatcc gttgcccgca
      361 ccgcctcagg cgccctcagg gcgtttctga cggcggtacg gtaaaacagg taacaaacca
      421 cccgaaaagc cgccagaaac gtgccaggta aattttaacg ccatgcatga ctatgcacca
      481 gaatgacggc atcctgtttt cacatcaaaa tcatcacaag acacaggaaa acacacatga
      541 accgccagga atccgccgtt ctcaacatag ctaaatttat ccgcgcccag acactcctcc
      601 tgctggaaag aattgacctg ctcgacttcg atgacgaagc gacagactgc gaacagctgc
      661 atgagcaggc cgaagcgctt taccggaagc tcagcgcccg actggaatca gacataacgg
      721 cttagccttt ccgtcgcctg catcatggca tccacatcat cttttgagag atcttcatcc
      781 tccagtcgtc gctcaaggat gaacggacac ggaatttatt acgggtcgtg aggcactcag
      841 tatgaaagaa aaatgcagac aatacagact ggaactgtaa gcaagcagtg acgagattaa
      901 aaatcaggat aaccagagac ggtatttccg agactcagag aggtaatcaa tacggttaaa
      961 tgccccggga tataatgcac taacgacacg ccagaaatgt atctgggtca gctcatctgc
     1021 cccaccttcc ctgatgtcag aaagtacctc gtcgtaagtc tttccttcct cgcgggctac
     1081 aatcctcatc gtgtcccttg caaggcgatc agtacaccct ccgaaaatca gaacatcaat
     1141 aaacacgaag tcccttccgg taagaaaaaa aaccggcacg ggagccggta atactgtgaa
     1201 aaacagcccg ctttagcatc gcggttaata gtgacatgtt atgccattga gcagagatat
     1261 aagcacccac caaaactagg aggaacagac atagcagacg ggcgcaccca tgcagaaagc
     1321 tgtgtacccc cgcagcgttc cagcagtagc cggtactcat cctccgtcac ccacatggtg
     1381 agtatcttgt tccgtttctc ggacaaacca gtctcctgat aacgccgtga cgggcgggaa
     1441 accctttccc ggtcggcgcg gggttggaca agccgcaggc gcgtcaggct tttggcgggt
     1501 ttcggggcgc agccctgaac cagtcacata gcgctagcgg agtgtatact ggcttatcta
     1561 ttttaacact gtgcggaaat tgacagaaat cgggctatgt ggcagaggaa aatgcggctt
     1621 cgaagcataa gcagaatgat gggcggacgg tgaaaatgac gcctcctcgc tcattcgctc
     1681 actacgttcg gtcatgaagc tgtggcgggc gttgcggtga tctgactgag tgataatgat
     1741 ttttctggct ctagatgtac aaaagccccg tgacagaatc acagggcttg agtactctaa
     1801 ttcgtgcaga tacctgctcg gatcagaccg caatcaaatc ctagcagggc tggctaggaa
     1861 tgtcactacc agcttaatac cattcaacga cattaaaccc atatctgcac cttgactctc
     1921 aggtctacgc cccggactcc ggcaggataa acaggcaagc ggtgggaacc tgaccagctc
     1981 gggaaagaag ctggctctac ccggtctcac gttaaccaat aacgtacctg ataaagtgag
     2041 agtgaaggca gcggttgcgg tgaagcgtga ttgccaaggt ctggcgcaac acccacaaaa
     2101 tcgaagcagc atacgaacgg cctgatgctg gtcgcttcgc tccccgtttt ctggtgtacc
     2161 caccacgggg gcattaggct ttctttgccc taatatgggt ttgcgactct caaatccggg
     2221 taatgctgcc aacttactga tttagtgtat gatggtgatt ttaaggtgct tgcgtggctt
     2281 ccatttccat cagatgtcct tcctgctccg ctactgaagg cgtggtgcgt aacggcaaaa
     2341 gcactgccgg acatcagcgc tatctctgct ctcattgccg taaaacatgg caactacagt
     2401 tcacttacac cgcctctcag cccggtacgc accagaaaat cattgatatg gccatgaatg
     2461 gcgtcggatg tcgcgccagt gcacgcatta tgggcgttgg cctcaacacg gttttacgtc
     2521 acttaaaaaa ctcaggccgc agtcggtaac ctcgcgcata caaccgggca gtgatgtgat
     2581 tgtctgcgct gaaatggacg aacagtgggg ctacgtcggt gctaaatcac gtcagcgctg
     2641 gctgttttac gcgtatgaca ggatacggag gacggttgtg gcgcacgtct tcggtgaacg
     2701 cactctggcc acactggagc gtcttctgag cctgctgtcg gcctttgagg tcgtggtatg
     2761 gatgacggat ggctggccgc tgtatgaatc acgcctgaag ggaaagctgc acgttatcag
     2821 caagcgatat acgcagcgca ttgagcgaca taacctgaat ctgagacaac atctggcaag
     2881 gctgggacgg aagtcactgt cgttctcaaa atcggtggag ctgcatgaca aggtcatcgg
     2941 gcattatctg aacataaaac actatcagta agttggagtc attacccatc acgatgacta
     3001 aaaaacaagc aatttgagta aacaaatata cgcctgacat atttgtttac tcatgaaata
     3061 atatagccac aataataact ggtgtatttt ttttggctcc cggtgatgtc agggggccaa
     3121 ctttttgaaa attatcataa acatcagata aaacgaattg caaaggttaa aaaaataccg
     3181 ccagttataa taattgtgat atgaattaca gtgttatgaa acccatctct ggctaaatcg
     3241 ccgctctatt cccgttcccg ttcacctgta aagggcatgc aggtctctca atacgtggtg
     3301 taacacatat cgccttcacc gaaatgatgt gaagacttca tcattttagc aatcacaggt
     3361 tgccctaatc acttaacgtt attattgttc tattgaagcc ttaacctaaa cccactcaca
     3421 aaacgtgg
//
