LOCUS       NZ_CP030227             4096 bp    DNA     circular CON 14-MAY-2024
DEFINITION  Salmonella enterica strain SA20041605 plasmid pSA20041605.2,
            complete sequence.
ACCESSION   NZ_CP030227
VERSION     NZ_CP030227.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06045058
            Assembly: GCF_003325255.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4096)
  AUTHORS   Nash,J.H.E., Robertson,J. and Bessonov,K.
  TITLE     Completed Genome Sequences of 32 Strains from Various Serotypes of
            Salmonella enterica
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4096)
  AUTHORS   Nash,J.H.E., Robertson,J. and Bessonov,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-JUN-2018) Public Health Agency of Canada, National
            Microbiology Laboratory at Guelph, 110 Stone Road West, Guelph,
            Ontario N1G3W4, Canada
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: MAY-2018
            Assembly Method                   :: unicycler v. 0.4.3
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Reference-guided Assembly         :: missing
            Genome Coverage                   :: 33x
            Sequencing Technology             :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003325255.1-RS_2024_05_14
            Annotation Date                   :: 05/14/2024 01:36:11
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,630
            CDSs (total)                      :: 4,510
            Genes (coding)                    :: 4,386
            CDSs (with protein)               :: 4,386
            Genes (RNA)                       :: 120
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 124
            CDSs (without protein)            :: 124
            Pseudo Genes (ambiguous residues) :: 0 of 124
            Pseudo Genes (frameshifted)       :: 60 of 124
            Pseudo Genes (incomplete)         :: 92 of 124
            Pseudo Genes (internal stop)      :: 32 of 124
            Pseudo Genes (multiple problems)  :: 47 of 124
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP030227.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4096
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="SA20041605"
                     /db_xref="taxon:28901"
                     /plasmid="pSA20041605.2"
     gene            complement(140..298)
                     /locus_tag="CHD05_RS24990"
                     /old_locus_tag="CHD05_24175"
     CDS             complement(140..298)
                     /locus_tag="CHD05_RS24990"
                     /old_locus_tag="CHD05_24175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007772075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_032670878.1"
                     /translation="MHEPPVQSDCCALSGNYRLESNPERHEKSLLAAAISNWRYTRDKL
                     RGLEVWA"
                     /name="hypothetical protein"
     gene            937..1260
                     /locus_tag="CHD05_RS24185"
                     /old_locus_tag="CHD05_24185"
     CDS             937..1260
                     /locus_tag="CHD05_RS24185"
                     /old_locus_tag="CHD05_24185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_001555769.1"
                     /translation="MLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPARAGKLPSI
                     SPALLRQLAGMGNNLNQIARQVNAGGSSGLDRVQVVAALMAIDAGLERLRHAVLEKGAD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            1469..>1903
                     /locus_tag="CHD05_RS24875"
                     /pseudo=""
     CDS             1469..>1903
                     /locus_tag="CHD05_RS24875"
                     /inference="COORDINATES: protein motif:HMM:NF015397.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            1938..2423
                     /locus_tag="CHD05_RS24435"
     CDS             1938..2423
                     /locus_tag="CHD05_RS24435"
                     /inference="COORDINATES: protein motif:HMM:NF016710.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_012782630.1"
                     /translation="MNSLLTLAKDLEQKSKVQQQTTGEMLKAAFSEHEKSVRAELNESE
                     KRISAAIHDHDRMLSSAMSQRTKGMLRMVSQTWLTIVLVSVLLIASSAGILWWQGQQIL
                     DNYTTIREQKSTQAMLSERNSGVQLTTCGEERRRCVRVNPDAGRFGEDSSWMILAGK"
                     /name="MbeB family mobilization protein"
     gene            2427..2636
                     /locus_tag="CHD05_RS24440"
     CDS             2427..2636
                     /locus_tag="CHD05_RS24440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014538403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_001632067.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWESAFAEWRTMCGLMQRENA
                     ALSERVTDLSTQVLSLSEQLRRLS"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(3166..3393)
                     /locus_tag="CHD05_RS24195"
                     /old_locus_tag="CHD05_24195"
     CDS             complement(3166..3393)
                     /locus_tag="CHD05_RS24195"
                     /old_locus_tag="CHD05_24195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010615788.1"
                     /GO_component="GO:0005886 - plasma membrane [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgdI/YgdR family lipoprotein"
                     /protein_id="WP_000719360.1"
                     /translation="MKKIFVSVFAAAVALSALTGCTRTSYAIHTNDGRTIVSDGKPTES
                     DSGLLGYKDANGVKQQINKADVKEVSEIPH"
                     /name="YgdI/YgdR family lipoprotein"
     gene            complement(3415..3648)
                     /locus_tag="CHD05_RS24200"
                     /old_locus_tag="CHD05_24200"
     CDS             complement(3415..3648)
                     /locus_tag="CHD05_RS24200"
                     /old_locus_tag="CHD05_24200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008461706.1"
                     /GO_component="GO:0005886 - plasma membrane [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgdI/YgdR family lipoprotein"
                     /protein_id="WP_001036746.1"
                     /translation="MNKKTLLAAMMVALVTFAAAGCSSNQEIKTTDDRTIVTDGKPKVD
                     SDTGLVSYKDAHTGRTEQINRDKITNMSELDN"
                     /name="YgdI/YgdR family lipoprotein"
     gene            3730..3999
                     /locus_tag="CHD05_RS24445"
     CDS             3730..3999
                     /locus_tag="CHD05_RS24445"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_079839079.1"
                     /translation="MNGQEFRLLLTEHGEKEAVLLFGKKSFVAVPDTQNLYGGCYYLYL
                     EDAHKNELLIELNESDLYPGGAIELQHNGGRKIHCEILKVRWSR"
                     /name="hypothetical protein"
     Typing          751..829
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="5.8899999999999995e-34"
     Typing          complement(187..675)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="86.747"
                     /coverage="94.0"
                     /evalue="7.82e-151"
     Typing          1251..2746
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="98.998"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 aatctcttgc tctgaaaacg aaaaaaccac ctggggaggt ggtttgatcg aaggttaagt
       61 cagttgggga actgcttaac caggtaactg ggtatacgag accgcagaaa ccaaaactgt
      121 tctttcagtg tagcctctct caggcccata cttcaagacc tcttaatttg tctctcgtat
      181 acctccagtt actaatggct gctgccagta gcgatttttc gtgtctttcc gggttggact
      241 caagacgata gttaccggat aaggcgcagc agtcggactg aacggggggt tcgtgcatac
      301 agtcaatcct ggagcgaact gccttcgcgg aactgagtgt caggcgtgga atgagaaacc
      361 gcggccataa cagcggaatg acaccggtaa accgaaaggc aggaatgcgg gggagcacga
      421 gggagccatc agggggaaac gcctggtatc tttaagccgc atcgggtttc gccaccactg
      481 atttgagcgt cagattctgt gatgcttgtc aggggggcgg agcctatgga aaaccggcag
      541 cggcgcatcc tttcttcccc tcctgcattc acgtatttcc ccgccacgtc tttatccgtg
      601 agtccgtacc gctcgccgca gccgaacgac cgagcgtagc gagtcagtga gcgaggaagc
      661 ggaatatcca ccgggacagg catcagcctc ttacgcacct gagcctcatc tcacagtttt
      721 catgactgac tatttcatcc cgattcccgt cgtgccacca tagtaagcca gtatacactc
      781 cgctagcgct acgtgactgg ttcagggctg cgccccgaaa cccgctaaat gccactgacg
      841 cgcctgcggc ttgcccaaca ccgcgccgac cgggaaaaga tttcccgccc gtcccggcgt
      901 tatcaggagg ccggattggc agacaaacgc agcaaaatgc tcacgatgtg ggtaacagaa
      961 gatgagcacc gccgtctgct ggaacgctgc gacggtaaac agctcgcggc ctggatgcgg
     1021 cagacgtgcc tggacgagaa gcccgcccgg gccggcaaac ttccctcgat ctcgccggcg
     1081 ctgcttcgtc agcttgccgg catggggaac aacctcaacc agattgcccg ccaggttaac
     1141 gccggtggca gtagcggtct cgaccgcgtg caggtcgtcg ccgcgctgat ggccatcgat
     1201 gccggactcg agcggctgcg gcatgccgta ctggaaaagg gggctgacga tgatcgttaa
     1261 gtttcatccc cggggacgcg gaggcggtgc cggcccggtt gattatctgc tggggaaaga
     1321 ccgccagcgc gacggtgcca gcgttcttca ggggaagccg gaggaagtcc gggagcttat
     1381 cgacgcctcg ccctacgcca aaaagtacac ctccggggtg ctgtcctttg ccgaacagga
     1441 cttaccgccc gggcagcgtg aaacgctgat ggcgagcttc gagcgggttc tgatgcccgg
     1501 actcgataaa gaccagtaca gcgtgctgtg ggttgagcac cgggacaagg ggcggctgga
     1561 gctgaacttc ctgatcccga acacggagct gctgaccggc aaacggctcc agccatacta
     1621 tgaccgcgcc gaccgtcctc gcattgatgc ctggcagacc atcgtgaacg gcagtctggg
     1681 gctgcacgac ccgaacgcgc cggaaaaccg gcgggcactg gtcacgccgt ccgcgctgcc
     1741 ggaaacgaag caggaagccg ctcaggcgat tacgcggggt ttactggcct tagcctcgtc
     1801 cggggagctg aaaacgcgtc aggacgtcac tgaggcgctg gaaagcgcag gttttgaggt
     1861 ggttcgcacc acaaaaagca gcatcagcat tgccgacccg gacggggggc gaaacatccg
     1921 actgaaggga gccatctatg aacagtcttt taacgctggc gaaggactta gagcagaaat
     1981 cgaaagtgca gcagcagact accggcgaga tgctgaaagc cgcattcagc gagcacgaga
     2041 agtctgtcag agcggaactg aacgaaagcg agaagagaat cagcgccgcc atccacgacc
     2101 acgaccggat gctgtcctca gccatgagcc agcgtacgaa agggatgctg cgcatggtca
     2161 gccagacgtg gctgaccatc gtcctggtct ccgtgctgct gatagcctca agtgcgggca
     2221 ttctatggtg gcaggggcag cagatactcg acaattacac gaccatccgg gagcagaaga
     2281 gcacgcaggc catgctgtcc gagaggaaca gcggcgtgca gctcacgacc tgcggagagg
     2341 aacgacgccg ctgcgtgagg gtgaacccgg acgcgggacg gttcggagag gattcgagct
     2401 ggatgatact ggcggggaaa tagcacatga cggaactgga aaaacagttg ctgagcgcat
     2461 tagagcagct acagcaggac tactcgaaaa ggctggacga gtgggagagc gccttcgcgg
     2521 aatggcggac gatgtgtggt cttatgcaac gggagaacgc agcgctgagc gagcgcgtca
     2581 cggacttgag cacgcaggtg ctgagtttaa gcgagcagct gcgccggttg tcgtaaggct
     2641 gaacgacatc gaggcacacc gggagcagga gcgcgcagcg cagcaccaga aagcgctgga
     2701 gctggaacga tcgcagcgtc agcaggagta tgacggtccg tcgctgtgat aaccggataa
     2761 aacggggctt tcattgagga tctgcgccga aacccggtgc cattcacccg gctgcatggc
     2821 tatgcagtcg ggtgagattt atcaggcgca gaatgcacgg tttgcggggt ggtttactgt
     2881 cggttttgca ggactgacgc cgcattcgcg ctgaacccgt ccggagaggt gcgggcaagg
     2941 gatgttatgg taaaagcatg atgcctggcg ggtacggaaa aattgtggcg accgagcctg
     3001 cagacgcaaa aatccggccc atacttattc gtctccttca tcaggaatgc agtactatcc
     3061 agccactgca ggtatttggc ccccagcggg ggcttttttt gcctgttgtt ggggcagata
     3121 aagaaaaggg ccgcattagc ggcccttttc ggagagagcg atgcctcaat gcggaatttc
     3181 agagacttct ttaacgtcgg ctttattgat ctgctgtttg acaccatttg cgtctttata
     3241 gcccagcagg cctgagtctg attctgtagg cttgccgtcg ctgacaattg tacgcccgtc
     3301 gttggtgtgg atggcatagc ttgtgcgcgt gcagccggtt agggctgaaa gcgcaactgc
     3361 cgctgcgaac actgaaacaa aaatcttttt caaagccagc tccttttatc cgtatcagtt
     3421 gtctagttca ctcatgttgg taattttgtc acggttgatc tgttcggttc ggcctgtatg
     3481 ggcatctttg taggatacta atcccgtatc actgtcaact ttgggtttgc cgtctgtaac
     3541 gatagtgcga tcatctgtgg tttttatttc ttggtttgaa gaacatccag cagcggcaaa
     3601 ggtcaccaac gcgaccatca tggccgccaa cagcgttttt ttattcataa taggttccct
     3661 gcttaaaggt aaagtggata tggtcactaa ccatctaagt ataggtcgtt ttttcatgcg
     3721 aaaagaggat tgaatggaca agaatttcga ttattgctga cagagcatgg agaaaaagag
     3781 gctgttttac tgttcggaaa gaaatctttt gttgccgtgc cagatacgca gaacctttat
     3841 ggtgggtgtt attaccttta tttagaggat gctcacaaga acgagctttt aattgagtta
     3901 aacgaaagtg atttataccc cggtggcgca atagaacttc aacacaacgg cggtcggaag
     3961 attcattgcg agatactaaa agtaaggtgg agtcgttaac tcaagtaatg tttcctaagt
     4021 atgttgatag gcaaacatag tggtagttag tctctctgag taaatgatct tcttgtgatc
     4081 ctgtcgttac agtcgt
//
