LOCUS       NZ_CP030226             5410 bp    DNA     circular CON 14-MAY-2024
DEFINITION  Salmonella enterica strain SA20041605 plasmid pSA20041605.1,
            complete sequence.
ACCESSION   NZ_CP030226
VERSION     NZ_CP030226.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06045058
            Assembly: GCF_003325255.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 5410)
  AUTHORS   Nash,J.H.E., Robertson,J. and Bessonov,K.
  TITLE     Completed Genome Sequences of 32 Strains from Various Serotypes of
            Salmonella enterica
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5410)
  AUTHORS   Nash,J.H.E., Robertson,J. and Bessonov,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-JUN-2018) Public Health Agency of Canada, National
            Microbiology Laboratory at Guelph, 110 Stone Road West, Guelph,
            Ontario N1G3W4, Canada
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: MAY-2018
            Assembly Method                   :: unicycler v. 0.4.3
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Reference-guided Assembly         :: missing
            Genome Coverage                   :: 33x
            Sequencing Technology             :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003325255.1-RS_2024_05_14
            Annotation Date                   :: 05/14/2024 01:36:11
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,630
            CDSs (total)                      :: 4,510
            Genes (coding)                    :: 4,386
            CDSs (with protein)               :: 4,386
            Genes (RNA)                       :: 120
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 124
            CDSs (without protein)            :: 124
            Pseudo Genes (ambiguous residues) :: 0 of 124
            Pseudo Genes (frameshifted)       :: 60 of 124
            Pseudo Genes (incomplete)         :: 92 of 124
            Pseudo Genes (internal stop)      :: 32 of 124
            Pseudo Genes (multiple problems)  :: 47 of 124
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP030226.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5410
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="SA20041605"
                     /db_xref="taxon:28901"
                     /plasmid="pSA20041605.1"
     gene            complement(101..394)
                     /locus_tag="CHD05_RS24140"
                     /old_locus_tag="CHD05_24140"
     CDS             complement(101..394)
                     /locus_tag="CHD05_RS24140"
                     /old_locus_tag="CHD05_24140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000609270.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HigA family addiction module antitoxin"
                     /protein_id="WP_000609279.1"
                     /translation="MINLYDPVHPGEFIREMFMEPFEIPAAELADKLEVSQSALSRLLN
                     GKTDLSYEMALRLSKVIGRSAESWVNMQAQYSLSKSRKTLSETLEHLHPMFP"
                     /name="HigA family addiction module antitoxin"
     gene            732..1013
                     /locus_tag="CHD05_RS24145"
                     /old_locus_tag="CHD05_24145"
     CDS             732..1013
                     /locus_tag="CHD05_RS24145"
                     /old_locus_tag="CHD05_24145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000594459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="WP_000594459.1"
                     /translation="MIKNIKHKGLRSFAENGNTAGIQPHLAKKLRMILTTLSTATCLQD
                     IVDVRALGCHPLKGERKGEFSVEVNGNWRVVFKVEEPNVLDVDLEDYH"
                     /name="type II toxin-antitoxin system RelE/ParE family
                     toxin"
     gene            2265..2588
                     /locus_tag="CHD05_RS24160"
                     /old_locus_tag="CHD05_24160"
     CDS             2265..2588
                     /locus_tag="CHD05_RS24160"
                     /old_locus_tag="CHD05_24160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_000957084.1"
                     /translation="MLTMWVTEDEHRRLLERCDGRQLAAWMRQICLDEKPARSGKLPSL
                     SPALLRQLAGMGNNLNQIARRVNAGGGTGHDRVQIVAALMAIDAGLERLRHAVLEKGTD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            2797..>3231
                     /locus_tag="CHD05_RS24870"
                     /pseudo=""
     CDS             2797..>3231
                     /locus_tag="CHD05_RS24870"
                     /inference="COORDINATES: protein motif:HMM:NF015397.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            3266..3757
                     /locus_tag="CHD05_RS24420"
     CDS             3266..3757
                     /locus_tag="CHD05_RS24420"
                     /inference="COORDINATES: protein motif:HMM:NF016710.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_162803342.1"
                     /translation="MSSLLTLAKDLEQQSKAQQQSTGEMLKAAFSEHEQSVRAELSASA
                     RRISDAILAHEQSMSEAMEKNRRSVLRTAGRTWLTILMVSALLIGTSGSILWWQGQQIT
                     DNYTHLRQQEDTLAKMTARTWGVRYQESSDGWRFLILPPGMQTEAIPYDGTTWIRLKQE
                     "
                     /name="MbeB family mobilization protein"
     gene            3764..3979
                     /locus_tag="CHD05_RS24425"
     CDS             3764..3979
                     /locus_tag="CHD05_RS24425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_029590204.1"
                     /translation="MTELEKQLLSALEQLQQDYSQRLDEWESAFAEWRSMCGLMQRENA
                     MLNERVSDLSTQVLSLSEQLRRLSGN"
                     /name="MbeD family mobilization/exclusion protein"
     Typing          1979..2152
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="98.286"
                     /coverage="100.0"
                     /evalue="2.58e-81"
     Typing          complement(1468..2055)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="91.709"
                     /coverage="97.0"
                     /evalue="0.0"
     Typing          2579..4071
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="96.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 acaacaatca tttcaagatc taagaactga actaaaaatc aaactaaagg taggtatgcg
       61 ggggttttac ggcaaaaagc ccgcacgagc gggcttttac ttatggaaac atcggatgaa
      121 ggtgttctag cgtctcggat aaagtcttac gacttttcga gaggctgtac tgagcctgca
      181 tattaaccca cgactctgca gagcggccta taactttaga tagtcgaaga gccatctcat
      241 aactaagatc agtttttcca ttgagcaatc tacttaatgc agattgtgat acttcaagct
      301 tatcagctaa ctctgcggca ggtatttcga acggttccat gaacatttcc ctgatgaatt
      361 caccggggtg tacaggatcg taaagattta tcatgccttc ctctattggt tttgtatttg
      421 attacacaaa acattttgtt tctttcgcgt tgcgcattgc acaatacgca agtgtctgtt
      481 attgacaaaa aaagcagtaa gctttaggat gctcggtgga gcagaaagct accgctgata
      541 tggtgtcttt accgactttt tcaaggcgcc atattgtacg gttagcgctc ttggaagtca
      601 aacgaggtaa tcgacctcag agacaaagtt acgtcaatta ttttaataat gcaaggggtt
      661 caaatggacg ctgtcaaatt gttttctgtt tatagagata gatatcgacg aaaattttat
      721 ggagatgatt gatgataaaa aacataaagc ataaagggct tcggagtttt gctgaaaacg
      781 gtaacaccgc cggaattcag cctcacttag cgaaaaaact tcgcatgata ttgactacgc
      841 taagcaccgc aacatgtctt caagatattg tggatgtaag ggcgctgggg tgtcaccccc
      901 taaaaggtga acgtaaaggt gagttttccg tagaggttaa cggaaactgg agggtggttt
      961 tcaaggtgga agaaccaaac gtcttagacg ttgatcttga agattaccat tagtaatcaa
     1021 taagtaagtt actaatccat cctagtggca atatggatgg attagggact ttattcaaaa
     1081 ataagtacct ctggaggatt tatgagagcc tttatgattt tgttgttccc tttgctttgt
     1141 gtagtcattg ctggggttct tgctgttcgt ggcctagatg ggtggggatg gttcctgttt
     1201 gcagctgttt tgtgtactgg tgttgatacg gtgcagaaac atgtctctaa caagaataat
     1261 tctgtaagcg attgaggctt tcagggttct tccttgactg attaaatcga caaagcgtat
     1321 cttatgttcg aaacgaaaaa accgcctggg gaggcggttt tttcgagggt tcagtaagtt
     1381 ggggaacttc tgaaccgtgg taacagggtg tacaagaccg ctgaaaccaa attctgtcct
     1441 tccagtttag cctcagtatg gctctgactt caagaactct gcatcagtaa tctcttgtac
     1501 accctcttac caatggccgc agccagtggc gttttgttgt gtctttccgg gttggactca
     1561 agtcgatagt taccggataa gacgctgcgg tcggactgaa cggggggttc gtgcatacag
     1621 tccagcttgg agcgaactgc cttcccggaa ctgagtgtca ggcgtggaat gagataaacg
     1681 cggccataac agcggagtga caccggtaaa ccgaaaggca ggaacaggag agcgcacgag
     1741 ggagccacca gggggaaacg cctggtatct ttatagtcct gtcgggtttc gccaccactg
     1801 atttgagcgt cagatttcgt gatgcttgtc aggggggcgg agcctatgga aaaacggctt
     1861 tgccgtggcc ttctcgcttc cctgttaagc ttcttcctgg catcctccag gaaatttccg
     1921 ccccgttcgt aagccatttc cgctcgccgc agccgaacga ccgagcgcag cgagtcagtg
     1981 agcgaggaag cggaatatat cctgtatcac atattctgct gacgcaccgg tgccgccttt
     2041 tttctcctgc cacatgaagc acttcactga caccctcatc cgtgccaaca tagtaagcca
     2101 gtatacactc cgctagcgct acgtgactgg ttcagggctg tgccccgaaa cccgccaaaa
     2161 gcctgacgcg cctgcggctt gtccaacccc gcgccgaccg ggaaaggctt tcccgcccgt
     2221 cccggcgtta tcaggaggcc ggtttgtcag agaaacggag caagatgctc accatgtggg
     2281 tgacggagga cgagcaccgg cggctgctcg agcgctgtga cggcaggcag ctggcggcgt
     2341 ggatgcggca gatctgcctg gacgaaaagc cggcacgttc cggaaagctc ccctcactct
     2401 cgccggcgct gctgcgccag cttgccggca tgggcaataa cctgaaccag atagcccgcc
     2461 gtgttaacgc cggcggcggc accggccatg acagggtaca gattgtggcg gcgctgatgg
     2521 ccatcgatgc cggccttgag cggctgcggc acgccgttct tgagaaagga acggacgatg
     2581 atcgttaaat ttcatccgcg cggccgcggc ggtggcgccg ggccggtgga ctatctgctg
     2641 ggtaaagacc ggcagcgtga aggcgccacc gtcctgcagg ggaagccgga agaagtccgg
     2701 gagctgattg acgcgtcgcc ttacgttaag aaatacacct ctggcgttct gtcgtttgcg
     2761 gaggccgatc tgcctcccgg ccagcgggaa aaactgatgg ccagcttcga gcgggttctg
     2821 atgcccggac tcgataaaga tcagtacagc attctgtggg tggagcacgc ggacaagggg
     2881 cgtctggagc tgaactttct gatccccaat accgagctgc tgaccggcag gcggctccag
     2941 ccttactacg accgcgccga ccggccgcgc atcgatgcct ggcagactat cgtgaacggc
     3001 agactggggc tgcacgaccc gaacgcgccg gaaaaccgcc gggcgctggt cacgccgtcc
     3061 gggctgccga aaacgaagca ggaggccgca gaagccatta cccggggact gctgaccctt
     3121 gcttcgtccg gggagctgaa aagccgtcag gatgtcactg acactcttga aggtgcaggt
     3181 tttgaggtgg tgcgcaccac gaaaagcagt atcagcattg ccgacccgga cggggggcga
     3241 aacatccgac tcaagggagc catctatgag cagtctttta acgctggcga aggacttaga
     3301 gcagcaatcg aaagcgcagc agcagagtac cggcgagatg ctgaaagccg cattcagcga
     3361 gcacgagcag tctgtcagag cggaactgag cgcaagcgcg aggagaatca gcgacgccat
     3421 cctcgcccac gagcagagta tgagcgaggc gatggagaaa aaccggcgga gcgtactgcg
     3481 gactgccggg cggacatggc tcaccatcct gatggtgtca gcgctgctga tcggcacgag
     3541 cgggagcatt ctgtggtggc aggggcagca gataaccgac aattacacgc atcttcgtca
     3601 gcaggaagat accctggcga aaatgaccgc ccggacgtgg ggagtgcgct atcaggagag
     3661 cagcgacggc tggaggtttc ttatcctgcc gccggggatg caaaccgaag ccatccccta
     3721 cgacgggacg acatggatcc gcctgaaaca ggagtagcgg aaaatgacag agctggaaaa
     3781 gcagttgctg agcgcattag agcagctaca gcaggactac tcgcaaaggc tggacgaatg
     3841 ggagagcgcc ttcgcggaat ggcggagcat gtgtgggctt atgcaacggg agaacgcgat
     3901 gctgaacgag cgcgtgtcgg acttgagcac gcaggtgctg agtttaagcg agcagctgcg
     3961 ccgcttgtcc gggaactgaa tgccatcgag ctccggcaga gggagaatga gtatcagaaa
     4021 acactggagc tggagcgcca gccgcagaaa acctaccgcg ggccgacact ttaaaccatc
     4081 caggctgctg acaacccgca cgaagagggg ctcttatttc tcccgctaaa taggttcgtg
     4141 atcaaaaagg tcacgactta ttcaggagcg ggaaatgaag ctgttaaatc ttattgaatc
     4201 attgcttaac tgcctgtatc tggcggcgga gctgtgggac tggctggaga agcatttgtc
     4261 ggtttttaag gcattggcgc ggattttagt gtgactttaa catccatgca tctggctgca
     4321 tgactatgca tccgtgtaat attcagcagc tgcgtttccg gtgttttttc gtcatgtctg
     4381 tcgccacttt ctcgcgtctg gcaccggaaa cgcagccaac cccgtttcag cggtgcgggc
     4441 aacggatgtt atggtaaata agagcgaccg tcccggtcgc tcttgaaaga gaattcggcc
     4501 ttaggtcagt tttcgcagat acaatcatgt ggactgcgga gacattcttc gcactcctca
     4561 catatgcact catccagttt ttcaccgcac tcgtcgcaac gtgagcagct acagtgctca
     4621 tctaaatttc cacaatcgct gcagcgctca cagacgcagt ctgccagctt ctcgttgcag
     4681 tcatcgcaga agccacaggt acaggcgctg gcagggaggg cacaaacatc gcaaatctta
     4741 tccattggat ccattttatc tcacttttat tttatcagtg gctgtgtgcg ggcgatttcc
     4801 ccagcgcgat agatgtggat ttaagtgcca tttttcaatg attaaggcag ctaaaaaagt
     4861 ggttttttag ggcttttcaa cgtgaccagc actgacgggg ataaatacag gtaagcaata
     4921 atgctcagtc atgaaaagga gaatccgatg gagcaacata cccctgaata cttacgacgt
     4981 accttagctc ataaccgtgc cctaatggac gatatcatta gcagtggcat gtccaggtac
     5041 tacaacacgg agattgtgga tgccgcatgt gaggcgatag aagctgaatt gcgacgacga
     5101 ggaattttgt aagagacaaa gcccgcttat gcgggctttg tcgttactgg cgcttctgtt
     5161 actcagtgtt gtctggggtt cggtagatct gtagccagta cctgccaggt gcgctcgttg
     5221 gtggtgcgaa ctcattatcg cgaatggtgc agtatcgtcc atatttgcgg gtaacagtat
     5281 gagtgtttgt gttgatgtca cattcttgga atgagccacc atcacgacct attttgccat
     5341 gtggtcctac ataaattgcc attttgttct cctttttaga gccttgtatg ggcatcttat
     5401 tggtgttcaa
//
