LOCUS       NZ_CP030193             2264 bp    DNA     circular CON 14-MAY-2024
DEFINITION  Salmonella enterica strain SA20104250 plasmid pSA20104250.3,
            complete sequence.
ACCESSION   NZ_CP030193
VERSION     NZ_CP030193.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06045239
            Assembly: GCF_003325075.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2264)
  AUTHORS   Nash,J.H.E., Robertson,J. and Bessonov,K.
  TITLE     Completed Genome Sequences of 32 Strains from Various Serotypes of
            Salmonella enterica
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2264)
  AUTHORS   Nash,J.H.E., Robertson,J. and Bessonov,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-JUN-2018) Public Health Agency of Canada, National
            Microbiology Laboratory at Guelph, 110 Stone Road West, Guelph,
            Ontario N1G3W4, Canada
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: MAY-2018
            Assembly Method                   :: unicycler v. 0.4.3
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Reference-guided Assembly         :: missing
            Genome Coverage                   :: 41x
            Sequencing Technology             :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003325075.1-RS_2024_05_14
            Annotation Date                   :: 05/14/2024 01:38:52
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,770
            CDSs (total)                      :: 4,651
            Genes (coding)                    :: 4,524
            CDSs (with protein)               :: 4,524
            Genes (RNA)                       :: 119
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 127
            CDSs (without protein)            :: 127
            Pseudo Genes (ambiguous residues) :: 0 of 127
            Pseudo Genes (frameshifted)       :: 67 of 127
            Pseudo Genes (incomplete)         :: 77 of 127
            Pseudo Genes (internal stop)      :: 39 of 127
            Pseudo Genes (multiple problems)  :: 48 of 127
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP030193.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2264
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="SA20104250"
                     /db_xref="taxon:28901"
                     /plasmid="pSA20104250.3"
     gene            complement(join(2053..2264,1..106))
                     /locus_tag="CHE86_RS25245"
                     /old_locus_tag="CHE86_25245"
     CDS             complement(join(2053..2264,1..106))
                     /locus_tag="CHE86_RS25245"
                     /old_locus_tag="CHE86_25245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000718045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000718044.1"
                     /translation="MKKIFILSAALIMAGCATKQYPQAANVTGPESSAMDCKAVALEIA
                     KTRSVQQEIEATGEFDGRTVLGFLGDFGIGNGMAKGEARKKAANRLNQLEALKAAKCAV
                     Q"
                     /name="hypothetical protein"
     gene            1299..1565
                     /locus_tag="CHE86_RS25260"
                     /old_locus_tag="CHE86_25260"
     CDS             1299..1565
                     /locus_tag="CHE86_RS25260"
                     /old_locus_tag="CHE86_25260"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_223173001.1"
                     /translation="MKRSQLTLIDGCFMFGFSPGELMNLCPDERLLFVRMISAMLRRSG
                     GDAGAVMFEAYRHIVSDTNQARRSYMLDLLESVRHDYVHGGYT"
                     /name="hypothetical protein"
     gene            complement(1613..1801)
                     /locus_tag="CHE86_RS25265"
                     /old_locus_tag="CHE86_25265"
     CDS             complement(1613..1801)
                     /locus_tag="CHE86_RS25265"
                     /old_locus_tag="CHE86_25265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_000165998.1"
                     /translation="MTKQESAALNMAKFIRAQSLLLLEKLDVLDLDDEAADCERMHEQA
                     EALYQKLSARFGIQDGE"
                     /name="Rop family plasmid primer RNA-binding protein"
     Typing          983..1155
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="91.954"
                     /coverage="100.0"
                     /evalue="2.04e-62"
     Typing          complement(513..1058)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.989"
                     /coverage="90.0"
                     /evalue="0.0"
ORIGIN
        1 ccattgcgga agattctgga ccggtgacgt tcgcggcctg tggatattgc tttgttgcgc
       61 atcctgccat gatcagcgct gccgatagga tgaatatttt tttcaaaatt atccttattt
      121 tatttaggca tagttaagag atacccattt tatcggcagg aaatgagggt tttttagttg
      181 aattttggga ggggcaaggt tccatattgg tcgaggattc tggagctgac cggcaacggc
      241 cagcgcggct atgggccatg cggtggttga gcatagaaag gatcttcttg agttcctttt
      301 tttctacgcg taatctcttg ctctgaaaac gaaaaaacca cctggggagg tggtttttcg
      361 aaggttaagt cagttgggga actgcttaac ctggtaactg gcttcagcag agcgcagata
      421 ccaaatactg tccttccagt gtagccgtag ttaggccacc acttcaagaa ctctatagca
      481 ccatctacat taactcgctc tgctaatcct gttaccagtg gctgctgcca gtggcgcttt
      541 gtcgtgtctt tccgggttgg actcaagacg atagttaccg gataaggcgc agcagtcgga
      601 ctgaacgggg ggttcgtgca tacagtccag cttggagcga actgccttcc cggaaccgag
      661 tgtcaggcgt ggaatgagaa accgcggcca taacagcgga atgacaccgg tacaccgaaa
      721 ggcaggaaca ggagagcgca cgagggagcc accaggggga aacgcctggt atctttatag
      781 tcctgtcggg tttcgccacc actgatttga gcgtcagatt tcgtgatgct tgtcaggggg
      841 gcggagccta tggaaaaacg gcttcgccgc ggccttatcg tttccctgtt aagtttcttc
      901 ctggcatctc ccaggaaatt tccgccccat tcgtaagccc gcaccgctcg ccgcagccga
      961 acgaccgagc gcagcgagtc agtgagcgag gaagcggaat atctcctgtc tcatatattc
     1021 cgcttacgct ctgctgctgc attttcctcc tgccacatga agcacttcac tgattcccgc
     1081 acccgtgcct acatagtaag ccagtataca ctccgctagc gctacgtgac tggttcaggg
     1141 ctgcgccccg acacccgcta aaagcactga cgcgcctgcg gcttgcccaa ccccgcgccg
     1201 tccgggaaag aatttcccga tcgacccgac gtttctgttt acctgtgatg ttaacgtttg
     1261 gatctttttc ccgggtttac ctattttaat gaagcgtaat gaagcgttca cagctgacgt
     1321 taatagatgg gtgcttcatg tttggttttt caccaggaga acttatgaac ctttgccccg
     1381 atgaacgtct gctctttgtg cggatgattt ccgctatgct tcgccgttcg ggcggtgatg
     1441 cgggtgctgt tatgtttgag gcgtatcgcc atattgtgtc cgataccaat caagctcgtc
     1501 gttcctacat gctcgacctg ctcgaaagcg tcaggcatga ctatgtacac ggtggatata
     1561 catagttgcc ctggatacgc ttttcgtcta agtgagcgtt cttttcgtct ctttattcgc
     1621 cgtcctgtat accgaagcgt gcgctcagct tctgataaag cgcttctgcc tgttcgtgca
     1681 ttcgctcaca gtcggctgcc tcgtcatcaa gatcgagcac gtcgagtttt tcgagcagca
     1741 gcagcgactg cgcccggata aattttgcca tgttcagtgc ggctgattcc tgttttgtca
     1801 tacggctttt tcccggtttt atggtgatcg cagactgaaa tcttacttca ttcacttgag
     1861 tgcatagcca tgcaggtacg cagaaatcat caggggcgtt ttttctcgat atgggcacag
     1921 aaaggtgtat gtttcaggcc ggagtcctca gaaacgccct gagggcgcct gaggcggtgc
     1981 gggcaacgga tgttatggta aatccagctg attggcaggt acaaaaaaag ccccgcaggg
     2041 cttttttgta ccttattgaa ctgcacactt tgcagccttc agggcttcca gctgatttag
     2101 ccggttagct gcttttttgc gggcttcgcc ttttgccatg ccatttccta tcccaaaatc
     2161 acccaggaaa cctaatacgg tgcgcccgtc aaattcgccg gttgcctcaa tttcttgttg
     2221 tacactgcgc gtttttgcga tttccagagc taccgctttg caat
//
