LOCUS       NZ_CP030192             4096 bp    DNA     circular CON 14-MAY-2024
DEFINITION  Salmonella enterica strain SA20104250 plasmid pSA20104250.2,
            complete sequence.
ACCESSION   NZ_CP030192
VERSION     NZ_CP030192.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06045239
            Assembly: GCF_003325075.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4096)
  AUTHORS   Nash,J.H.E., Robertson,J. and Bessonov,K.
  TITLE     Completed Genome Sequences of 32 Strains from Various Serotypes of
            Salmonella enterica
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4096)
  AUTHORS   Nash,J.H.E., Robertson,J. and Bessonov,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-JUN-2018) Public Health Agency of Canada, National
            Microbiology Laboratory at Guelph, 110 Stone Road West, Guelph,
            Ontario N1G3W4, Canada
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: MAY-2018
            Assembly Method                   :: unicycler v. 0.4.3
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Reference-guided Assembly         :: missing
            Genome Coverage                   :: 41x
            Sequencing Technology             :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003325075.1-RS_2024_05_14
            Annotation Date                   :: 05/14/2024 01:38:52
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,770
            CDSs (total)                      :: 4,651
            Genes (coding)                    :: 4,524
            CDSs (with protein)               :: 4,524
            Genes (RNA)                       :: 119
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 127
            CDSs (without protein)            :: 127
            Pseudo Genes (ambiguous residues) :: 0 of 127
            Pseudo Genes (frameshifted)       :: 67 of 127
            Pseudo Genes (incomplete)         :: 77 of 127
            Pseudo Genes (internal stop)      :: 39 of 127
            Pseudo Genes (multiple problems)  :: 48 of 127
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP030192.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4096
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="SA20104250"
                     /db_xref="taxon:28901"
                     /plasmid="pSA20104250.2"
     gene            596..754
                     /locus_tag="CHE86_RS26035"
                     /old_locus_tag="CHE86_25220"
     CDS             596..754
                     /locus_tag="CHE86_RS26035"
                     /old_locus_tag="CHE86_25220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007772075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_032670878.1"
                     /translation="MHEPPVQSDCCALSGNYRLESNPERHEKSLLAAAISNWRYTRDKL
                     RGLEVWA"
                     /name="hypothetical protein"
     gene            complement(991..1260)
                     /locus_tag="CHE86_RS25400"
     CDS             complement(991..1260)
                     /locus_tag="CHE86_RS25400"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_079839079.1"
                     /translation="MNGQEFRLLLTEHGEKEAVLLFGKKSFVAVPDTQNLYGGCYYLYL
                     EDAHKNELLIELNESDLYPGGAIELQHNGGRKIHCEILKVRWSR"
                     /name="hypothetical protein"
     gene            1342..1575
                     /locus_tag="CHE86_RS25225"
                     /old_locus_tag="CHE86_25225"
     CDS             1342..1575
                     /locus_tag="CHE86_RS25225"
                     /old_locus_tag="CHE86_25225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008461706.1"
                     /GO_component="GO:0005886 - plasma membrane [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgdI/YgdR family lipoprotein"
                     /protein_id="WP_001036746.1"
                     /translation="MNKKTLLAAMMVALVTFAAAGCSSNQEIKTTDDRTIVTDGKPKVD
                     SDTGLVSYKDAHTGRTEQINRDKITNMSELDN"
                     /name="YgdI/YgdR family lipoprotein"
     gene            1597..1824
                     /locus_tag="CHE86_RS25230"
                     /old_locus_tag="CHE86_25230"
     CDS             1597..1824
                     /locus_tag="CHE86_RS25230"
                     /old_locus_tag="CHE86_25230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010615788.1"
                     /GO_component="GO:0005886 - plasma membrane [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgdI/YgdR family lipoprotein"
                     /protein_id="WP_000719360.1"
                     /translation="MKKIFVSVFAAAVALSALTGCTRTSYAIHTNDGRTIVSDGKPTES
                     DSGLLGYKDANGVKQQINKADVKEVSEIPH"
                     /name="YgdI/YgdR family lipoprotein"
     gene            complement(2354..2563)
                     /locus_tag="CHE86_RS25405"
     CDS             complement(2354..2563)
                     /locus_tag="CHE86_RS25405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014538403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_001632067.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWESAFAEWRTMCGLMQRENA
                     ALSERVTDLSTQVLSLSEQLRRLS"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(2567..3052)
                     /locus_tag="CHE86_RS25410"
     CDS             complement(2567..3052)
                     /locus_tag="CHE86_RS25410"
                     /inference="COORDINATES: protein motif:HMM:NF016710.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_012782630.1"
                     /translation="MNSLLTLAKDLEQKSKVQQQTTGEMLKAAFSEHEKSVRAELNESE
                     KRISAAIHDHDRMLSSAMSQRTKGMLRMVSQTWLTIVLVSVLLIASSAGILWWQGQQIL
                     DNYTTIREQKSTQAMLSERNSGVQLTTCGEERRRCVRVNPDAGRFGEDSSWMILAGK"
                     /name="MbeB family mobilization protein"
     gene            complement(<3087..3791)
                     /locus_tag="CHE86_RS26040"
                     /pseudo=""
     CDS             complement(<3087..3791)
                     /locus_tag="CHE86_RS26040"
                     /inference="COORDINATES: protein motif:HMM:NF015397.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(3730..4053)
                     /locus_tag="CHE86_RS25240"
                     /old_locus_tag="CHE86_25240"
     CDS             complement(3730..4053)
                     /locus_tag="CHE86_RS25240"
                     /old_locus_tag="CHE86_25240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_001555769.1"
                     /translation="MLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPARAGKLPSI
                     SPALLRQLAGMGNNLNQIARQVNAGGSSGLDRVQVVAALMAIDAGLERLRHAVLEKGAD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     Typing          complement(66..144)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="5.8899999999999995e-34"
     Typing          220..708
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="86.747"
                     /coverage="94.0"
                     /evalue="7.82e-151"
     Typing          complement(2245..3740)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="98.998"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 gacgggcggg aaatcttttc ccggtcggcg cggtgttggg caagccgcag gcgcgtcagt
       61 ggcatttagc gggtttcggg gcgcagccct gaaccagtca cgtagcgcta gcggagtgta
      121 tactggctta ctatggtggc acgacgggaa tcgggatgaa atagtcagtc atgaaaactg
      181 tgagatgagg ctcaggtgcg taagaggctg atgcctgtcc cggtggatat tccgcttcct
      241 cgctcactga ctcgctacgc tcggtcgttc ggctgcggcg agcggtacgg actcacggat
      301 aaagacgtgg cggggaaata cgtgaatgca ggaggggaag aaaggatgcg ccgctgccgg
      361 ttttccatag gctccgcccc cctgacaagc atcacagaat ctgacgctca aatcagtggt
      421 ggcgaaaccc gatgcggctt aaagatacca ggcgtttccc cctgatggct ccctcgtgct
      481 cccccgcatt cctgcctttc ggtttaccgg tgtcattccg ctgttatggc cgcggtttct
      541 cattccacgc ctgacactca gttccgcgaa ggcagttcgc tccaggattg actgtatgca
      601 cgaacccccc gttcagtccg actgctgcgc cttatccggt aactatcgtc ttgagtccaa
      661 cccggaaaga cacgaaaaat cgctactggc agcagccatt agtaactgga ggtatacgag
      721 agacaaatta agaggtcttg aagtatgggc ctgagagagg ctacactgaa agaacagttt
      781 tggtttctgc ggtctcgtat acccagttac ctggttaagc agttccccaa ctgacttaac
      841 cttcgatcaa accacctccc caggtggttt tttcgttttc agagcaagag attacgactg
      901 taacgacagg atcacaagaa gatcatttac tcagagagac taactaccac tatgtttgcc
      961 tatcaacata cttaggaaac attacttgag ttaacgactc caccttactt ttagtatctc
     1021 gcaatgaatc ttccgaccgc cgttgtgttg aagttctatt gcgccaccgg ggtataaatc
     1081 actttcgttt aactcaatta aaagctcgtt cttgtgagca tcctctaaat aaaggtaata
     1141 acacccacca taaaggttct gcgtatctgg cacggcaaca aaagatttct ttccgaacag
     1201 taaaacagcc tctttttctc catgctctgt cagcaataat cgaaattctt gtccattcaa
     1261 tcctcttttc gcatgaaaaa acgacctata cttagatggt tagtgaccat atccacttta
     1321 cctttaagca gggaacctat tatgaataaa aaaacgctgt tggcggccat gatggtcgcg
     1381 ttggtgacct ttgccgctgc tggatgttct tcaaaccaag aaataaaaac cacagatgat
     1441 cgcactatcg ttacagacgg caaacccaaa gttgacagtg atacgggatt agtatcctac
     1501 aaagatgccc atacaggccg aaccgaacag atcaaccgtg acaaaattac caacatgagt
     1561 gaactagaca actgatacgg ataaaaggag ctggctttga aaaagatttt tgtttcagtg
     1621 ttcgcagcgg cagttgcgct ttcagcccta accggctgca cgcgcacaag ctatgccatc
     1681 cacaccaacg acgggcgtac aattgtcagc gacggcaagc ctacagaatc agactcaggc
     1741 ctgctgggct ataaagacgc aaatggtgtc aaacagcaga tcaataaagc cgacgttaaa
     1801 gaagtctctg aaattccgca ttgaggcatc gctctctccg aaaagggccg ctaatgcggc
     1861 ccttttcttt atctgcccca acaacaggca aaaaaagccc ccgctggggg ccaaatacct
     1921 gcagtggctg gatagtactg cattcctgat gaaggagacg aataagtatg ggccggattt
     1981 ttgcgtctgc aggctcggtc gccacaattt ttccgtaccc gccaggcatc atgcttttac
     2041 cataacatcc cttgcccgca cctctccgga cgggttcagc gcgaatgcgg cgtcagtcct
     2101 gcaaaaccga cagtaaacca ccccgcaaac cgtgcattct gcgcctgata aatctcaccc
     2161 gactgcatag ccatgcagcc gggtgaatgg caccgggttt cggcgcagat cctcaatgaa
     2221 agccccgttt tatccggtta tcacagcgac ggaccgtcat actcctgctg acgctgcgat
     2281 cgttccagct ccagcgcttt ctggtgctgc gctgcgcgct cctgctcccg gtgtgcctcg
     2341 atgtcgttca gccttacgac aaccggcgca gctgctcgct taaactcagc acctgcgtgc
     2401 tcaagtccgt gacgcgctcg ctcagcgctg cgttctcccg ttgcataaga ccacacatcg
     2461 tccgccattc cgcgaaggcg ctctcccact cgtccagcct tttcgagtag tcctgctgta
     2521 gctgctctaa tgcgctcagc aactgttttt ccagttccgt catgtgctat ttccccgcca
     2581 gtatcatcca gctcgaatcc tctccgaacc gtcccgcgtc cgggttcacc ctcacgcagc
     2641 ggcgtcgttc ctctccgcag gtcgtgagct gcacgccgct gttcctctcg gacagcatgg
     2701 cctgcgtgct cttctgctcc cggatggtcg tgtaattgtc gagtatctgc tgcccctgcc
     2761 accatagaat gcccgcactt gaggctatca gcagcacgga gaccaggacg atggtcagcc
     2821 acgtctggct gaccatgcgc agcatccctt tcgtacgctg gctcatggct gaggacagca
     2881 tccggtcgtg gtcgtggatg gcggcgctga ttctcttctc gctttcgttc agttccgctc
     2941 tgacagactt ctcgtgctcg ctgaatgcgg ctttcagcat ctcgccggta gtctgctgct
     3001 gcactttcga tttctgctct aagtccttcg ccagcgttaa aagactgttc atagatggct
     3061 cccttcagtc ggatgtttcg ccccccgtcc gggtcggcaa tgctgatgct gctttttgtg
     3121 gtgcgaacca cctcaaaacc tgcgctttcc agcgcctcag tgacgtcctg acgcgttttc
     3181 agctccccgg acgaggctaa ggccagtaaa ccccgcgtaa tcgcctgggc ggcttcctgc
     3241 ttcgtttccg gcagcgcgga cggcgtgacc agtgcccgcc ggttttccgg cgcgttcggg
     3301 tcgtgcagcc ccagactgcc gttcacgatg gtctgccagg catcaatgcg aggacggtcg
     3361 gcgcggtcat agtatggctg gagccgtttg ccggtcagca gctccgtgtt cgggatcagg
     3421 aagttcagct ccagccgccc cttgtcccgg tgctcaaccc acagcacgct gtactggtct
     3481 ttatcgagtc cgggcatcag aacccgctcg aagctcgcca tcagcgtttc acgctgcccg
     3541 ggcggtaagt cctgttcggc aaaggacagc accccggagg tgtacttttt ggcgtagggc
     3601 gaggcgtcga taagctcccg gacttcctcc ggcttcccct gaagaacgct ggcaccgtcg
     3661 cgctggcggt ctttccccag cagataatca accgggccgg caccgcctcc gcgtccccgg
     3721 ggatgaaact taacgatcat cgtcagcccc cttttccagt acggcatgcc gcagccgctc
     3781 gagtccggca tcgatggcca tcagcgcggc gacgacctgc acgcggtcga gaccgctact
     3841 gccaccggcg ttaacctggc gggcaatctg gttgaggttg ttccccatgc cggcaagctg
     3901 acgaagcagc gccggcgaga tcgagggaag tttgccggcc cgggcgggct tctcgtccag
     3961 gcacgtctgc cgcatccagg ccgcgagctg tttaccgtcg cagcgttcca gcagacggcg
     4021 gtgctcatct tctgttaccc acatcgtgag cattttgctg cgtttgtctg ccaatccggc
     4081 ctcctgataa cgccgg
//
