LOCUS       NZ_CP030184             2318 bp    DNA     circular CON 14-MAY-2024
DEFINITION  Salmonella enterica strain SA20030575 plasmid pSA20030575.3,
            complete sequence.
ACCESSION   NZ_CP030184
VERSION     NZ_CP030184.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06045011
            Assembly: GCF_003324915.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2318)
  AUTHORS   Nash,J.H.E., Robertson,J. and Bessonov,K.
  TITLE     Completed Genome Sequences of 32 Strains from Various Serotypes of
            Salmonella enterica
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2318)
  AUTHORS   Nash,J.H.E., Robertson,J. and Bessonov,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-JUN-2018) Public Health Agency of Canada, National
            Microbiology Laboratory at Guelph, 110 Stone Road West, Guelph,
            Ontario N1G3W4, Canada
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: MAY-2018
            Assembly Method                   :: unicycler v. 0.4.3
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Reference-guided Assembly         :: missing
            Genome Coverage                   :: 95x
            Sequencing Technology             :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003324915.1-RS_2024_05_14
            Annotation Date                   :: 05/14/2024 01:50:26
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,973
            CDSs (total)                      :: 4,853
            Genes (coding)                    :: 4,704
            CDSs (with protein)               :: 4,704
            Genes (RNA)                       :: 120
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 149
            CDSs (without protein)            :: 149
            Pseudo Genes (ambiguous residues) :: 0 of 149
            Pseudo Genes (frameshifted)       :: 55 of 149
            Pseudo Genes (incomplete)         :: 104 of 149
            Pseudo Genes (internal stop)      :: 38 of 149
            Pseudo Genes (multiple problems)  :: 38 of 149
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP030184.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2318
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="SA20030575"
                     /db_xref="taxon:28901"
                     /plasmid="pSA20030575.3"
     gene            185..424
                     /locus_tag="CHC58_RS26245"
                     /old_locus_tag="CHC58_26235"
     CDS             185..424
                     /locus_tag="CHC58_RS26245"
                     /old_locus_tag="CHC58_26235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001560795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001560795.1"
                     /translation="MIKKICITVIVVFLLLVGYGAWIGSEQNQRGVSLFEVAYTYNAMN
                     PISRIGYTFMLKRNHALVERAGEVKKSIDSMSGE"
                     /name="hypothetical protein"
     gene            448..747
                     /locus_tag="CHC58_RS26250"
                     /old_locus_tag="CHC58_26240"
     CDS             448..747
                     /locus_tag="CHC58_RS26250"
                     /old_locus_tag="CHC58_26240"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_016247612.1"
                     /translation="MKKILFCSLLLLSASSFAQQFHYQCEGRDLKIMLSPNAAFLDGKS
                     FEYKNGETNGETTKMTFFGPSGEVLKFLVNPVNNLYRMGLTSGATFEEINCTEI"
                     /name="hypothetical protein"
     gene            1768..2034
                     /locus_tag="CHC58_RS26270"
                     /old_locus_tag="CHC58_26255"
     CDS             1768..2034
                     /locus_tag="CHC58_RS26270"
                     /old_locus_tag="CHC58_26255"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_240196222.1"
                     /translation="MKRSQLTLIDGCFMFGFSPGELMNLCPDERLLFVRMISAMLRRSG
                     GDAGAVMFETYRHIVSDTNQARRSYMLDLLESVRHDYVHGGYT"
                     /name="hypothetical protein"
     gene            complement(2082..2270)
                     /locus_tag="CHC58_RS26275"
                     /old_locus_tag="CHC58_26260"
     CDS             complement(2082..2270)
                     /locus_tag="CHC58_RS26275"
                     /old_locus_tag="CHC58_26260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_000165998.1"
                     /translation="MTKQESAALNMAKFIRAQSLLLLEKLDVLDLDDEAADCERMHEQA
                     EALYQKLSARFGIQDGE"
                     /name="Rop family plasmid primer RNA-binding protein"
     Typing          1452..1624
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="91.954"
                     /coverage="100.0"
                     /evalue="2.04e-62"
     Typing          complement(981..1527)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.091"
                     /coverage="90.0"
                     /evalue="0.0"
ORIGIN
        1 attcacttga gtgcatagcc atgcaggtac gcagaaatca tcaggggcgt tttttctcga
       61 tatgggcaca gaaaggtgta tgtttcaggc cggagtcctc agaaacgccc tgagggcgcc
      121 tgaggtggtg cgggcaacgg atgttatgtt caattctgtt ttcttcatat tatctggata
      181 gggaatgata aaaaaaatct gcattactgt tatcgtcgtt tttttgctgt tggttggcta
      241 tggtgcttgg attggatctg agcaaaatca gcgaggagta tctttatttg aggttgcata
      301 tacatacaac gcaatgaatc caattagtcg gatcggctat acatttatgc tgaagagaaa
      361 tcatgcttta gtcgagaggg ctggagaggt taagaaatct attgatagca tgagtggtga
      421 gtgatttttt aaatttaaag gactgatatg aaaaagatac ttttttgttc gctgcttctt
      481 ctttctgcaa gttcatttgc acaacaattc cattatcagt gtgaaggacg agatttaaag
      541 ataatgcttt cacctaatgc agcttttctt gatggtaaat cattcgaata taagaatgga
      601 gagacgaatg gggaaacgac aaagatgaca ttctttggtc cttctggtga ggttctcaag
      661 tttttggtta atcctgtcaa caacttatat cgtatggggc tgacttcagg tgctacattt
      721 gaagagataa attgcactga aatctagaaa tattttatct gattaataag atgatcttct
      781 tgagatcgtt ttggtctgcg cgtaatctct tgctctgaaa acgaaaaaac cgccttgcag
      841 ggcggttttt cgaaggttct ctgagctacc aactctttga accgaggtaa ctggcttgga
      901 ggagcgcagt caccaaaact tgtcctttca gtttagcctt aaccggcgca tgacttcaag
      961 actaactcct ctaaatcaat taccagtggc tgctgccagt ggtgcttttg catgtctttc
     1021 cgggttggac tcaagacgat agttaccgga taaggcgcag cggtcggact gaacgggggg
     1081 ttcgtgcata cagtccagct tggagcgaac tgcctacccg gaactgagtg tcaggcgtgg
     1141 aatgagacaa acgcggccat aacagcggaa tgacaccggt aaaccgaaag gcaggaacag
     1201 gagagcgcac gagggagccg ccagggggaa acgcctggta tctttatagt cctgtcgggt
     1261 ttcgccacca ctgatttgag cgtcagattt cgtgatgctt gtcagggggg cggagcctat
     1321 ggaaaaacgg cttcgccgcg gccttatcgt ttccctgtta agtttcttcc tggcatctcc
     1381 caggaaattt ccgccccatt cgtaagcccg caccgctcgc cgcagccgaa cgaccgagcg
     1441 cagcgagtca gtgagcgagg aagcggaata tctcctgtct catatattcc gcttacgctc
     1501 tgctgctgca ttttcctcct gccacatgaa gcacttcact gattcccgca cccgtgccta
     1561 catagtaagc cagtatacac tccgctagcg ctacgtgact ggttcagggc tgcgccccga
     1621 cacccgctaa aagcactgac gcgcctgcgg cttgcccaac cccgcgccgt ccgggaaaga
     1681 atttcccgat cgacccgacg tttctgttta cctgtgatgt taatgtttgg atctttttcc
     1741 cgggtttacc tattttaatg aagcgtaatg aagcgttcac agctgacgtt aatagatggg
     1801 tgcttcatgt ttggtttttc accaggagaa cttatgaacc tttgccccga tgaacgtctg
     1861 ctctttgtgc ggatgatttc cgctatgctt cgccgttcgg gcggtgatgc gggtgctgtt
     1921 atgtttgaga cgtatcgcca tattgtgtcc gataccaatc aagctcgtcg ttcctacatg
     1981 ctcgacctgc tcgaaagcgt caggcatgac tatgtacacg gtgggtatac atagttgcct
     2041 tggatacgct tttcgtctaa gtgagcgttc ttttcgtctc tttattcgcc gtcctgtata
     2101 ccgaagcgtg cgctcagctt ctgataaagc gcttctgcct gttcgtgcat tcgctcacag
     2161 tcggctgcct cgtcatcaag atcgagcacg tcgagttttt cgagcagcag cagcgactgc
     2221 gcccggataa attttgccat gttcagtgcg gctgattcct gttttgtcat acggcttttt
     2281 cccggtttta tggtgatcgc agactgaaat cttacttc
//
