LOCUS       NZ_CP030107             2372 bp    DNA     circular CON 04-JAN-2024
DEFINITION  Acinetobacter baumannii strain DA33382 plasmid pDA33382-2-2,
            complete sequence.
ACCESSION   NZ_CP030107
VERSION     NZ_CP030107.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09460321
            Assembly: GCF_003296225.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 2372)
  AUTHORS   Nicoloff,H., Hjort,K. and Andersson,D.I.
  TITLE     High prevalence of unstable heteroresistance caused by gene
            amplification in clinical bacterial isolates
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2372)
  AUTHORS   Nicoloff,H., Hjort,K. and Andersson,D.I.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-JUN-2018) Department of Medical Biochemistry and
            Microbiology, Uppsala University, Husargatan 3, Uppsala 75442,
            Sweden
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: CLC Genomics workbench v. 11.0.1
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 145.0x
            Sequencing Technology             :: PacBio; Illumina MiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/04/2024 18:00:43
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,935
            CDSs (total)                      :: 3,840
            Genes (coding)                    :: 3,766
            CDSs (with protein)               :: 3,766
            Genes (RNA)                       :: 95
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 73
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 74
            CDSs (without protein)            :: 74
            Pseudo Genes (ambiguous residues) :: 0 of 74
            Pseudo Genes (frameshifted)       :: 34 of 74
            Pseudo Genes (incomplete)         :: 36 of 74
            Pseudo Genes (internal stop)      :: 19 of 74
            Pseudo Genes (multiple problems)  :: 13 of 74
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP030107.1.
            Bacteria and source DNA available from Dan I Andersson.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2372
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="DA33382"
                     /serotype="ST1567"
                     /isolation_source="Tracheal secretion"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /plasmid="pDA33382-2-2"
                     /geo_loc_name="Germany"
     gene            573..1514
                     /gene="repM"
                     /locus_tag="DPV67_RS19220"
                     /old_locus_tag="DPV67_19220"
     CDS             573..1514
                     /gene="repM"
                     /locus_tag="DPV67_RS19220"
                     /old_locus_tag="DPV67_19220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000711927.1"
                     /GO_function="GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein RepM"
                     /protein_id="WP_073820198.1"
                     /translation="MKDLIVKDNALINASYNLDLVEQRLILLSIIEARESGKGINANDP
                     LTIHAESYINHFNVHRNTAYQALKDACKDLFARQFSYQEQRGKGIANITSRWVSQIAYI
                     DNTASVELIFAPAIIPLITRLEEQFTSYELQQIKGLSTAYAIRLYELLIAWRSTGKTPI
                     IETQELRRKLGVLDGEYKMIADFKKRVFEPSIKQINEHTDITVKSEQHKTGRSITGFSF
                     RFKQKAQPKLEQKTDPKRDPNTPDFFVEMTDAQRHLFGNKLAHDARVQSEYSHLIGTGS
                     YEDFAKLLADMLAEEQHFKMFYPLLVEHGYKA"
                     /name="repM"
ORIGIN
        1 gcgattgagc gttataaaaa tttcgtccct gccttttccc tgattacaag cttactattg
       61 cgttataacg agatttacag agcgaagcga ctgtattaat tggcttcatg acgagcgaag
      121 cgagcataaa gctttatgag cgaagcgaat ccattcttgt ttttagcgtc ctagctggtc
      181 tttgaaaaaa ctgcccccag gaatcgagcg aagcgagatt caatagagtt tgagcgaagc
      241 gaaaacatag ggcagtttta aatgccgttt ttaatttttt tgggctttta ataataaaaa
      301 agcttttaaa tgcttttagg tacgctgaaa gcgttgatat acgtgcgttt cagcgcttat
      361 atgtggacac ttaccttgca atatgtggac acttaccttg caagattttt tcaatatgtg
      421 gacacttacc ttgcaagtac tgacaaaaaa aatattgtcc ataaaacagc atttaccttg
      481 caacgttttg tctgtttaga gttgatatat tgacacaaat tacaatgtca atataatgac
      541 tagaataaaa atgtcatatt agaagattta taatgaaaga tttgattgtg aaagataacg
      601 ctttaattaa cgcaagctat aatttggatt tggttgaaca gcgacttatt ctgttatcaa
      661 ttatcgaagc tcgcgaaagt ggtaaaggaa tcaatgcaaa tgacccttta acaattcacg
      721 cagaaagcta tattaaccat tttaatgttc acagaaacac agcttaccaa gcgttaaaag
      781 atgcttgcaa agaccttttt gcacgccaat ttagttacca agaacaacgt gggaaaggga
      841 ttgcaaatat aaccagtcgt tgggtttctc aaatcgccta catagacaat actgcatctg
      901 tagagcttat tttcgcccct gcaatcatcc ctttaataac aagactagaa gaacagttca
      961 caagttatga gttacagcaa attaaggggc taagcacagc ttatgcaatt cgtctttatg
     1021 aattgctcat cgcttggagg agtacaggga aaacgccaat tattgaaact caagaacttc
     1081 gcaggaagtt aggtgttctt gatggtgaat ataaaatgat tgctgacttt aaaaagcgag
     1141 tatttgagcc atctatcaag caaataaacg aacatacaga cataaccgtt aagtcggaac
     1201 agcacaaaac aggtcgttca attactggat tttcattccg attcaaacaa aaggcacagc
     1261 caaaattaga acaaaaaacc gaccctaaaa gagatccaaa cacacctgat ttctttgtcg
     1321 aaatgaccga tgcacaacgc cacttatttg ggaacaaact agcccatgat gctcgtgtac
     1381 aaagcgaata cagccattta attggtactg gaagctatga agactttgca aaattactgg
     1441 cggatatgct tgcagaagaa cagcatttta agatgtttta ccctttgctt gtagagcatg
     1501 gttacaaagc ataaatcttg tcgtattcta tcaatggtag ataagtcatt tcgaccttcc
     1561 ttatctatgt acaagataag gtggcgccac caatacgcca atattggtgg atagccacca
     1621 acccctctaa attgcgtttt aagcgatcca aatccaacaa gctacattca catacccact
     1681 gcgagcaaag ctcgaaatat cgcatcctat gagcaaatag agcatgtaat cagggagggt
     1741 gtgtcttgtt tttgcatttc atcagttcac tcgtagacac tcgctctaaa aatctatctg
     1801 tgcttttcat tttggcttta gccaaagaaa gccccgaagg ggtgtgaagc gaaagcggaa
     1861 catcatcgaa gccccagcgg agatgactgg ggggagccga caacgtaaaa gggagtggac
     1921 acgaacttta gacatcccca gatgtcgtta gttgttgggg ggcaagccca ccccgtcaaa
     1981 ctatcccgaa ggggagttga cccacctcgt tttagtgtaa gcgttcagcg aatccgaagg
     2041 acatacgagc ctaagcgaaa tatgcaccta aaagggggtg ggtcaactcc gtaggaggat
     2101 gacggggcgc gagcacgaag tgcgctgcaa cttggagcga tagcggaaag tgaaaggcaa
     2161 caaaaaacga ttattaaggg cgtccagccc ttaaagtaca aggaatcctg acgtccagga
     2221 aggacgagcg aagcgagctt gtacggtaat tgtttttagg cgcagcgaag cgaagtgtct
     2281 gtgcctttta ctgtgctttt atcggtgcac taaaaatcca ataaaagcac catagaaagc
     2341 acagatagaa ttaaccgagc gagtgtctac ga
//
