LOCUS       NZ_CP030001             4251 bp    DNA     circular CON 12-SEP-2023
DEFINITION  Salmonella enterica subsp. enterica serovar Brandenburg strain
            SA20113174 plasmid pSA20113174.2, complete sequence.
ACCESSION   NZ_CP030001
VERSION     NZ_CP030001.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09237640
            Assembly: GCF_003324835.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Brandenburg
  ORGANISM  Salmonella enterica subsp. enterica serovar Brandenburg
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4251)
  AUTHORS   Nash,J.H.E., Robertson,J. and Bessonov,K.
  TITLE     Salmonella Enterica genomes from various sources
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4251)
  AUTHORS   Nash,J.H.E., Robertson,J. and Bessonov,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-JUN-2018) Public Health Agency of Canada, National
            Microbiology Laboratory at Guelph, 110 Stone Road West, Guelph,
            Ontario N1G3W4, Canada
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: unicycler v. 0.4.3
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Reference-guided Assembly         :: missing
            Genome Coverage                   :: 68x
            Sequencing Technology             :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/12/2023 01:39:25
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,772
            CDSs (total)                      :: 4,652
            Genes (coding)                    :: 4,483
            CDSs (with protein)               :: 4,483
            Genes (RNA)                       :: 120
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 169
            CDSs (without protein)            :: 169
            Pseudo Genes (ambiguous residues) :: 0 of 169
            Pseudo Genes (frameshifted)       :: 86 of 169
            Pseudo Genes (incomplete)         :: 106 of 169
            Pseudo Genes (internal stop)      :: 32 of 169
            Pseudo Genes (multiple problems)  :: 48 of 169
            Pseudo Genes (short protein)      :: 1 of 169
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP030001.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4251
                     /organism="Salmonella enterica subsp. enterica serovar
                     Brandenburg"
                     /mol_type="genomic DNA"
                     /strain="SA20113174"
                     /serovar="Brandenburg"
                     /sub_species="enterica"
                     /db_xref="taxon:149387"
                     /plasmid="pSA20113174.2"
     gene            86..>520
                     /locus_tag="DOE62_RS25890"
                     /pseudo=""
     CDS             86..>520
                     /locus_tag="DOE62_RS25890"
                     /inference="COORDINATES: protein motif:HMM:NF015397.3"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            555..1052
                     /locus_tag="DOE62_RS25260"
     CDS             555..1052
                     /locus_tag="DOE62_RS25260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001086853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_143549827.1"
                     /translation="MNSLLTLAKDLEQKSKAQQQTTGEMLKAAFSEHEKSVRAELNESE
                     KRISAAILDHDRKLSSAMSQRTKGMLRMVSQTWLTIVLVSALLIASSAGILWWQGQQML
                     DNYTSIREQKDALEKLNARTWGVRYQEDNQGRFLVLPEGVKADTNWTFDNGRKNGIRLV
                     QE"
                     /name="MbeB family mobilization protein"
     gene            1059..1274
                     /locus_tag="DOE62_RS25265"
     CDS             1059..1274
                     /locus_tag="DOE62_RS25265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_063617430.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWENAFAEWRTMSGLMQRENA
                     ALSERVTGLSRQVQSLSEQLRRLSNG"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(1641..2138)
                     /locus_tag="DOE62_RS25070"
                     /old_locus_tag="DOE62_25060"
     CDS             complement(1641..2138)
                     /locus_tag="DOE62_RS25070"
                     /old_locus_tag="DOE62_25060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019842774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_084567316.1"
                     /translation="MKKQILALALLSLPLIGMAKDSGYGNTEWGMTPNQVVAAQKGKAH
                     LIPPQKYKDQWGKVSIEDVNIGSGIYTVTFIFDASDKLVQTNVASKEKKNEGIANDQFN
                     LLNQLLTQKYGKPQFVSDEKATWKTDATTIELNKMIISGIMAQTLVRYIPNKTVISDTS
                     NL"
                     /name="hypothetical protein"
     gene            complement(2148..2735)
                     /locus_tag="DOE62_RS25075"
                     /old_locus_tag="DOE62_25065"
     CDS             complement(2148..2735)
                     /locus_tag="DOE62_RS25075"
                     /old_locus_tag="DOE62_25065"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_059337246.1"
                     /translation="MIRKIFFASAIVVAISGCTAMDKLAGMGVVSQQTSTFDNSTVIEV
                     SPNSLYDPNSTWGTPLQLGAIWSSAYPDEAGLILSYNSNVSSGNAAYLGLTGIDINVDG
                     KISSYKAQQQTNLSSSSYNSVSKTIYTSSKNTIVIPYKLLESMVSAKNCRIRIHTSQGN
                     QDIDFSAQSIPGGKATAIVSIKEFLAKVERFK"
                     /name="hypothetical protein"
     gene            complement(3050..3163)
                     /locus_tag="DOE62_RS25950"
                     /old_locus_tag="DOE62_25070"
     CDS             complement(3050..3163)
                     /locus_tag="DOE62_RS25950"
                     /old_locus_tag="DOE62_25070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001354639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_059446996.1"
                     /translation="MHEPPVQSDRCALSGNYHLESNPERHDKAPLAAATGN"
                     /name="hypothetical protein"
     gene            3805..4128
                     /locus_tag="DOE62_RS25085"
                     /old_locus_tag="DOE62_25075"
     CDS             3805..4128
                     /locus_tag="DOE62_RS25085"
                     /old_locus_tag="DOE62_25075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_179133778.1"
                     /translation="MLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPARAGKLPSI
                     SPALLRQLAGMGNNLNQIARQVNAGGGSGHDRVQVVAALMAIDAGLERLRQAVLEKGAD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     Typing          3518..3696
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="89.011"
                     /coverage="83.0"
                     /evalue="3.460000000000001e-56"
     Typing          complement(3051..3542)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="91.182"
                     /coverage="94.0"
                     /evalue="0.0"
     Typing          3..1378
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="90.632"
                     /coverage="99.0"
                     /evalue="0.0"
     Typing          3806..4125
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="98.131"
                     /coverage="100.0"
                     /evalue="2.51e-63"
ORIGIN
        1 cgcctcgccc tacgccaaaa agtacacctc cggcgtgctg tcctttgcgg aacaggattt
       61 gccgcccggc cagcgtgaaa agctgatggc gagcttcgag cgggttctga tgcccgggct
      121 cgacaaagat cagtacagcg tgctgtgggt tgagcaccag gacaaagggc ggctggagct
      181 gaacttcctc atcccgaaca cggagctgct gaccggcaaa cggctccagc cgtattacga
      241 tcgcgccgac cgtccgcgca tcgacgcctg gcagaccata gtgaacggca ggctggggct
      301 gcacgacccg aacgcgccgg agaaccggcg ggcgctggtc acgccgtccg cgctgccgga
      361 agcgaagcag gaagccgccc aggtgattac gcgcggcctg cttgcccttg cctcagccgg
      421 ggagctgaaa acgcgccagg acgtcaccga ggcgctggaa aacgcaggtt tcgaggtggt
      481 gcgcaccacg aaaagcagca tcagcattgc cgacccggac ggggggcgaa acatccgact
      541 caggggagcc atctatgaac agtcttttaa cgctggcgaa ggacttagag cagaaatcga
      601 aagcgcagca gcagactacc ggcgagatgc tgaaagccgc attcagcgag cacgagaagt
      661 ctgtcagagc ggaactgaac gaaagcgaga agagaatcag cgccgccatc ctagaccacg
      721 accggaagct gtcctcagcc atgagccagc gcacgaaagg gatgctgcgg atggtcagcc
      781 agacgtggct gaccatcgtc ctggtctccg cgctgctgat agcctcgagc gcgggcattc
      841 tgtggtggca ggggcagcag atgctcgaca attacacgag catccgggag cagaaggacg
      901 cgctggagaa gctgaacgcg cggacgtggg gcgtgaggta tcaggaagac aaccaggggc
      961 gttttctggt gctgccggaa ggcgtgaaag cggacacgaa ctggacgttc gacaacggca
     1021 ggaagaacgg catcagactg gtgcaggagt agagcagcat gacggagctg gaaaaacagt
     1081 tgctgagcgc attagagcag ctacagcagg actactcgaa aaggctggac gagtgggaga
     1141 acgccttcgc ggaatggcgg acgatgtctg ggcttatgca acgggagaac gcggcgctga
     1201 gcgagcgcgt cacgggcttg agcaggcagg tgcagagttt gagcgagcag ctgcgccggt
     1261 tgtcgaacgg ctgaatgccg tcgagctgca tcagcagcag gagcgcgcgg cgcagcatca
     1321 gaaagcgctg gagctggagc gatcgcagcg gcagcggacg tataacggcc cgtcgctgtg
     1381 ataaccggat aaaacggggc tttcggcggg tatctgcgct gaaaacctga gccattcacc
     1441 cggctgcatg gctatgcagt ccggggaaat ttaccggacg caaacggggc ggtttaccgg
     1501 gcgctttgct gcgggtttta ccaagcaggc accgtattca cgccgaacct gcccggagcg
     1561 gtgcgggcaa gagatgttat gttcaatctc ccacctcaga tatagaaaca ggagagagac
     1621 actcagtgag gctacaatta ttacaggtta gacgtgtcag aaatcacggt cttattagga
     1681 atgtagcgaa ctagtgtttg agccataatt ccggagatga tcatcttatt tagctcaatt
     1741 gttgtagcat cagttttcca tgttgctttt tcatcactta caaactgtgg tttgccgtac
     1801 ttctgtgtaa gtaattgatt taataagtta aattggtcgt tcgctattcc ctcgtttttc
     1861 ttttctttgc tggcaacgtt ggtttggact aatttatctg atgcgtcaaa aataaacgta
     1921 actgtatata ttccactacc tatattcacg tcttcaatgc tcacttttcc ccattggtct
     1981 ttatactttt gaggggggat taaatgagct tttcctttct gggctgcaac gacctgattt
     2041 ggggtcatac cccattcggt attgccataa ccagagtcct ttgccatgcc aatcagtggc
     2101 agtgatagca aagcgagtgc aagaatctgc ttcttcatga cgcctcctta tttaaaacgt
     2161 tcgactttgg ccaggaactc tttaatggaa acgatcgctg tcgctttacc tccggggata
     2221 ctttgtgctg agaagtcgat gtcttgattt ccttggcttg tgtgtatgcg aatgcggcag
     2281 tttttagctg ataccatgct ctccagcaat ttatacggga taacgatagt attcttgcta
     2341 gaggtataga tcgtcttgga tacggagtta tatgagctgc tgcttagatt agtttgttgc
     2401 tgtgctttat agctggatat tttaccatca acatttatat caatccccgt caaacctaag
     2461 tatgcggcat ttccgctaga tacattcgag ttgtaggaaa ggattagtcc agcctcatct
     2521 ggataggcac tagaccatat cgcgcccaac tgaagtggtg ttccccaagt gctgttagga
     2581 tcgtatagcg aatttggaga tacctctatg acagtcgagt tatcaaaggt tgatgtttgc
     2641 tgagaaacaa cacccattcc cgccaattta tccattgctg tacagccaga gatcgctact
     2701 acgatcgcag aagcaaaaaa aatcttcctt atcatttcgt tatcctattt ttttcttttt
     2761 aacagagact gaaaaaaaca tcgtattccc gaaaccattt tgcacacgat attctttttt
     2821 aaaaggattt tgaaaggatg cgggcagatc ttcttgagat ccttaagcga gagtcgtaat
     2881 ctcttgacca cgaaacgaaa aaaccgccct gcaaggcggt ttttcgaagg ttctcagagc
     2941 taccaactct ttgaaccgag gtaactggct tggaggagcg cagtcaccaa aacttgtcct
     3001 ttcagtttag ccttaaccgg cgcataactt caagactaac tcctctaaat cagttaccag
     3061 tggctgctgc cagtggcgct ttgtcgtgtc tttccgggtt ggactcaaga tgatagttac
     3121 cggacaaggc gcagcggtcg gactgaacgg ggggttcgtg catacagtcc agcttggagc
     3181 gaactgccta cccggaactg agtgtcaggc gtggaatgag ataaacgcgg ccataacagc
     3241 ggaatgacac cggtaaaccg aaaggcagga acaggagagc gcacgaggga gctaccaggg
     3301 ggaaacgcct gggatcttta tagtcctgtc gggtttcgcc gccactgatt tgagcgtcag
     3361 atttcgtgat gcttgtcagg ggggcggagc ctatggaaaa acggcagcgc cgtatccttt
     3421 ttccggcctt tcctgacttg agtgccatct ctttatcttg tcattcgtga gcaggtaacg
     3481 cccgccgcag cctcacggca ggagcgtagc gaccgagtga gcgaggaggc gtcatgtcac
     3541 cgttacctgc attttgcact tacgccctat agccgcattt tcccttgcaa catgaataac
     3601 ttccctgaat taccactccg atctaacata ttcagccagt atacactccg ctagcgctac
     3661 gtgactggtt cagggctgcg ccccgaaacc cgctaaaagc cactgacgcg cctgcggctt
     3721 gtccaacacc acgccgttcg ggaaaaaatt tcccgcccgt cccggcgtta tcaggaggac
     3781 agattggcag acaaacgcag caaaatgctc acgatgtggg taacggaaga cgagcaccgg
     3841 cgtctgctgg agcgctgcga cggtaagcag ctcgcagcct ggatgcggca gacgtgtctg
     3901 gacgaaaagc cggctcgcgc cggcaaactt ccctcgatct cgccggcgct gcttcggcag
     3961 cttgccggca tgggtaacaa cctcaatcag attgccaggc aggttaacgc cggtggcggc
     4021 agcgggcacg accgcgtgca ggtggtcgcc gcgctgatgg ccatcgatgc cggactcgaa
     4081 cggcttcgcc aggcagtgct ggaaaagggg gcagacgatg atcgttaagt ttcatcccag
     4141 agggcgcggc ggcggcgccg gtccggtgga ttatctgctg ggtaaagacc ggcagcgcga
     4201 cggcgccagc gttctgcagg ggaagccgga ggaagtccgg gagcttattg a
//
