LOCUS       NZ_CP029993             4593 bp    DNA     circular CON 14-JUL-2023
DEFINITION  Salmonella enterica subsp. salamae serovar 56:z10:e,n,x strain
            SA20011914 plasmid pSA20011914.1, complete sequence.
ACCESSION   NZ_CP029993
VERSION     NZ_CP029993.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09237642
            Assembly: GCF_003324795.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. salamae serovar 56:z10:e,n,x
  ORGANISM  Salmonella enterica subsp. salamae serovar 56:z10:e,n,x
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4593)
  AUTHORS   Nash,J.H.E., Robertson,J. and Bessonov,K.
  TITLE     Salmonella Enterica genomes from various sources
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4593)
  AUTHORS   Nash,J.H.E., Robertson,J. and Bessonov,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-JUN-2018) Public Health Agency of Canada, National
            Microbiology Laboratory at Guelph, 110 Stone Road West, Guelph,
            Ontario N1G3W4, Canada
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: unicycler v. 0.4.3
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Reference-guided Assembly         :: missing
            Genome Coverage                   :: 117x
            Sequencing Technology             :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 07/14/2023 03:31:33
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,581
            CDSs (total)                      :: 4,464
            Genes (coding)                    :: 4,278
            CDSs (with protein)               :: 4,278
            Genes (RNA)                       :: 117
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 186
            CDSs (without protein)            :: 186
            Pseudo Genes (ambiguous residues) :: 0 of 186
            Pseudo Genes (frameshifted)       :: 107 of 186
            Pseudo Genes (incomplete)         :: 92 of 186
            Pseudo Genes (internal stop)      :: 35 of 186
            Pseudo Genes (multiple problems)  :: 41 of 186
            Pseudo Genes (short protein)      :: 1 of 186
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP029993.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4593
                     /organism="Salmonella enterica subsp. salamae serovar
                     56:z10:e,n,x"
                     /mol_type="genomic DNA"
                     /strain="SA20011914"
                     /serovar="56:z10:e,n,x"
                     /sub_species="enterica"
                     /db_xref="taxon:2577863"
                     /plasmid="pSA20011914.1"
     gene            complement(297..488)
                     /locus_tag="DOE60_RS23945"
                     /old_locus_tag="DOE60_23935"
     CDS             complement(297..488)
                     /locus_tag="DOE60_RS23945"
                     /old_locus_tag="DOE60_23935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_000165986.1"
                     /translation="MTKQEKTALNMARFIRSQTLTLLEKLNELDADEQADICESLHDHA
                     DELYRSCLARFGDDGESN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            551..874
                     /locus_tag="DOE60_RS23950"
                     /old_locus_tag="DOE60_23940"
     CDS             551..874
                     /locus_tag="DOE60_RS23950"
                     /old_locus_tag="DOE60_23940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000956000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_001677263.1"
                     /translation="MLTIRVSDEEHARLLERCEGKRLAEWMRRVCLGEPVARTGKLPTL
                     SPPLLRHLAAIGNNLNQTARKVNSGHWSSIDRVHVVAALMAIEGELRQLRQAVREQGGR
                     DDS"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            1083..>1517
                     /locus_tag="DOE60_RS24620"
                     /pseudo=""
     CDS             1083..>1517
                     /locus_tag="DOE60_RS24620"
                     /inference="COORDINATES: protein motif:HMM:NF015397.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            1552..2112
                     /locus_tag="DOE60_RS24135"
     CDS             1552..2112
                     /locus_tag="DOE60_RS24135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000067488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_000067488.1"
                     /translation="MSNLLQMGTDFEKKLKERAASTENMLNSEFRKLEESVDKALSLNR
                     QKIRDAISEHTTSVKQQLDTLSTTVSTQLSTTEAELSRQQKNLLWQVIKGRVLFPALTA
                     LSVTGGIFLGCWGLIQWQESRIAKNILTIREQENTLAKLEAKTWGVTFVNGENGKFLVL
                     PDGVKGENTWTVGDKNAVRLVRE"
                     /name="MbeB family mobilization protein"
     gene            2119..2352
                     /locus_tag="DOE60_RS24140"
     CDS             2119..2352
                     /locus_tag="DOE60_RS24140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_000137388.1"
                     /translation="MTELEGHLLNALEHLQQDYMRRLNEWESAFAELQKMHAVTQQNNA
                     ILNERVVNLSQQVQLLAGQVDRLSRLFITNNR"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(3040..3879)
                     /locus_tag="DOE60_RS23970"
                     /old_locus_tag="DOE60_23960"
     CDS             complement(3040..3879)
                     /locus_tag="DOE60_RS23970"
                     /old_locus_tag="DOE60_23960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001354646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001354646.1"
                     /translation="MLTLFIFFVLLIAACFFCFAPPRRGYDRNEIIPYKIKLSINKYRL
                     YIYSSGKVRQYLLFLVILSLYYSIAEPFKSELIKNISYSLMAAFIFDTGLNFSKENITK
                     GVISTRWHNDLYSSFERMKAINKIYYPSNKEINTEGLSKAITSSLFNDDANSFAKRDFR
                     LMWDLSSEKYLSYKEIIIRKGDKLDAVCLRFINDDYKFLVNFNRDEEVFKYFPSIMQPS
                     LKTYRALSRLVNSIKDPSRFKFTTESLEMELLEYLELRNELFNDIEEVMGSYAQRAP"
                     /name="hypothetical protein"
     Typing          125..209
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="3.03e-37"
     Typing          3879..4330
                     /name="ColRNAI_rep_cluster_1857"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="83.0"
                     /evalue="0.0"
     Typing          865..2450
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ccgcagccga acgaccgagc gtagcgagtc agtgagcgag gaagcggaag agcgcctgat
       61 gcggcatttt ctccttacgc atctgtgcgg tatttcacac cgcatatggt gcacttttct
      121 tataatccgc actgatgcca catagttaag ccagtataca ctccgctatc gctacgtgac
      181 tgggtcaggg ctgcgccccg acacccgcta aaacccgctg acgcgccctg acgggcttgt
      241 ctgctcccgg catccgctca caggcaagct gtgaacgtct ccgggagctg catgtttcag
      301 ttgctttcac cgtcatcgcc gaagcgtgcg aggcaactac ggtagagttc gtcggcgtgg
      361 tcgtgaagtg attcgcagat gtctgcctgt tcgtccgcgt ccagctcgtt gagtttttcc
      421 agcagggtca gcgtctggct tctgataaag cgggccatgt taagggctgt tttttcctgt
      481 ttggtcatgg tcttaaggct ccttaatagg ggatttttta gggggaatga taccgatgaa
      541 acgcgagaag atgctcacga tacgggttag cgatgaggag cacgcccggt tactggaacg
      601 ctgcgagggt aaacgactgg cagaatggat gcggcgggtc tgtctggggg agccggttgc
      661 gcgcacagga aaactgccga cactatcgcc gccattgctg cggcatctgg ctgccatcgg
      721 gaacaatctg aaccagacag cccggaaggt gaacagcggc cactggtctt cgattgaccg
      781 ggttcatgtg gtggccgctc tgatggccat cgagggtgaa ttgcgccagt tgcggcaggc
      841 tgtcagggaa caggggggac gggatgatag ttaaatttca tgccaggggg aaaggcggtg
      901 gaagtggccc ggtcgattac ctgctggggc gggagcgtaa ccgcgaaggc gcaacggtgc
      961 tccggggtaa cccggaagaa atccgggaac tcattgatgc cacgccattt tcgaagaaat
     1021 acacgtcagg cgttctgtcg ttcgcggaga aggagttacc gccgggtgaa cgcgaaagag
     1081 tgatgacgag ctttgagcgt gttcttatgc ccggtctcga aaaagaccag tacagcattc
     1141 tctgggtgga acaccaggat aaggggcggc tcgaactgaa ttttgtcatt ccgaacatgg
     1201 aactacagag cggtaagcgc cttcagccgt actacgaccg tgcggacagg ccgaggataa
     1261 atgcctggca gacgctggtt aatcatcatt acgggctgcg tgacccgaac gcaccggaga
     1321 acagacggac gcttgtcaca ccgaataatc tgccaaaagc gaaacaggag gccgcagaag
     1381 cgattacacg gggtcttgag gcgctttacc gtgccggagc aataaaaacg cgtcaggatg
     1441 tcactgaggc gctcacagcg gcaggttttg aggtggtgag gacaaccaga agcagtatca
     1501 gtattgccga cccggagggg gggcggaatc tcaggctaaa gggggcgctg tatgagcaat
     1561 cttttacaaa tgggaacgga cttcgagaag aaactgaaag agcgagccgc ttctaccgag
     1621 aacatgctga acagcgagtt caggaagcta gaagagtctg tagacaaggc actgagctta
     1681 aacaggcaga aaatcagaga cgctatcagc gaacatacaa catccgtgaa acagcaactg
     1741 gatacgctga gcaccaccgt gagcacgcag ctcagcacca cagaggccga actgtcccgg
     1801 cagcagaaaa acctgctctg gcaggtgatc aaagggcggg tactgtttcc ggcgctgacc
     1861 gcgctcagcg tcacgggcgg cattttcctg gggtgctggg ggctgattca gtggcaggaa
     1921 agcaggattg cgaaaaatat cttgaccatc agagagcagg aaaacacgct ggcgaaactc
     1981 gaggcaaaaa cctggggggt gacgttcgtc aatggcgaga acgggaaatt tctggtgctg
     2041 ccggacgggg tgaaagggga aaacacctgg acggtgggcg acaagaacgc cgtgaggctg
     2101 gtcagggagt aaacgagtat gacggaactg gaagggcatt tgctgaacgc cttagagcat
     2161 ttgcaacagg actatatgcg gcggctgaac gagtgggaga gcgccttcgc agaattgcag
     2221 aagatgcacg cggttacgca acagaacaac gcgatactga acgagcgtgt cgtgaacttg
     2281 agtcagcagg tgcagctatt agccggacaa gtcgaccgct tgagtcggtt atttatcacg
     2341 aacaacagat aagggatgaa caggagcgtc aggcgcagga gcttgcccgg cgctggcatg
     2401 aagagcagga acccgaagcg cggatctggc gtggcccgtc aatggggatg tgaccggggt
     2461 accccctgaa atcgagccag tttgtggcac gccctacccg gatggcgcca atgttaatgt
     2521 acgtacatta gcattaacaa tatccaaacc tccccatttt gccccgttcg acggctggaa
     2581 cgtgcgaaac tgatcgtcat tcagtttcgc gcataactat gcatgaggtt aaaatttacc
     2641 aggcgcgatc gcggcagttt ttcgggtggt ttgttgctgt ttttacctgt ctgctgccgt
     2701 gatcgcgctg aacgcgttta agcggtacgc gcaatgcgac gttatggtaa atacggagta
     2761 ttttaattgc gggcctttgt tgtatatctc tgtcgtttgt ccccgggggg aagcattact
     2821 gctaacaagt cccgtgagaa aactgcgcaa tcgtattgcg caccatgaac ctattctcaa
     2881 ccgcaatctg gaggatgatt ttgctacgat aaagagaatt atcgcgtatc ggtgtcagca
     2941 ttcattggag tggatgctga aaaaccaggt gttactccct ctacttacac ttaaacctct
     3001 ctaaaaatat aagtaagtac tatcgagggc tatcatgaac tatggtgccc tctgagcata
     3061 gctacccatt acttcttcta tgtcattgaa taattcattt cttaactcta agtattctag
     3121 taactccatt tctaatgact ctgtcgtgaa cttaaatcta gaaggatctt tgattgagtt
     3181 tactagtctt gataacgctc tatatgtttt gagtgaaggt tgcattatag atggaaagta
     3241 tttgaaaacc tcttcatctc tgttgaaatt aactaaaaac ttgtagtcat catttataaa
     3301 tctcaagcat acagcgtcaa gcttatcgcc ttttcttatt attatttctt tataggaaag
     3361 atatttttca gaagataagt cccacatcaa gcgaaaatct ctctttgcga acgagttcgc
     3421 gtcatcattg aaaagagatg atgtgatggc tttggataga ccttctgtgt ttatctcttt
     3481 gttggatggg tagtaaattt tattaattgc tttcattctc tcaaatgatg aatataggtc
     3541 attatgccac cttgttgaaa tcactccttt agttatattc tccttgctaa aattaagccc
     3601 tgtatcaaaa ataaatgcag ccatcagtga atatgatatg ttttttatta actcagactt
     3661 aaatggttcc gctatggagt agtacagtga taaaataact aaaaataaaa ggtattgtct
     3721 tacctttccc gatgagtata tgtaaaggcg atatttattt attgatagtt ttattttgta
     3781 tggaatgatc tcatttctgt catatcctct tcgtggtgga gcaaaacaaa agaaacatgc
     3841 agctattaat aaaacaaaaa agatgaacag tgtaagcaag ttcggctcct gtgtatgctc
     3901 actatgcatg attgtcttga gatctaacga tcctgaaggt agtcttgtcc gtaaacgaaa
     3961 aaaccgccca gcaaggcggc ttttcgaagg ttctcagagc agcaactctt tgaaccaagg
     4021 taactggctt ggaggagcac agccaccaaa tctgtccttt cagtttagcc ttaaccggcg
     4081 cataacttca agactaactc ctctaaacgg ttaccaatgg ctgctgccag tggcgttttt
     4141 acgtgtcttt ccgggttgga ctcaagacga tagttaccgg ataaggcgca gcggtcgggc
     4201 tgaacggggg gttcgtgcac acagcccagc ttggagcgaa cgacctacac cgggccgaga
     4261 taccaacagc gtgagctatg agaaagcgcc acgcttcccg aagggagaaa ggcggacagg
     4321 tatccggtaa gcggcagggt cggaacagga gagcgcacga gggagcttcc agggggaaac
     4381 gcctggtatc tttatagtcc tgtcgggttt cgccacctct gacttgagca tctgtttttg
     4441 tgatgctcgt caggggggcg gagcctatgg aaaaacgcca gcggcgcggc cttcttcctg
     4501 ttcctggcct tttgctcaca tgtttctttt ggcgttatcc cctgattctg tggataaccg
     4561 catcaccgtc tttgagtgag ctgataccgc tcg
//
