LOCUS       NZ_CP029584             2044 bp    DNA     circular CON 26-NOV-2023
DEFINITION  Klebsiella pneumoniae strain DA33140 plasmid pDA33140-2, complete
            sequence.
ACCESSION   NZ_CP029584
VERSION     NZ_CP029584.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09245749
            Assembly: GCF_003181055.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2044)
  AUTHORS   Nicoloff,H., Hjort,K. and Andersson,D.I.
  TITLE     High prevalence of unstable heteroresistance caused by gene
            amplification in clinical bacterial isolates
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2044)
  AUTHORS   Nicoloff,H., Hjort,K. and Andersson,D.I.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-MAY-2018) Department of Medical Biochemistry and
            Microbiology, Uppsala University, Husargatan 3, Uppsala 75442,
            Sweden
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: CLC Genomics workbench v. 11.0.1
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 20.0x
            Sequencing Technology             :: PacBio; Illumina MiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/26/2023 01:17:51
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,534
            CDSs (total)                      :: 5,410
            Genes (coding)                    :: 5,298
            CDSs (with protein)               :: 5,298
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 112
            CDSs (without protein)            :: 112
            Pseudo Genes (ambiguous residues) :: 0 of 112
            Pseudo Genes (frameshifted)       :: 49 of 112
            Pseudo Genes (incomplete)         :: 64 of 112
            Pseudo Genes (internal stop)      :: 19 of 112
            Pseudo Genes (multiple problems)  :: 16 of 112
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP029584.1.
            Bacteria and source DNA available from Dan I Andersson.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2044
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="DA33140"
                     /serotype="ST147"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="pDA33140-2"
                     /geo_loc_name="Sweden"
     gene            921..1262
                     /locus_tag="DLJ83_RS27725"
                     /old_locus_tag="DLJ83_27725"
     CDS             921..1262
                     /locus_tag="DLJ83_RS27725"
                     /old_locus_tag="DLJ83_27725"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_039819495.1"
                     /translation="MPLKGNGNKFINNGIGVHNEAQVSVELNDSTFENNKIGYLEGKLD
                     RIDELFKNETPELAKKELIEELSKAIKRGESEKAESIFEKFDFHKWIASGANIAKIVES
                     LASAMNIHS"
                     /name="hypothetical protein"
ORIGIN
        1 gcatgaacga tacagtgagg aacgcttttt ttgtcacgat ctccccttaa cctgcgtaaa
       61 tcacccgcca tggttgatta tttttcaacc tcaaaatggt catacaccta acgcagccgc
      121 gattttcatc gcaactgcat gaattaaaag aaaaaaaagg aaaattccgt tttcacgagt
      181 aatacccagg tattaaaaat ccactgtaat tacatgaaaa taaagaaata aagagtaata
      241 ccggggtatt actggccacg gataaatttc ggcatgttca gggctgactt ttgttgtttg
      301 ttcacgttca gactccgtgt gacagtgctt atctcagcaa ggcagatatg acgcttcctc
      361 gcactgacag actccgctag tcagtactgc ggcgagcgtt gtcagcttag gtttggaaag
      421 gatggttttg atgtagatgc tttaaatgta caaaagcccc gtgacagaat cacagggctt
      481 cggtactcta attcttgcag atacctgcca agatcagacg tagcaatcaa atcttagcag
      541 ggctggctag tcatgtcact accagcttaa taccattcaa cgacattaaa atcatatctg
      601 caccttagac gctcaggtct acgccccgga ctccggcagg ataaacaggc aaattggtgg
      661 gaacgtaact taaccgcgaa agagttaggc tctaccccgt ctcgctgtac gataacaagc
      721 acctgataaa atgagcgacg aaggcagtag taagcggtgg cgtgtgattg caagaaagtc
      781 gaacacgaca cccacacaat caagcccttg caaggtgaga cacacaagaa aagagcttga
      841 cgaaggtcgc tacgctcccc gtggtcttat atacccacca cgggggcatt aggctaactt
      901 taaccaaaac tggaggaact atgccgctaa aaggtaatgg aaataaattc attaacaacg
      961 gtatcggcgt tcacaacgaa gcccaagtca gtgtggagct taatgattct acttttgaaa
     1021 ataataaaat agggtactta gagggtaagc tcgatcgcat agatgaactc ttcaaaaatg
     1081 aaacgccgga actcgctaaa aaagagttaa tagaagagct tagcaaggct ataaagcgtg
     1141 gggagtcaga aaaagcagag tctattttcg aaaaattcga ctttcacaag tggatagcct
     1201 ctggcgctaa cattgcaaag atcgttgagt cgctagcgtc tgctatgaac attcattcgt
     1261 aacctttgta aatatactcg aaccaaatac gccacaatac tcatattgaa atgcccgtca
     1321 ggtaactttg ctttctgagc ctgacggatt tcacgatcgt tgatatgcag gcccactcca
     1381 caattaatgg cctcattacc agacatataa acatcagctg acgaatctat actgtaccca
     1441 atgccgcagc tttcagctgt gcaattaatt attgaaatca tacccccccc cccacattgt
     1501 ctttctgaat ttaccataac gtctcattgc gcgcacccct cagacgggct gtgcgcgatt
     1561 ttcccgcctg aacctcaaaa ccgcatgtct taccccctga aaacggctca gaatggcgct
     1621 gatgatttct gaggctgtga atcgttatgc agccggctgc ctggcatcag gtttcggcct
     1681 gaattcaaac ccaaccccaa aaaagagtat ctttcgcctt gcctaaaacg gtgaacgggc
     1741 gggcaattta ttgcgtaact gtgagacctt gccggcgcag ccggaaaacc cgctgtcagc
     1801 acgttcagga agggggtgat gtacaaatgg cacagaggat gaaactgacg taaaagtgac
     1861 gtatgaactt aaggagtgat gtaaaaatga cgcaaaagtg acgtataagc tgaaggagag
     1921 atgtaattct gtagtcttat accaggtgaa tgcctgtcca gcatcagctt ctgtagttta
     1981 tctgtagtct catcttagct tttgtagtct atctgtagtc ggggaggata acccgttcat
     2041 gcct
//
