LOCUS       NZ_CP029394             3063 bp    DNA     circular CON 08-JAN-2024
DEFINITION  Acinetobacter defluvii strain WCHA30 plasmid p6_010030, complete
            sequence.
ACCESSION   NZ_CP029394
VERSION     NZ_CP029394.2
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05356262
            Assembly: GCF_001704615.3
KEYWORDS    RefSeq.
SOURCE      Acinetobacter defluvii
  ORGANISM  Acinetobacter defluvii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 3063)
  AUTHORS   Hu,Y., Qin,J., Feng,Y. and Zong,Z.
  TITLE     The complete genome of Acinetobacter defluvii strain WCHAD010030
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3063)
  AUTHORS   Hu,Y., Qin,J., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-AUG-2019) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
  REMARK    Sequence update by submitter
REFERENCE   3  (bases 1 to 3063)
  AUTHORS   Hu,Y., Qin,J., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-MAY-2018) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
REFERENCE   4  (bases 1 to 3063)
  AUTHORS   Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-JUL-2016) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.5
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 200.0x
            Sequencing Technology             :: Illumina HiSeq; MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/08/2024 05:24:05
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,719
            CDSs (total)                      :: 3,616
            Genes (coding)                    :: 3,531
            CDSs (with protein)               :: 3,531
            Genes (RNA)                       :: 103
            rRNAs                             :: 7, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 78
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 85
            CDSs (without protein)            :: 85
            Pseudo Genes (ambiguous residues) :: 0 of 85
            Pseudo Genes (frameshifted)       :: 34 of 85
            Pseudo Genes (incomplete)         :: 54 of 85
            Pseudo Genes (internal stop)      :: 27 of 85
            Pseudo Genes (multiple problems)  :: 24 of 85
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP029394.2.
            On Aug 26, 2019 this sequence version replaced NZ_CP029394.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3063
                     /organism="Acinetobacter defluvii"
                     /mol_type="genomic DNA"
                     /strain="WCHA30"
                     /isolation_source="sewage"
                     /type_material="type strain of Acinetobacter defluvii"
                     /db_xref="taxon:1871111"
                     /plasmid="p6_010030"
                     /geo_loc_name="China: Chengdu, Sichuan"
                     /collection_date="2015-10-31"
     gene            join(2987..3063,1..112)
                     /locus_tag="DJ533_RS00610"
                     /old_locus_tag="DJ533_00615"
     CDS             join(2987..3063,1..112)
                     /locus_tag="DJ533_RS00610"
                     /old_locus_tag="DJ533_00615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005080189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_228716445.1"
                     /translation="MFEKKITQFEREVLLQEKIEQLENELKEFSDLQKKVYSDRLQKSI
                     VGLENRIQRIKKSLYTN"
                     /name="hypothetical protein"
     gene            263..1396
                     /gene="mobV"
                     /locus_tag="DJ533_RS00615"
                     /old_locus_tag="DJ533_00620"
     CDS             263..1396
                     /gene="mobV"
                     /locus_tag="DJ533_RS00615"
                     /old_locus_tag="DJ533_00620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005080191.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobV family relaxase"
                     /protein_id="WP_065995602.1"
                     /translation="MSFAILRLQKLKSFADVGGSLSHNYRNRETLNADDARTHLNEHEL
                     DTNEKCMTAIRDRIPEKRRKDAVLCIEHLITASPEWDGWGTEKETAFFEQSKKWLENKY
                     GKNNVVSTTIHRDETTPHLVAYVVPVDEETGRLNAKKFIGGSRHTLSQMQTDFAVEVKD
                     LGLDRGVQGSKAKHTSIKEYYEKLNNYENEPGIEKGLTYEVPEPEFFESKNAYGERVAN
                     AMIDQIFDQIAPRFDRANALASQTEKLKKELSDTKKTLYEVQQRAKPYLDIINKYNHPN
                     LENEFNKQVFKLEQNFDRQLEYHQFVKRQEEQERFNQQRELREQLRLEQEQKKQLAEQE
                     KREQQHLAYLRRQELEKQRKNEPKNDNGNDYDSPTPF"
                     /name="mobV"
     gene            1650..1772
                     /locus_tag="DJ533_RS19040"
     CDS             1650..1772
                     /locus_tag="DJ533_RS19040"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_267285732.1"
                     /translation="MSTSEVLMLLLLKKHEHSECIIKAFAFAFALETTRAKRVP"
                     /name="hypothetical protein"
     gene            2046..2987
                     /locus_tag="DJ533_RS00620"
                     /old_locus_tag="DJ533_00610"
     CDS             2046..2987
                     /locus_tag="DJ533_RS00620"
                     /old_locus_tag="DJ533_00610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005080187.1"
                     /GO_function="GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_065995604.1"
                     /translation="MNLDIKKHYPKDWIVLQNRVVECYRSMSLDEKRLFIMATPLARTT
                     KISSNDPIFISSSDFSKECGINLSTAYTALESATDRLFTRFFGYTNTEGNRVRIRWLNK
                     VIYLKNQGGTELYFTDEVLLLLREFDALNPYTKYKKEVVLRLKKDYSLDLYHLAKKHQT
                     MGGFQISLDELFEQLGLPESYRTRMNNLKSRVIDPSLDEITANTDIDLSYENVKRGRSV
                     VGFQFTVKEKPKPKVIETGRDPNTPDLFHKMTESQLDTFSSKLSELPEVQTMAHAGEDM
                     KPFIARIRSMLKDPEKQKTLLPHLAKLGFKSK"
                     /name="replication initiation protein"
     Typing          2047..2985
                     /name="rep_cluster_1223"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.123"
                     /coverage="99.0"
                     /evalue="0.0"
     Typing          234..1393
                     /name="MOBV"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.742"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 taaagaattt tctgatcttc aaaaaaaagt atatagcgat cgtctgcaga aaagcattgt
       61 cggtttagaa aaccgaattc agcgcatcaa gaaatcgctt tatacaaact gaaagtttgt
      121 cggggtcgag gggaggattc ccctcgctca tgaactttta aaacaccata aggggtttta
      181 aaagtggagt gagtccactt cgctatcgca aagctcaaaa acctctgcta tcgtgtgctt
      241 tttgcggtct tggattcctc aaatgtcatt tgctattttg cgccttcaga aattgaaatc
      301 gtttgccgat gttgggggca gtctttcgca taattatcgc aatcgagaaa cgttaaatgc
      361 cgatgatgcc cgtacacatt tgaatgagca tgagctggat acaaatgaaa aatgtatgac
      421 cgctattcgt gatcgtattc ctgaaaaaag acgtaaagat gcggttttat gtattgaaca
      481 tttgattaca gcgagtccgg agtgggatgg ttggggaact gaaaaagaaa ctgcattttt
      541 tgagcaatct aaaaaatggc tcgaaaataa atacggtaaa aataatgttg tcagcaccac
      601 gattcataga gatgaaacaa cgccccattt agttgcctat gtcgttccag tggacgaaga
      661 aacaggacga ttgaatgcta aaaaatttat tggcggatct cggcacacgc tttcacagat
      721 gcagactgat tttgcagttg aagtaaaaga tttaggatta gatcggggcg tacaagggag
      781 taaagcaaaa catacgtcta tcaaagaata ttatgagaaa ttgaacaatt acgaaaatga
      841 acctggtatt gaaaaaggac tcacatatga agtacctgaa cctgaatttt ttgaatctaa
      901 gaatgcttac ggtgagagag ttgcaaacgc tatgattgat cagatatttg atcaaattgc
      961 accacgattt gaccgagcga atgcactggc tagtcaaact gaaaaattaa aaaaagaact
     1021 gtctgatacc aaaaaaacac tctatgaggt tcagcaaaga gcaaaaccgt atttagatat
     1081 aattaacaaa tacaatcatc caaatcttga gaacgaattt aataagcagg tgtttaaatt
     1141 agaacaaaat tttgatagac aacttgaata tcatcagttt gtaaaaagac aagaagaaca
     1201 agaaagattc aatcaacagc gtgaattgag agagcaatta cgcttagaac aagaacagaa
     1261 aaagcaactt gctgaacaag aaaagcgaga gcagcagcac ttggcatatt taagacgtca
     1321 agaattagaa aaacagcgta aaaatgagcc aaaaaatgac aatggcaatg attacgactc
     1381 accaacacca ttttaaaacg ctctagaacg caaaaaaatg ggggttatag cgatgtttct
     1441 tgttttaagc ataaaactat agttgaaata aataaaacgc cttagaacgc aaatggtgag
     1501 tatttagcga gtgtctacga gcgacacaat gaaaattcgc ttattccccc tctgaaaaac
     1561 cgcttttgct ttttaaaata ggtgaatcgt agatgtagca atgctttcaa cgctatatct
     1621 atacgtttat cgacccaagg agttagcgag tgtctacgag cgaagtattg atgcttttgc
     1681 tcttaaaaaa gcatgagcat agcgaatgca ttatcaaagc ttttgctttt gcttttgctc
     1741 ttgaaacgac acgagcgaag cgagtgccat agcctttgat tttgcctttg attctctttt
     1801 ttagctttta aaaagctttt aaaagctttt cgcccctcta caagccttga tagatatagc
     1861 tttcagactt taaaaagcta caaacgccaa gtattaagct acaaacgcca agttaaaatc
     1921 actcataaag ctacaaacgc caagttataa agctacaaac gccaagtatt aagctacaaa
     1981 tatttattga cagcataata gtaaaaagct acatttttta aaaatgtagc ttaatgagat
     2041 ataaaatgaa tttagatata aaaaaacact acccaaaaga ctggattgtt ttacaaaata
     2101 gagttgtgga gtgttatcgg agtatgtcac ttgatgaaaa acgcttgttt atcatggcta
     2161 cgcctttagc aagaaccacc aaaatatcaa gcaacgaccc tatttttata tcatcgagcg
     2221 acttttcaaa ggaatgtggc attaacttat caacggctta tacggcttta gaatcagcca
     2281 ctgataggct ttttactcgt ttttttggct ataccaatac tgaaggtaat cgagtaagaa
     2341 ttagatggct aaacaaagta atctatttaa aaaatcaggg tgggacagag ctatatttta
     2401 cagatgaagt attgctgcta cttagagaat ttgatgccct aaacccttat accaaatata
     2461 aaaaagaggt cgtcctaaga ctaaaaaaag actattcgct agacctatat catttagcca
     2521 agaaacacca aacaatgggt ggttttcaaa ttagcttaga tgaattattt gaacaattgg
     2581 gcttgcctga atcgtataga acaagaatga ataatttaaa aagtcgtgta attgatccgt
     2641 cattggatga gatcaccgca aatacagata tagacctaag ctatgaaaat gtgaaacgtg
     2701 ggcgttccgt agttggcttt cagttcactg tcaaagaaaa accaaagccc aaagttatag
     2761 aaacaggacg agatccaaat acacctgacc tattccacaa aatgacagaa tctcaacttg
     2821 atacgtttag cagtaaactt tcagaactcc ctgaagttca aacgatggca catgcaggcg
     2881 aagacatgaa accatttatt gctcgtattc gttcgatgct caaagatcct gaaaaacaaa
     2941 aaacgttgct tcctcattta gcaaaattag gatttaaatc gaaataatgt ttgagaaaaa
     3001 aatcactcag tttgaaaggg aagttttgct acaagaaaaa attgagcagc tcgaaaacga
     3061 gct
//
