LOCUS       NZ_CP029393             4700 bp    DNA     circular CON 08-JAN-2024
DEFINITION  Acinetobacter defluvii strain WCHA30 plasmid p5_010030, complete
            sequence.
ACCESSION   NZ_CP029393
VERSION     NZ_CP029393.2
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05356262
            Assembly: GCF_001704615.3
KEYWORDS    RefSeq.
SOURCE      Acinetobacter defluvii
  ORGANISM  Acinetobacter defluvii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 4700)
  AUTHORS   Hu,Y., Qin,J., Feng,Y. and Zong,Z.
  TITLE     The complete genome of Acinetobacter defluvii strain WCHAD010030
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4700)
  AUTHORS   Hu,Y., Qin,J., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-AUG-2019) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
  REMARK    Sequence update by submitter
REFERENCE   3  (bases 1 to 4700)
  AUTHORS   Hu,Y., Qin,J., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-MAY-2018) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
REFERENCE   4  (bases 1 to 4700)
  AUTHORS   Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-JUL-2016) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.5
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 200.0x
            Sequencing Technology             :: Illumina HiSeq; MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/08/2024 05:24:05
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,719
            CDSs (total)                      :: 3,616
            Genes (coding)                    :: 3,531
            CDSs (with protein)               :: 3,531
            Genes (RNA)                       :: 103
            rRNAs                             :: 7, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 78
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 85
            CDSs (without protein)            :: 85
            Pseudo Genes (ambiguous residues) :: 0 of 85
            Pseudo Genes (frameshifted)       :: 34 of 85
            Pseudo Genes (incomplete)         :: 54 of 85
            Pseudo Genes (internal stop)      :: 27 of 85
            Pseudo Genes (multiple problems)  :: 24 of 85
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP029393.2.
            On Aug 26, 2019 this sequence version replaced NZ_CP029393.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4700
                     /organism="Acinetobacter defluvii"
                     /mol_type="genomic DNA"
                     /strain="WCHA30"
                     /isolation_source="sewage"
                     /type_material="type strain of Acinetobacter defluvii"
                     /db_xref="taxon:1871111"
                     /plasmid="p5_010030"
                     /geo_loc_name="China: Chengdu, Sichuan"
                     /collection_date="2015-10-31"
     gene            complement(join(3457..4700,1..385))
                     /locus_tag="DJ533_RS18830"
     CDS             complement(join(3457..4700,1..385))
                     /locus_tag="DJ533_RS18830"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphodiester glycosidase family protein"
                     /protein_id="WP_228199557.1"
                     /translation="MKKLFALSLLVSSTSIFAALPPFTPQNLEGFKGIQRDSMSRLRVN
                     LTVSSNNDAGEINISNFTLCSATACWKADVNKYIPVVNSSTTRGHLVADVLIPKNEQIR
                     EVFFEPTTGKQSIEGDLKFKEAVKIDPEYQGQNLYIVLDKTNKGNGVFRYFPVASTSLP
                     FNPELKYYLIDPKFNQSINLNSKSTITFPSKFLAQPQLFTIAEHNVGKKFPMLDIYPYI
                     KGSNNLKIKLAEVNKGANTNTANQIAKSLNFSEIDSTETRLIEGSDTPSSAAQKVSMAA
                     AAATCASTITSNLASYRSLVTSTGVVKISACETIAPNIHIAFINLKDSRVKYDIPVSVA
                     STATIPHTLNLRRITSYTSGIALVNGFTWDGDKGYPNGGQGTAKGFLNTTNIVRARNTD
                     AAPNLTNKLIFGVSSAKALSFFETGSTSYNFGSYGYNLTSSSTSVVKNGVCATSTETDR
                     WSAIGANPANGEVVMVSSTSAGSTNAAALCSVFKAFGINNALRLDGGPSAAMVISGVHL
                     NPLVGGANVLYGSSRHIAYPLRVGN"
                     /name="phosphodiester glycosidase family protein"
     gene            complement(467..1966)
                     /locus_tag="DJ533_RS00595"
                     /old_locus_tag="DJ533_00600"
     CDS             complement(467..1966)
                     /locus_tag="DJ533_RS00595"
                     /old_locus_tag="DJ533_00600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004917970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /protein_id="WP_065995593.1"
                     /translation="MIIKIHSRGAGSGRGPVDYLLGKDRDREDARLDRGDPEQMIQLID
                     STNFAQKYTSGVLSFAERDLDEHQKQQIMDSFERVLMPGMDKDQYSILWVQHQDKDRLE
                     LNFVVANVELQSGKRLQPYYDKADRPRLNAWKDLVNDHYKLHDPNDPLNKRELCTPNAL
                     PKHKQKASEIITDGLLSVAESGRIQNREDVIKTLESAGFEIARTTPKTISIKDPDGGKN
                     IRLKGMIYEQDFRFGKELRADIERASERYRASRSDRVQEARATLDRLVRRKCESNELRY
                     PRAEQTVTADYVKNLEYRSHSRDNSPFSDVGHPSLSELQNRQERRDYRSAELSYTGLSE
                     QRGQYQIERLHRQERSQTLMRFGEQGRRDLAEWQPNGSNGVLIDDRIRKALTRSLGTST
                     GATTAEGSRFTQDVREYQARESERQGSIQEAFREYQRNRSDPKRELEQISSASKQLELS
                     SARLQDTKQSLDRAITGIRNASQQVKEINQPKKSYGMRFGR"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(1947..2291)
                     /locus_tag="DJ533_RS00600"
                     /old_locus_tag="DJ533_00605"
     CDS             complement(1947..2291)
                     /locus_tag="DJ533_RS00600"
                     /old_locus_tag="DJ533_00605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004282283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_065995595.1"
                     /translation="MTKKEVFKRQKEIKIRLTDEEHQALLDRCTTASLASWMRETCLSE
                     KRTKQSKVIEVDPKLLRQLSGIGNNLNQIARLVNQQSKTSSAIDRIAIITALSGIEREL
                     QRLHNDHKNT"
                     /name="MobC family plasmid mobilization relaxosome protein"
     Typing          complement(471..1966)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 tttttactgc ttctttaaat tttaaatcac cttcaattga ctgtttacct gtagtcggtt
       61 caaagaaaac ttctctaatt tgttcattct ttggaattaa tacatctgct actaggtgcc
      121 ctctagtggt actactattt acaacgggta tatacttatt aacatcagct ttccaacaag
      181 cagttgctga acacaaagtg aaattagaaa tattaatctc tccagcatca ttattactag
      241 aaactgttag attaaccctc aaacgagaca tactatctct ttgaatacct ttaaatcctt
      301 ctaggttttg gggcgtaaac ggaggtaaag ctgcaaagat tgatgtcgat gatactagta
      361 aactcaatgc gaatagtttt ttcatttttt atcacttatt taattttagt cattaaatat
      421 taaagttttt atttaatatt tcctttaata aatgtaattt acattgttat ctgccaaatc
      481 tcattccata actcttttta ggctgattta tttctttaac ttgctgactt gcatttctaa
      541 tgcctgtaat tgctcgatca aggctttgtt ttgtatcttg aagtcttgca cttgaaagct
      601 caagttgctt acttgccgag ctaatttgtt caagctctcg tttcgggtct gatctgtttc
      661 gctgatactc tctaaaagct tcttgaatgc ttccctgacg ctctgactct cttgcttggt
      721 actctcgaac atcttgagta aatcggcttc cctctgctgt tgttgcgcct gtgcttgttc
      781 caaggcttcg agtaagtgct tttctaattc ggtcatcaat taatacccca ttggaaccat
      841 taggttgcca ttctgccaag tccctgcgtc cttgttcacc aaaacgcata agcgtttgcg
      901 atctttcttg tctatgcagt ctctcaattt gatattgccc cctttgttcg ctaagtcctg
      961 tatagctaag ttctgctgag cgataatctc tgcgttcttg ccgattttgt agctctgata
     1021 agctaggatg ccccacatca ctaaaagggc tgttatcacg gctatggcta cgatactcca
     1081 agtttttaac atagtcggca gtaaccgtct gttctgctct tggatagcgg agttcattgc
     1141 tttcgcattt tcttctaaca agtcgatcaa gcgttgctcg tgcttcttga actctgtcac
     1201 tacgacttgc tctgtatctt tcgcttgctc gttcgatatc tgctcgaagt tctttgccaa
     1261 atctaaaatc ttgctcatag atcattcctt taagacgaat atttttaccc ccatcagggt
     1321 ctttaatact gattgttttt ggcgtagttc tcgcaatctc aaagcctgcg gattcaagcg
     1381 ttttaatcac atcctcacgg ttttggatac gtccactttc agcaacgctt aaaagtccat
     1441 ctgtgatgat ttctgaggct ttttgcttat gctttggcaa agcattagga gtacataact
     1501 cacgcttatt tagagggtcg ttagggtcat gtagcttgta atgatcgttt actaggtctt
     1561 tccatgcgtt taaacgtgga cgatctgcct tgtcgtagta cggctgtaag cgtttaccgc
     1621 tttgaagctc cacatttgct acaacaaaat taagctctag gcggtcttta tcttggtgct
     1681 gcacccatag aattgagtat tgatctttat ccatacctgg catcaataca cgttcaaaac
     1741 tatccatgat ctgctgtttt tggtgttcgt ctaaatcacg ctctgcaaac gataaaacac
     1801 ccgatgtata tttttgagca aagttagtgc tgtcaattaa ttgaatcatt tgttcagggt
     1861 cgccacgatc tagccgtgca tcttcccgat ctcgatcttt accaagtaaa taatctacgg
     1921 gaccacgccc cgaacctgca ccacgactat gtatttttat gatcattgtg caatctctga
     1981 agctcccgct ctatacctga caaagctgta attattgcta tacgatctat ggctgaactt
     2041 gttttacttt gctgattaac caatctagca atctgattta ggttatttcc aatgcctgaa
     2101 agttgtctta ataattttgg gtctacttca atcactttgc tttgctttgt acgtttttca
     2161 cttaaacaag tttcacgcat ccaactcgca aggctagctg tagtacatcg gtctaaaaga
     2221 gcctgatgtt cttcatccgt taaacggatt ttgatttcct tttgtctttt gaaaacttct
     2281 tttttagtca tgcctaaatc agatcctcgg tttgtaaccg tccaaagaaa aaatctatga
     2341 tttttctctt tggacggttt tcgggggtgt cgggggtgaa gcccctgatc ccagtagcac
     2401 aaaagggacg aagtcccctt tgtgtatgct ggcttctaat cacaatagca tgttggttac
     2461 aggccggcaa gattcgctag aatattgact gcatgtgatc aaaggctatc tgtgattagt
     2521 tcggtattgg atgagtcgtt acaagattat ggacaatcgc aagcgaccgc cttttctgat
     2581 ctatgcataa acactatgca taactccgca taaatcacag atttatacgt tgagttacac
     2641 acaggtttaa tgcacaggaa aagtctttgc ccacaaccgt tattaactcc tttcagtaat
     2701 agttttttaa aataattatt cttaatatat aaaaaacaaa tgctctcaac ttctcaaccc
     2761 gcccccaaag cgtcgcactt cgtgctttgg ctttggtgaa cggttgagag agtttcggca
     2821 atactcaccc taagggcggt catttaaaaa aataacacat cccctaagta tcgccgattt
     2881 acctgtatat atttggcttc ggagccacgt atatcggtcg tatccgcaca tagctttgct
     2941 gactatgcag acaaggactc aaagtcttgc acttcgctcc acgcgctccc tgtcgttaca
     3001 ttgcctgtat ctctgcgagg gtttccccaa cgtacaactt aacaagtcct atgtaactac
     3061 tcccaacgct ccgcctatgt gaagttcccc tgtaagcggt ttagcctttc gactatagcc
     3121 atataacgcc agtgacactt attcctacca cacgttatac gtgtctattc aaaaaatggg
     3181 cgtacagaag tagacaaagc tcgacctatt ggtgcttatc tgatggttta gaaatcaaat
     3241 ttaacgaaag tttcaaattt ggggcttgtt taacagtagt atttctttaa aataagaact
     3301 ggtacataag ccgtaaggtg aatatcagta cgagtgccaa ctctgccgat cattcgttaa
     3361 atgatgctag taacatcaaa taactgtacc cctcgaattt aaatgaaaac ccctctaagt
     3421 tgcaagactt agaggggttt tttaatgaat tagtttttaa ttacctactc taagaggata
     3481 tgcaatgtgg cgactactac cataaagaac atttgctcct ccgaccaaag ggtttaaatg
     3541 aactccgcta atgaccatag cagcacttgg tccaccatca agtcttaaag cattattgat
     3601 accaaaggct ttaaagacag agcataatgc agcagcattg gtacttcctg ccgacgttga
     3661 agaaaccatt acaacttccc catttgcagg atttgcgcca attgcagacc aacggtctgt
     3721 ttctgtactt gtagcacata ccccattttt aaccactgaa gttgaactac ttgttaagtt
     3781 ataaccataa ctgccaaagt tataactggt acttcctgtc tcaaaaaaac ttaatgcctt
     3841 tgcagaactt actccaaaaa ttagtttatt agttaaattg ggggctgcat ctgtatttct
     3901 ggcccgtaca atattagtag tatttaggaa acctttagcc gtaccttgtc caccatttgg
     3961 atagccttta tctccatccc aggtaaaacc attcactaaa gcaattccag atgtataact
     4021 tgtgattcta cgtaaattta atgtatgagg tattgtagcc gtacttgcca ctgatacagg
     4081 tatatcgtac ttaacacgac tatcttttaa attgataaaa gcgatatgaa tgttaggtgc
     4141 aatagtttca catgctgaaa tctttaccac ccctgtactt gtcacaaggc ttcgataact
     4201 cgctaaatta gaggttattg tagatgcaca agttgcagca gccgcagcca tagagacttt
     4261 ttgcgcggca ctactgggag tatcagatcc ctcaattaaa cgagtttcag tagaatcgat
     4321 ttccgaaaaa tttaatgatt ttgctatctg attcgctgta ttagtattag cacctttatt
     4381 cacttcggct aacttaatct tgaggttatt acttcccttg atataaggat atatatcaag
     4441 cattggaaat ttcttaccta cgttatgctc agcaatagtg aatagttgag gttgagccaa
     4501 gaatttagat ggaaaagtaa tcgtactttt actattcaaa ttaattgact gattaaactt
     4561 tggatcaatt agataatatt ttagttcagg gttaaaaggt agcgaagtac tagctactgg
     4621 gaagtaacgg aataccccat ttcctttatt ggttttatct aaaacaatgt ataaattttg
     4681 tccttgatat tcaggatcaa
//
