LOCUS       NZ_CP029392             4761 bp    DNA     circular CON 08-JAN-2024
DEFINITION  Acinetobacter defluvii strain WCHA30 plasmid p4_010030, complete
            sequence.
ACCESSION   NZ_CP029392
VERSION     NZ_CP029392.2
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05356262
            Assembly: GCF_001704615.3
KEYWORDS    RefSeq.
SOURCE      Acinetobacter defluvii
  ORGANISM  Acinetobacter defluvii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 4761)
  AUTHORS   Hu,Y., Qin,J., Feng,Y. and Zong,Z.
  TITLE     The complete genome of Acinetobacter defluvii strain WCHAD010030
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4761)
  AUTHORS   Hu,Y., Qin,J., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-AUG-2019) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
  REMARK    Sequence update by submitter
REFERENCE   3  (bases 1 to 4761)
  AUTHORS   Hu,Y., Qin,J., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-MAY-2018) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
REFERENCE   4  (bases 1 to 4761)
  AUTHORS   Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-JUL-2016) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.5
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 200.0x
            Sequencing Technology             :: Illumina HiSeq; MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/08/2024 05:24:05
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,719
            CDSs (total)                      :: 3,616
            Genes (coding)                    :: 3,531
            CDSs (with protein)               :: 3,531
            Genes (RNA)                       :: 103
            rRNAs                             :: 7, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 78
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 85
            CDSs (without protein)            :: 85
            Pseudo Genes (ambiguous residues) :: 0 of 85
            Pseudo Genes (frameshifted)       :: 34 of 85
            Pseudo Genes (incomplete)         :: 54 of 85
            Pseudo Genes (internal stop)      :: 27 of 85
            Pseudo Genes (multiple problems)  :: 24 of 85
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP029392.2.
            On Aug 26, 2019 this sequence version replaced NZ_CP029392.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4761
                     /organism="Acinetobacter defluvii"
                     /mol_type="genomic DNA"
                     /strain="WCHA30"
                     /isolation_source="sewage"
                     /type_material="type strain of Acinetobacter defluvii"
                     /db_xref="taxon:1871111"
                     /plasmid="p4_010030"
                     /geo_loc_name="China: Chengdu, Sichuan"
                     /collection_date="2015-10-31"
     gene            join(4506..4761,1..668)
                     /gene="repM"
                     /locus_tag="DJ533_RS00555"
                     /old_locus_tag="DJ533_00575"
     CDS             join(4506..4761,1..668)
                     /gene="repM"
                     /locus_tag="DJ533_RS00555"
                     /old_locus_tag="DJ533_00575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004734284.1"
                     /GO_function="GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein RepM"
                     /protein_id="WP_004856439.1"
                     /translation="MKKELVVKDNALINASYNLDLSEQRLILLAILEARQSNTPNDKDL
                     TIHAESYINHFNVHRNTAYKVLKDACKSLFDRRFSYQKLTQKGNIENVISRWVQRISYV
                     ENEALVRIKFSDDVVPLITNLEKHFTSYELEQVSSLTSVYAIRLYELLIAWRSTGKVTM
                     VELEELRLKLGIEPNEYKRMGQFKEKVLHLAIDQINEYTDIKAEYEQHKRGRSIIGFSF
                     KFKQKSQPKKLDSKRDPNTPDFFVKMTDAQRHLFANKMSEMPEMGKYSQGTESYQQFAI
                     RIADMLLEPEKFRELYPILEKSGFQP"
                     /name="repM"
     gene            665..961
                     /locus_tag="DJ533_RS00560"
                     /old_locus_tag="DJ533_00570"
     CDS             665..961
                     /locus_tag="DJ533_RS00560"
                     /old_locus_tag="DJ533_00570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004856442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_004856442.1"
                     /translation="MIKLNNLSTDLKHVTVEYLDIVNYEIARENICGYIFLLSRISKNA
                     EPTKKMQMESKIQDLIYYRDNLQIEDKDNIQKVLNTLIPEYQAEQNNQTAKKN"
                     /name="hypothetical protein"
     gene            complement(958..1242)
                     /locus_tag="DJ533_RS00565"
                     /old_locus_tag="DJ533_00565"
     CDS             complement(958..1242)
                     /locus_tag="DJ533_RS00565"
                     /old_locus_tag="DJ533_00565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004871868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_004856445.1"
                     /translation="MTKSAENIEKKIEAQLEKLKQLKAQKQAIDAREKTKQKEQERKDD
                     TRRKILLGSYLIKKMQSNEANKEKILAELNEYLTENRDRQLFDLPDIEA"
                     /name="hypothetical protein"
     gene            1458..2411
                     /gene="mobQ"
                     /locus_tag="DJ533_RS00570"
                     /old_locus_tag="DJ533_00560"
     CDS             1458..2411
                     /gene="mobQ"
                     /locus_tag="DJ533_RS00570"
                     /old_locus_tag="DJ533_00560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017284732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobQ family relaxase"
                     /protein_id="WP_065995589.1"
                     /translation="MAIYHCTTKTVNRSSGRTAVASMAYRAGEKLTDERTGLTHDFTKK
                     EGVVYTEILSNLDTELDRSKVWNLAEKSENRKDARTAREWVIALPDELDEEQRKELARE
                     FAQSLVDRYGVVADLAIHAPSKGGDDKNHHAHILLTTRKAELDTENKLVLTQKSEIELS
                     NTKRKSLGMGTSQEEIKQIRATWANLANHALEYAGYRERIDHRSYADQGNQLQATIHEG
                     SKVTQMRRKGIDTEISRFNDTIKQQNSQQLQYKQQHKEQTLEQGFNRVEKGFEQWKKDQ
                     EAKRLELEHKKQLKLQQEQAMKLKQRKSMNRNGPSL"
                     /name="mobQ"
     gene            2408..2878
                     /locus_tag="DJ533_RS00575"
                     /old_locus_tag="DJ533_00555"
     CDS             2408..2878
                     /locus_tag="DJ533_RS00575"
                     /old_locus_tag="DJ533_00555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004811700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_065995588.1"
                     /translation="MSNQNDLDDQLYILLASMKEYREAIADDNKRLETFYNKVASGVLE
                     QSKKTLNNANQEATRALQGRIQELDKATDKLNYRFIALLCAIFLSLVLVFLSFIFLFIP
                     SFDEIQQRRAEAAWLEQSYNLDIKNCNGRACVRIMKNDCHGTNKDYCVIDPK"
                     /name="hypothetical protein"
     gene            3371..3796
                     /locus_tag="DJ533_RS00585"
                     /old_locus_tag="DJ533_00580"
     CDS             3371..3796
                     /locus_tag="DJ533_RS00585"
                     /old_locus_tag="DJ533_00580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005108788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6530 family protein"
                     /protein_id="WP_065995587.1"
                     /translation="MKKEIPTHLSHKPIVKLEGYSQFDGRFAGNTDAAGLSIGLAQWSD
                     SENMDLSAKVWRYTGEKWSRQSEELPIHRVFDLASLLCASMSYAKNDTLPICDDFKIDL
                     TKNSDLIDVLKGGMLKDQKHLDESLKRLSKYLKTLGY"
                     /name="DUF6530 family protein"
     Typing          4..659
                     /name="rep_cluster_1280"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="89.65"
                     /coverage="99.0"
                     /evalue="0.0"
     Typing          1459..2408
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="95.597"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 aaaagggcaa cattgagaat gtaataagtc gatgggtaca acgaatatct tatgtagaaa
       61 atgaagctct tgttcgtatt aagttttctg atgatgttgt accgttgatt acaaatttag
      121 aaaaacactt caccagttat gaactagagc aagtcagcag tttaactagt gtttacgcta
      181 tacgcttgta tgagttgctt atcgcatggc gtagtacagg caaagtgact atggtagagc
      241 tagaagagct aagattaaaa ttaggcatag aacccaacga atacaagaga atggggcaat
      301 ttaaagaaaa agttttacac cttgccattg atcaaattaa tgagtacaca gatataaaag
      361 cagagtatga acaacacaaa cgtggtcgtt caattattgg tttttcattt aagtttaagc
      421 aaaaatcaca gccgaaaaaa ttagattcta agcgtgaccc aaacacacct gacttttttg
      481 tcaaaatgac cgatgcacaa cgccatttat ttgccaataa aatgtcagaa atgcctgaaa
      541 tggggaaata ttcacaaggt acagaaagct accaacaatt tgctatccgt atagcagata
      601 tgcttttaga gcctgaaaaa ttcagagagc tttatccaat attagaaaaa tcaggatttc
      661 agccatgatt aaattaaaca acctatcaac tgatctaaaa catgtgaccg ttgaatacct
      721 cgacatcgta aattatgaaa ttgcgaggga aaatatatgc ggttatatct tcctattatc
      781 tcgaatatcc aaaaatgcag aacccaccaa aaaaatgcag atggaaagca aaatacagga
      841 cttaatttac tatcgagata atttgcagat agaggacaaa gacaatattc aaaaggtttt
      901 aaatacgctc attcccgagt atcaagccga acagaacaac caaacagcta agaaaaatta
      961 ggcttcaata tcgggcaaat caaaaagctg tctatctcta ttttctgtta aatattcgtt
     1021 gagttcagcg agtatttttt ctttattggc ttcattagat tgcatctttt taattaagta
     1081 agaaccgagc aaaattttac gtcttgtatc gtcctttctt tcttgttcct tttgcttggt
     1141 tttttctctt gcatcaatag cctgtttttg agcttttaac tgtttcaact tttctaattg
     1201 ggcttcaatt ttcttttcga tattttcagc agattttgtc ataacggtta atttcgggat
     1261 atagaaaacc actcaagcat aaaaccctat gaattgaaat tcaagcgggc tatatgctat
     1321 cgtgtttttc atgaaatgcg cacttacgac ttggatttca tccaagtcaa agtttgcgta
     1381 aggggatacc ccttaacccc aaaaaattgc tacgcaattt ttcaaaagca aaagcaaaac
     1441 catcacaagg ctaaggcatg gcaatttatc actgtacgac taagaccgtt aaccgaagtt
     1501 cgggacgaac tgcggttgcc tctatggctt atcgtgcagg ggaaaagttg acagatgaac
     1561 ggacaggatt aacgcacgac ttcacgaaaa aagaaggtgt agtgtataca gagattcttt
     1621 ctaacttgga tactgaatta gaccgaagca aagtgtggaa tctggcggaa aaatcagaaa
     1681 atcggaaaga tgcccgaacc gcacgtgaat gggtaattgc tctaccggac gagctggatg
     1741 aagaacagcg aaaagaacta gcaagagagt ttgcccaatc tttagtagac cgttatgggg
     1801 tggttgcaga tttagcgatt catgcaccta gcaaaggtgg agatgataaa aaccatcatg
     1861 cacatatctt actgacaact cgcaaagcag aattagatac tgaaaataaa ctggtcctca
     1921 ctcaaaaatc ggaaattgag ttaagtaaca ccaaaagaaa aagcttaggc atgggaacaa
     1981 gccaggaaga aattaaacag attcgagcca cctgggcaaa cttagccaat catgctctgg
     2041 aatatgcagg gtatcgggaa agaatcgacc accgcagtta tgccgatcaa ggtaatcagc
     2101 tacaggccac catacatgaa ggcagtaaag tcacccagat gcgcagaaag ggcatagata
     2161 ctgaaattag ccgtttcaac gacacgatca aacagcagaa cagtcaacag ctccaataca
     2221 aacaacagca caaggaacag accttagaac agggttttaa ccgtgttgaa aaaggctttg
     2281 agcaatggaa gaaagatcag gaagctaaac gcctagaact ggaacataaa aagcagttaa
     2341 agctacagca agaacaagcg atgaagctga aacaacgcaa aagcatgaat agaaatgggc
     2401 cttccctatg agcaatcaaa acgatttaga cgaccagtta tatattttat tagcctccat
     2461 gaaggaatac agggaagcca tagcagatga taacaagcga ttagagacgt tttacaacaa
     2521 ggtagctagt ggggtactag aacagagcaa aaagacccta aataacgcaa atcaggaagc
     2581 tacacgcgcc cttcaaggtc gtattcagga gttagataaa gccaccgata aattgaacta
     2641 cagatttatt gccttgttgt gtgcaatttt ccttagtctg gtattagttt tcctgtcttt
     2701 tatattttta tttattccaa gttttgatga aatccagcag cgtcgagcag aagcagcttg
     2761 gttagaacag agttacaacc tagatattaa aaattgtaat ggtagagctt gtgtacggat
     2821 catgaaaaat gactgtcacg gaacgaataa agattactgt gtgattgatc ctaaataatt
     2881 actggtaagt actttgctcg gttcttctct taatcttatc aataccggat gtcgcaaagt
     2941 ggctcgactt tgaaacatgg caaaagccat atttcaaagt gtcgagcttt acttttcatt
     3001 ttttatgtcc tatctatttg tcataaggaa gcatactttc atagcactaa tagtggactt
     3061 aataatgaga atgtatttga ttttcctgtc ttttataata atatttttta ttttaactct
     3121 agttgttaaa tccaataatg atcggaaaaa atttgaagta ttcaatgaaa tagagacaac
     3181 aaacaagttg atacaaaaaa aaccataatt tttttatggt ttttatattt tcaaatagtg
     3241 ttttagcaaa aataattaaa tttcgtataa ccgccattat gttaaataga agtcaaaata
     3301 gcactttact ttagtaaatt atttagtaac atgtttagta atatttttac tagaagtttt
     3361 actaaattat atgaaaaaag aaattccaac tcacttatca cataagccaa tcgttaaatt
     3421 agaaggttat tctcagtttg atggtcgatt tgcaggaaat actgatgctg caggcttatc
     3481 aattggatta gctcaatgga gtgattctga aaatatggat ttatcagcca aggtctggcg
     3541 atatacaggt gaaaaatggt ctagacagtc agaggagcta ccaattcata gagtatttga
     3601 tttagctagc cttttatgtg cttctatgag ttatgctaaa aatgatactt tgcctatatg
     3661 tgatgatttt aaaattgatc taacaaaaaa ctctgatctt attgatgttt taaaaggtgg
     3721 aatgttaaaa gatcaaaaac atttagatga atctctcaaa agattatcta aatatttaaa
     3781 gactcttggc tattaagcat ttctaaaatt aacataatac accttatacg aaatgcatta
     3841 taattatctt tagaaatcaa tgctgtagtt tctagtttat agctcatctt ccccaagatg
     3901 ggcttttttt atgatttttc acgttccacg cctattcttt gatcaatgtt tcacaacttt
     3961 gattagctcc attaaataat taaaacctag ataataagaa ccgagcgagt gtctacgagc
     4021 gattgagcat catcaaaatt tcacgctagc cttttctctg attacaagct ccctttcgat
     4081 tttaaacggt aggtacagag catcccgaat gggtgcgaac tttggagctt ttgcttttca
     4141 aaaagtatga gcgaagcgaa tacattacca atgcttttgc ttttagattt cataaacagg
     4201 attaaccaaa aactgcccca tgaagcgagg aacgagcttc aatagagtac gagctttagc
     4261 gagtacatag ggcagtttta agcactcccc tctttttaat attttttaat tttttaattt
     4321 ttagcctcta caattaattg atatataaga ataaaaatag caataagtac acctttatct
     4381 tgcaataagt acacctttat cttgcaataa gtacaccttt atcttgcaat aagtacacct
     4441 ttatcttgca aagtgacact caataaaata gagtgtactt atatatttaa aaaacatgtg
     4501 tgcttatgaa aaaggaacta gtcgttaaag ataatgcact aataaatgcc agttataatt
     4561 tagacctatc agaacaacgt ttaatactgt tagccatact tgaagctagg caatcaaata
     4621 cacccaatga taaagatttg acgattcatg ctgaaagcta tatcaaccat ttcaatgttc
     4681 atagaaatac agcctataaa gttcttaaag atgcttgcaa aagcctattt gatcgtagat
     4741 ttagctatca aaagctgact c
//
