LOCUS       NZ_CP029385             1934 bp    DNA     circular CON 08-JAN-2024
DEFINITION  Klebsiella pneumoniae subsp. pneumoniae strain SCKP040074 plasmid
            p1_040074, complete sequence.
ACCESSION   NZ_CP029385
VERSION     NZ_CP029385.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08027262
            Assembly: GCF_003037615.2
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae subsp. pneumoniae
  ORGANISM  Klebsiella pneumoniae subsp. pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 1934)
  AUTHORS   Tang,G., Feng,Y. and Zong,Z.
  TITLE     The complete genome of Klebsiella pneumoniae strain SCKP040074
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1934)
  AUTHORS   Tang,G., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-MAY-2018) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
REFERENCE   3  (bases 1 to 1934)
  AUTHORS   Liu,L., Lin,J., Tang,G., Yang,B., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAR-2018) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.5
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 200.0x
            Sequencing Technology             :: Illumina HiSeq; MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/08/2024 03:16:34
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,507
            CDSs (total)                      :: 5,384
            Genes (coding)                    :: 5,238
            CDSs (with protein)               :: 5,238
            Genes (RNA)                       :: 123
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 146
            CDSs (without protein)            :: 146
            Pseudo Genes (ambiguous residues) :: 0 of 146
            Pseudo Genes (frameshifted)       :: 54 of 146
            Pseudo Genes (incomplete)         :: 90 of 146
            Pseudo Genes (internal stop)      :: 24 of 146
            Pseudo Genes (multiple problems)  :: 18 of 146
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP029385.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1934
                     /organism="Klebsiella pneumoniae subsp. pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="SCKP040074"
                     /host="Homo sapiens"
                     /sub_species="pneumoniae"
                     /db_xref="taxon:72407"
                     /plasmid="p1_040074"
                     /geo_loc_name="China: Sichuan"
                     /collection_date="2017-06-14"
     gene            join(1470..1934,1..522)
                     /locus_tag="CVG30_RS00005"
                     /old_locus_tag="CVG30_00005"
     CDS             join(1470..1934,1..522)
                     /locus_tag="CVG30_RS00005"
                     /old_locus_tag="CVG30_00005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001529700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_016245711.1"
                     /translation="MQNPKLQNLTDYSPSDAPWDAHKSVSDDVGGIYLLAAEYERYGAR
                     MASCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDARWMFLTLTVRNCAIGELGETLNRMNMAFQRLKDRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPSMFTRDYVKHDRWVELWRECLRVNYDPNVDVRAVKPRKPKDGE
                     SLASATAELVRGAVAETLKYSTKPADMVADPEWFLELTKQTHKRRFVATGGALKDILKL
                     DQETDADMVIGDDIPEGDDDGSRIAFEWKTESKKYRRSPSKDKAESD"
                     /name="protein rep"
     Typing          complement(249..437)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.947"
                     /coverage="98.0"
                     /evalue="1.39e-59"
ORIGIN
        1 accacggaag ttacacgtgg aagtgacggt agtgcgcacc cgcactttca cactctgatg
       61 atggttcctc cctcaatgtt cacgcgagat tacgttaaac atgaccgctg ggtagagctt
      121 tggcgagagt gtttgcgtgt gaattacgat ccgaatgttg atgttcgagc agtaaaaccc
      181 cgcaagccta aggacggaga atcattggct tctgcaactg cggaacttgt acggggcgca
      241 gtggctgaaa ccctgaaata ttccacgaag ccggctgaca tggttgctga tcctgaatgg
      301 ttcctcgaat tgactaagca gacacataag cgccgatttg tggctaccgg tggcgcactc
      361 aaagacatac tgaaactcga tcaggaaact gatgccgata tggtaatcgg ggatgatatt
      421 cccgaaggcg atgatgatgg ttcacgcatt gcttttgagt ggaaaaccga atccaaaaag
      481 taccgtcgct caccgtcaaa agataaagct gaatcagact gacagggtgt cggggcgcag
      541 ccctgaccac gacgtttttg agaggacgcc gcttgtcggc ggtactccaa aaacacatct
      601 tgtcctattg gttctactcc gatgcaggat agggctaacg ccgcaaagtg acgtcactca
      661 attactgagt tcggtttccg aactcagttg ggacaagatg tgtttttggt acaccgccat
      721 cacgatgtcg gtgccaaaaa cgattcgtca gggctgcgcc ccgacaccct gccaacacct
      781 cacgcagtca gattaaaatc tgccagcgct cgctgtttcc gaaatcgtca aactctaaat
      841 cgtggggtcc cgctggcttg ccagtgggtt ccgatttagt gattgacgac attgctgatt
      901 gaaaaattgg ctgaggtggt tggattcacg aagtgaggcc aaccacctgg aagacggttt
      961 ttaattgtct ggtaccggat acaaccagaa cgaatggagt tggttctgtc gtgatgcgaa
     1021 aaagtatggg ttcgcaaatc acagactaaa tagatttacc caattccatt cgagtgaggt
     1081 tgttatgttt tttgaggttc ttaatcatgt tgatagtgcg ttgagcgttg ctgtttcgct
     1141 cctggcgttg tggcagtttt tggtggcggg tgggcgttga atggctggtt cgatccgcgc
     1201 gcgatccttg tatttatact taagggataa ctctggcgat aaaaaatggc atcaagcctt
     1261 gcgtaccaag gcttcggggc ttatttgcgt tgtagaaggt tttggaagta ttctgttggg
     1321 agtggtcgcc ttaaaagcga cccccgcaac gacggccatc gttcgggggt gtgaccacct
     1381 gcagaaattc gattcgaagc gacaaccaac aggtgatacg gcaatgataa cacgtcaaat
     1441 gagccatcgc ccagcatggg acggtgtgca tgcaaaaccc taaactccag aacctcacgg
     1501 attactcccc ctcagacgcg ccctgggacg ctcacaaaag tgtttctgac gacgtaggtg
     1561 ggatttacct tctcgcagcc gaatatgagc gctacggggc gcgtatggct tcctgtggcg
     1621 gtttactgag gtttggttgg tctaccctca aagaaactgg agaaactcgc cttaggctac
     1681 gtgaggcgca tttctgtcgt gtccggcact gtcctgtctg ccagtggagg cgatccctga
     1741 tgtggcaagc ccgtttttat cagtccctgc cgcgtattgt tgcggattat ccagatgcac
     1801 gctggatgtt cctgaccctc acagtgcgaa actgcgcgat cggggaattg ggtgagacac
     1861 ttaaccgaat gaacatggcc ttccagcgac ttaaggatcg caaagagttt cgacctgttc
     1921 agggctggat ccgc
//
