LOCUS       NZ_CP029165             2495 bp    DNA     circular CON 01-DEC-2023
DEFINITION  Staphylococcus aureus strain SVH7513 plasmid pSVH7513b, complete
            sequence.
ACCESSION   NZ_CP029165
VERSION     NZ_CP029165.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08999370
            Assembly: GCF_003111725.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 2495)
  AUTHORS   Murphy,R.J.T., Bastholm,T.R., Crow,J.E., Ramsay,J.P. and Coombs,G.W.
  TITLE     Draft genome sequence of ST612 Staphylococcus aureus SVH7513
            isolated from an Australian horse
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2495)
  AUTHORS   Murphy,R.J.T., Bastholm,T.R., Crow,J.E., Ramsay,J.P. and Coombs,G.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-APR-2018) School of Biomedical Sciences, Curtin
            University, Kent Street, Bentley, WA 6102, Australia
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 01-MAR-2018
            Assembly Method                   :: Canu v. 1.6
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 616.0x
            Sequencing Technology             :: PacBio; Illumina MiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/01/2023 06:08:34
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,976
            CDSs (total)                      :: 2,894
            Genes (coding)                    :: 2,798
            CDSs (with protein)               :: 2,798
            Genes (RNA)                       :: 82
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 96
            CDSs (without protein)            :: 96
            Pseudo Genes (ambiguous residues) :: 0 of 96
            Pseudo Genes (frameshifted)       :: 60 of 96
            Pseudo Genes (incomplete)         :: 43 of 96
            Pseudo Genes (internal stop)      :: 11 of 96
            Pseudo Genes (multiple problems)  :: 17 of 96
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP029165.1.
            Bacteria and source DNA available from Dr Joshua Ramsay, Curtin
            University.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2495
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="SVH7513"
                     /isolation_source="Vet Hospital"
                     /host="Homo sapiens"
                     /db_xref="taxon:1280"
                     /plasmid="pSVH7513b"
                     /geo_loc_name="Australia: New South Wales"
                     /lat_lon="32.054 S 150.859 E"
                     /collection_date="2009"
     gene            1..477
                     /locus_tag="DD555_RS00005"
                     /old_locus_tag="DD555_00005"
     CDS             1..477
                     /locus_tag="DD555_RS00005"
                     /old_locus_tag="DD555_00005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000664727.1"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA];
                     GO:0006276 - plasmid maintenance [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="WP_000664727.1"
                     /translation="MKERYGTVYKGSQRLIDEESGEVIEVDKLYRKQTSGNFVKAYIVQ
                     LISMLDMIGGKKLKIVNYILDNVHLSNNTMIATTREIAKATGTSLQTVITTLKILEEGN
                     IIKRKTGVLMLNPELLMRGDDQKQKYLLLEFGNFEQEANEKQENALSDYYSFKD"
                     /name="replication/maintenance protein RepL"
     gene            1194..1253
                     /gene="ermCL"
                     /locus_tag="DD555_RS15615"
     CDS             1194..1253
                     /gene="ermCL"
                     /locus_tag="DD555_RS15615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002497446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA methylase leader peptide ErmCL"
                     /protein_id="WP_002497446.1"
                     /translation="MGIFSIFVISTVHYQPNKK"
                     /name="ermCL"
     gene            1314..2048
                     /gene="erm(C)"
                     /locus_tag="DD555_RS00015"
                     /old_locus_tag="DD555_00015"
     ARG             1315..2045
                     /name="erm(C)"
                     /gene="erm(C)"
                     /gene_name="23S rRNA (adenine(2058)-N(6))-methyltransferase
                     Erm(C)"
                     /tool="amrfinderplus"
                     /drug_class="LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN"
                     /identity="100.0"
                     /coverage="100.0"
     ARG             1315..2048
                     /name="ErmC"
                     /gene="ErmC"
                     /gene_name="Erm 23S ribosomal RNA methyltransferase"
                     /tool="rgi"
                     /drug_class="macrolide antibiotic; lincosamide antibiotic;
                     streptogramin antibiotic; streptogramin A antibiotic;
                     streptogramin B antibiotic"
                     /identity="99.59"
                     /coverage="100.0"
     Typing          2..487
                     /name="rep_cluster_1947"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.591"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 atgaaagaaa gatatggaac agtctataaa ggctctcaga ggctcataga cgaagaaagt
       61 ggagaagtca tagaggtaga caagttatac cgtaaacaaa cgtctggtaa cttcgtaaag
      121 gcatatatag tgcaattaat aagtatgtta gatatgattg gcggaaaaaa acttaaaatc
      181 gttaactata tcctagataa tgtccactta agtaacaata caatgatagc tacaacaaga
      241 gaaatagcaa aagctacagg aacaagtcta caaacagtaa taacaacact taaaatctta
      301 gaagaaggaa atattataaa aagaaaaact ggagtattaa tgttaaaccc tgaactacta
      361 atgagaggcg acgaccaaaa acaaaaatac ctcttactcg aatttgggaa ctttgagcaa
      421 gaggcaaatg aaaaacaaga aaatgcatta tctgattatt attctttcaa ggactagtat
      481 aacataaaat cgtctacaaa tagacaaaaa acctgcacgc ttaatgtaga tcaaaagctt
      541 aacgcaaatg aaatagattg acctcccaat aacaccacgt agttattggg aggtcaatct
      601 atgaaatgcg attaagcttt ttctaattca cataagcgtg caggtttaaa gtacataaaa
      661 aatataatga aaaaaagcat cattatacta acgttatacc atcattatac taacgttata
      721 ccaacattat actctcatta tactaattgc ttattccaat ttcctattgg ttggaaccaa
      781 caggcgttag tgtgttgttg agttggtact ttcatgggat taatcccatg aaacccccaa
      841 ccaactcgcc aaagctttgg ctaacacaca cgccattcca accaatagtt ttctcggcat
      901 aaagccatgc tctgacgctt aaatgcacta atgccttaaa aaaacattaa agtctaacac
      961 actagactta tttacttcgt aattaagtcg ttaaaccgtg tgctctacga ccaaaagtat
     1021 aaaaccttta agaactttct tttttcttgt aaaaaaagaa actagataaa tctctcatat
     1081 cttttattca ataatcgcat cagattgcag tataaattta acgatcactc atcatgttca
     1141 tatttatcag agctcgtgct ataattatac taattttata aggaggaaaa aatatgggca
     1201 tttttagtat ttttgtaatc agcacagttc attatcaacc aaacaaaaaa taagtggtta
     1261 taatgaatcg ttaataagca aaattcatta taaccaaatt aaagagggtt ataatgaacg
     1321 agaaaaatat aaaacacagt caaaacttta ttacttcaaa acataatata gataaaataa
     1381 tgacaaatat aagattaaat gaacatgata atatctttga aatcggctca ggaaaagggc
     1441 attttaccct tgaattagta cagaggtgta atttcgtaac tgccattgaa atagaccata
     1501 aattatgcaa aactacagaa aataaacttg ttgatcacga taatttccaa gttttaaaca
     1561 aggatatatt gcagtttaaa tttcctaaaa accaatccta taaaatattt ggtaatatac
     1621 cttataacat aagtacggat ataatacgca aaattgtttt tgatagtata gctgatgaga
     1681 tttatttaat cgtggaatac gggtttgcta aaagattatt aaatacaaaa cgctcattgg
     1741 cattattttt aatggcagaa gttgatattt ctatattaag tatggttcca agagaatatt
     1801 ttcatcctaa acctaaagtg aatagctcac ttatcagatt aaatagaaaa aaatcaagaa
     1861 tatcacacaa agataaacag aagtataatt atttcgttat gaaatgggtt aacaaagaat
     1921 acaagaaaat atttacaaaa aatcaattta acaattcctt aaaacatgca ggaattgacg
     1981 atttaaacaa tattagcttt gaacaattct tatctctttt caatagctat aaattattta
     2041 ataagtaagt taagggatgc agtttatgca tcccttaact tgtttttcgt gtacctattt
     2101 tttgtgaatc gattatgtct tttgcgcatt cacttctttt ctatataaat atgagcgaag
     2161 cgaataagcg tcggaaaagc agcaaaaagt ttcctttttg ctgttggagc atgggggttc
     2221 agggggtgca gtatctgacg tcaatgccga gcgaaagcga gccgaagggt agcatttacg
     2281 ttagataacc ccctgatatg ctccgacgct ttatatagaa aagaagattc aactaggtaa
     2341 aatcttaata taggttgaga tgataaggtt tataaggaat ttgtttgttc taatttttca
     2401 ctcattttgt tctaatttct tttaacaaat gttctttttt ttttagaaca gttatgatat
     2461 agttagaata gtttaaaata aggagtgaga aaaag
//
