LOCUS       NZ_CP029139             2058 bp    DNA     circular CON 26-NOV-2023
DEFINITION  Klebsiella pneumoniae strain AR376 plasmid unnamed4, complete
            sequence.
ACCESSION   NZ_CP029139
VERSION     NZ_CP029139.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07291519
            Assembly: GCF_003074015.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2058)
  AUTHORS   Benahmed,F.H., Lutgring,J.D., Yoo,B., Machado,M., Brown,A.,
            McAllister,G., Perry,A., Halpin,A.L., Vavikolanu,K., Ott,S.,
            Zhao,X., Tallon,L.J., Sadzewicz,L., Aluvathingal,J., Nadendla,S.,
            Voskania-kordi,A., Simonyan,V., Patel,J. and Shawar,R.M.
  TITLE     FDA/CDC Antimicrobial Resistant Isolate Bank Genome Sequencing
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2058)
  AUTHORS   Benahmed,F.H., Lutgring,J.D., Yoo,B., Machado,M., Brown,A.,
            McAllister,G., Perry,A., Halpin,A.L., Vavikolanu,K., Ott,S.,
            Zhao,X., Tallon,L.J., Sadzewicz,L., Aluvathingal,J., Nadendla,S.,
            Voskania-kordi,A., Simonyan,V., Patel,J. and Shawar,R.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-APR-2018) Center for Devices and Radiological Health,
            US Food and Drug Administration, 10903 New Hampshire Avenue, Silver
            Sring, MD 20993-0002, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: canu v. 1.4; SPAdes v. 3.6.0
            Genome Coverage                   :: 20.43x
            Sequencing Technology             :: Pacbio; Illumina
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/26/2023 01:29:49
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,560
            CDSs (total)                      :: 5,436
            Genes (coding)                    :: 5,278
            CDSs (with protein)               :: 5,278
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 158
            CDSs (without protein)            :: 158
            Pseudo Genes (ambiguous residues) :: 0 of 158
            Pseudo Genes (frameshifted)       :: 69 of 158
            Pseudo Genes (incomplete)         :: 96 of 158
            Pseudo Genes (internal stop)      :: 24 of 158
            Pseudo Genes (multiple problems)  :: 25 of 158
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP029139.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2058
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="AR376"
                     /db_xref="taxon:573"
                     /plasmid="unnamed4"
     gene            complement(7..996)
                     /locus_tag="CSC13_RS28690"
                     /old_locus_tag="CSC13_0001"
     CDS             complement(7..996)
                     /locus_tag="CSC13_RS28690"
                     /old_locus_tag="CSC13_0001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001529700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_040207214.1"
                     /translation="MQNPELQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MASCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDSRWMFLTLTVRNCAIEELGETLSRMNTAFQRLKDRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVRHERWVELWRECLRVSYDPNVDVRAVKPRKPKDG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPKWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVKKYRRSPTKDKTESD"
                     /name="protein rep"
     gene            complement(1320..1511)
                     /locus_tag="CSC13_RS28695"
                     /old_locus_tag="CSC13_0002"
     CDS             complement(1320..1511)
                     /locus_tag="CSC13_RS28695"
                     /old_locus_tag="CSC13_0002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020324555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_020324555.1"
                     /translation="MIVRLDNRLFEILDEMGAHVDREMFMAAYAQRKAEKENDPRHIRQ
                     RKLTRLAHDLMSESDPEL"
                     /name="hypothetical protein"
     Typing          90..281
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.446"
                     /coverage="100.0"
                     /evalue="2.86e-91"
ORIGIN
        1 accctgttag tctgattcgg ttttatcttt cgtcggcgaa cgccggtact ttttgacctc
       61 ggtcttccac tcgaacgcga tgcgggaacc gtcatcatcg ccctcggaaa tatcatcccc
      121 gatcaccatg tcggcgtcgg tttcctgatc gagtttcagc acgtctttga gtgcgccgcc
      181 ggtcgccaca aagcggcgct tgtgcgtctg gcgggtcagt tcgaggaacc atttaggatc
      241 ggccaccatg tcggccggct tcgtggaata tttcagggtt tcggccactg cgccgcgcac
      301 cagttcggcg gtcgcgcagg ccagcgattc gccgtccttc ggcttgcggg gtttcactgc
      361 ccggacatcg acattcggat cgtaactgac ccgcaggcac tcacgccaca gctcaaccca
      421 gcgttcatgc ctgacgtaac tcttcccgtt aagcatgccc ggcggaacca tcatcagggt
      481 gtggaagtgc gggtgtgcgc tgccgtcact gccgcgggtg acttccgtgg tgcgtatcca
      541 gccctgaact ggtcggaact ctttacggtc cttcagtcgc tggaaagccg tgttcatccg
      601 gctcagcgtc tcgcccagct cctcgatcgc gcagttgcgc acggtcaggg tcagaaacat
      661 ccagcgggaa tcggggtaat ccgccacgat acgcggcagg gactggtaga aacgggcttg
      721 ccacatcagg gagcgcctcc actggcagac aggacagtgc cggacacggc agaaatgcgc
      781 ctcacgcagc ctcaggcgcg tttctccggt ttctttgagg gtagaccacc caaacctcag
      841 taaaccgcca caggaggcca tacgcgcccc gtagcgctca tattcagccg caagcaggta
      901 aatccctccc acgtcgtcag aaacgcttct gtgagcgtcc cacggcgcat ctgaggggga
      961 gtagtcagtt aggttctgga gttcaggatt ttgcatgcac accgccccat gctgggcgat
     1021 ggctcatttg acgtgttatc attgccatat cacctgtgtt gtcgtgtcca aattcgaatt
     1081 cctacaggtg gtcacacccc cgaactgtta gcgcagttgc gggggtcgct tttttctgcg
     1141 accactcccg acagaatact tccaaaacca ttttcaggca aatcacactc aaacccttgc
     1201 ggcacaaggg ctggcggcgt tttttgacgc cagagttatc ccttaagtat aaatacaagg
     1261 atcgcgcgca cgagactccg gccattttct gaccgatttc cctcgcgcgc acgcgaggct
     1321 cacaattcag ggtccgattc tgacatcaaa tcatgagcca acctggtcag tttccgttga
     1381 cggatatgcc ggggatcatt ttctttttcg gccttccgct gcgcataggc cgccatgaac
     1441 atttcccgat ccacatgcgc acccatctca tcgagaatct caaacagccg gttatccagt
     1501 ctgacgatca tgcctacccc ctcaaaaaac gcttatcagg tggttgcgct cactgcgtga
     1561 tcacaaccac cccctgtaag tattttacgg gtgctgtcgt caatcactaa atcggaaccc
     1621 actggcaagc cagcgggacc ccgcgattta gcgtttgacg atttcgggaa cggcgaacgc
     1681 tgacagattt taatctggcg gcgtgaggtg ttggcagggt gtcggggcgc agccctgacg
     1741 gatcgttttt ggtaccggca tcgtgatggc ggtactccaa aaacacatct tgtccgttat
     1801 cagtttttgt ttttcgtggg cttgccccac cgcgcgtttc tcatcgccag atgagaaact
     1861 actaagcgcg ccttccggaa aattaccgga agaaaaaccc aggttcggaa tccgaactca
     1921 gtaatcgagt gacgtcactt tgcggcgtta gccctatcct gcatcggagt aaaatcaatc
     1981 ggacaagatg tgactttggt acaccgccac caaggtgacg gatgcccaaa gccctcatgg
     2041 tcagggcgca gccccgac
//
