LOCUS       NZ_CP029124             2692 bp    DNA     circular CON 08-FEB-2024
DEFINITION  Enterobacter hormaechei strain AR432 plasmid unnamed1, complete
            sequence.
ACCESSION   NZ_CP029124
VERSION     NZ_CP029124.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07291525
            Assembly: GCF_003073995.1
KEYWORDS    RefSeq.
SOURCE      Enterobacter hormaechei
  ORGANISM  Enterobacter hormaechei
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.
REFERENCE   1  (bases 1 to 2692)
  AUTHORS   Benahmed,F.H., Lutgring,J.D., Yoo,B., Machado,M., Brown,A.,
            McAllister,G., Perry,A., Halpin,A.L., Vavikolanu,K., Ott,S.,
            Zhao,X., Tallon,L.J., Sadzewicz,L., Aluvathingal,J., Nadendla,S.,
            Voskania-kordi,A., Simonyan,V., Patel,J. and Shawar,R.M.
  TITLE     FDA/CDC Antimicrobial Resistant Isolate Bank Genome Sequencing
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2692)
  AUTHORS   Benahmed,F.H., Lutgring,J.D., Yoo,B., Machado,M., Brown,A.,
            McAllister,G., Perry,A., Halpin,A.L., Vavikolanu,K., Ott,S.,
            Zhao,X., Tallon,L.J., Sadzewicz,L., Aluvathingal,J., Nadendla,S.,
            Voskania-kordi,A., Simonyan,V., Patel,J. and Shawar,R.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-APR-2018) Center for Devices and Radiological Health,
            US Food and Drug Administration, 10903 New Hampshire Avenue, Silver
            Sring, MD 20993-0002, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: SMRT v. 2.3.0; HGAP v. 3.0; SPAdes v. 3.6.0
            Genome Coverage                   :: 16.36x
            Sequencing Technology             :: Pacbio; Illumina
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 02/08/2024 02:01:13
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,689
            CDSs (total)                      :: 4,574
            Genes (coding)                    :: 4,498
            CDSs (with protein)               :: 4,498
            Genes (RNA)                       :: 115
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 76
            CDSs (without protein)            :: 76
            Pseudo Genes (ambiguous residues) :: 0 of 76
            Pseudo Genes (frameshifted)       :: 39 of 76
            Pseudo Genes (incomplete)         :: 42 of 76
            Pseudo Genes (internal stop)      :: 7 of 76
            Pseudo Genes (multiple problems)  :: 12 of 76
            Pseudo Genes (short protein)      :: 1 of 76
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP029124.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2692
                     /organism="Enterobacter hormaechei"
                     /mol_type="genomic DNA"
                     /strain="AR432"
                     /db_xref="taxon:158836"
                     /plasmid="unnamed1"
     gene            197..802
                     /locus_tag="CSC19_RS00005"
     CDS             197..802
                     /locus_tag="CSC19_RS00005"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_054623596.1"
                     /translation="MSFIKSLNKKNQTDQIEVTINVRLTQEEDHLLTLATQQSGYKRNE
                     LFYLLAKEYIFDDESLKEMAEESGAEFSEGLYQNCYVVNTNRVHHEEDDKFMISEGVAA
                     TFEDGYKEKMEQVKKGDLVFLYRSGEGIVAHGIASGDVLKKDHNGVPDKTYYQKLSGFV
                     RYEKPLTASEIQRILGRNVVFMHTLFSIRDGYKLLKKD"
                     /name="hypothetical protein"
     gene            1322..1648
                     /locus_tag="CSC19_RS00010"
                     /old_locus_tag="CSC19_0005"
     CDS             1322..1648
                     /locus_tag="CSC19_RS00010"
                     /old_locus_tag="CSC19_0005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001070513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_228288709.1"
                     /translation="MNQAALITIANELNHDQMRVLMALLAELDYENYIQVAQMDIAEAL
                     TMQKTNVSRAVKNLIDFGIILEGPKIGRSKTYRLNPQFGWKGTVSNHKKALKNGLSVIQ
                     GGRS"
                     /name="helix-turn-helix domain-containing protein"
     gene            complement(1671..2687)
                     /gene="mobV"
                     /locus_tag="CSC19_RS00015"
                     /old_locus_tag="CSC19_0006"
     CDS             complement(1671..2687)
                     /gene="mobV"
                     /locus_tag="CSC19_RS00015"
                     /old_locus_tag="CSC19_0006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000024818.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobV family relaxase"
                     /protein_id="WP_167593153.1"
                     /translation="MRSPDWLDVRQNEGVSMANYAIMRCKKLTGMGSVASALQHCYRER
                     ETPNADAERTPENYCSVSQSADEAMGKLRELLPEKRRKDAVLAVEYVMTASPEWWKEAT
                     PRQQAEFFAHSEQWLEKKYGKDRVVAAVVHRDEATPHLSAFVVPLTQDGRLSAKEFIGG
                     RSKMRDDQSTYAESVKKLGLERGIEGSRATHQTVQHYYQSINRGTRSQVSISPDALEPR
                     VLRKGIFTKDVEDQAAIAKRLSHAVNDGLAGTIAMASQSAQNAKRVRELQKTMDSQQKR
                     LQSVTEPFKGLSREQMTEILMMAQRFKQQNQEKEKQQRIEREKQRQTRSRGMGGMSR"
                     /name="mobV"
     Typing          complement(1675..2687)
                     /name="MOBV"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 tgcctccggc gggccactat caggatgata gtgtactcac tagactttgc tacgcaaaat
       61 cgttcgttaa attcaactta ataaaaatat atgacataaa gtcattgctt aaatcaaaga
      121 tgtgatcaat gcttctgttt caatgtagtg attcactatc attgattagt acattaactc
      181 tggtgaggaa agtaagatgt cattcataaa atcgctaaac aaaaaaaatc aaacagacca
      241 aatagaagtg acgattaacg ttaggttaac ccaagaagag gaccatttac tgacattagc
      301 aacccagcaa tctggttata aaaggaacga gctattctac ctcctagcaa aggaatacat
      361 ctttgatgat gaaagcttaa aggaaatggc tgaggagtct ggcgctgagt tttcagaagg
      421 cttataccaa aattgttatg tggttaacac taacagagtt catcatgaag aagatgataa
      481 gttcatgatt tcagagggcg tagcggcaac atttgaagat ggttataagg aaaaaatgga
      541 gcaggttaaa aaaggagatt tagtctttct ttatcgctcc ggcgaaggaa ttgttgcaca
      601 tggtatcgcc agtggtgatg ttttaaagaa agatcataat ggcgtgccag acaagaccta
      661 ctaccagaag ctatcaggct ttgttaggta cgaaaaacca ctaaccgcgt ctgagatcca
      721 gagaatactg gggagaaacg ttgtgtttat gcacacgcta tttagcatta gagatggcta
      781 taaactgctt aaaaaagatt aaacccagtc tacaggtggt tggcatcact ttgtgacacc
      841 aaccaccttc cggaagtgtt ttttacagtg catcgtcaag ggtaaatgaa ctcgctacgc
      901 tcgcccttga cgaaataaag ctccgaatat cgttttaaaa aatcaagaac cgctcgccgc
      961 agactcatga ccgaacgtag tgagcgaatg agcgaggaag cggaatttcc acgtcactta
     1021 cataggaacc ctaacactca gaacaggcat aaaagcacct gattttgccg atgtgtgatt
     1081 gtggagagta ataagataca gaaggggatg gctgggaagc cgcgccacaa gcggaaagtt
     1141 tttgacaata gttatctcta gagataactt agttatcttg agagataact attttttcct
     1201 gaatggagat ttttagatgc ggagaatcac gcaggtagac caaactacag gggaggaatt
     1261 aggtggtttt gtagcagtga ttcgtcctaa acaaaagtca tcattccaga ggcactttac
     1321 tatgaaccaa gccgcgctaa ttaccattgc caatgagcta aaccatgacc agatgcgtgt
     1381 gctgatggcc ttgctcgcag aactggatta cgagaactac atccaagttg cgcagatgga
     1441 tattgcggaa gcgctgacta tgcaaaaaac aaatgtcagt cgtgcggtaa aaaacctgat
     1501 tgatttcggg atcatactgg aaggtcctaa gataggacgg agcaaaactt atcgcttgaa
     1561 tccccagttc ggttggaaag gtactgtcag caaccacaaa aaagcactaa aaaacggcct
     1621 cagcgttata cagggcggta gaagctgatc tctggaatgt cgcatcaaaa ctaacgactc
     1681 ataccaccca tgccacgcga tcgcgtctgt cgctgttttt cacgttcaat acgctgctgt
     1741 ttttcctttt cctggttttg ctgcttaaac cgctgagcca tcatcaggat ttcggtcatc
     1801 tgctctctgg aaaggccctt aaaaggctct gtaacgctct gtaggcgttt ctgctgcgag
     1861 tccatagtct tctgtagctc gcgcactctt tttgcattct gcgcgctctg agaggccatg
     1921 gcgatggttc ctgcaaggcc atcgttcact gcgtgactta gacgtttggc tatggctgcc
     1981 tgatcttcca cgtctttggt gaaaattcct ttccgcaata cgcgcggctc cagcgcatct
     2041 ggcgagattg atacctggct acgggtgcca cggtttatcg attggtagta gtgctgaact
     2101 gtctgatgcg tggcacggct tccctcgatg ccgcgctcaa gacccaattt ttttactgat
     2161 tcagcgtagg tgctctgatc gtcacgcatc tttgaccgcc cgccaataaa ctctttcgcg
     2221 gacagccgtc catcctgcgt caatggcacc acgaacgctg acaaatgcgg ggtggcctcg
     2281 tcccggtgaa ctaccgcagc cacaacacga tccttcccgt atttcttctc cagccactgc
     2341 tcagaatggg cgaaaaactc cgcctgctgc cgcggtgtcg cttctttcca ccactcaggg
     2401 cttgccgtca taacgtactc aacagccagt accgcatctt tacggcgttt ttccggcaac
     2461 agctcccgca gctttcccat cgcctcatct gccgactgag acacagagca gtagttttct
     2521 ggtgtccgtt cagcgtcagc attcggcgtc tcacgctccc tgtagcagtg ctgcaaagcg
     2581 ctggccacac tgcccattcc cgtcagcttt ttgcagcgca ttatcgcgta attcgccatg
     2641 cttaccccct cgttctggcg tacatccagc cagtcggggg atcgcattgc ga
//
