LOCUS       NZ_CP028780             2442 bp    DNA     circular CON 09-JAN-2024
DEFINITION  Klebsiella pneumoniae subsp. pneumoniae strain SCKP020046 plasmid
            p2_020046, complete sequence.
ACCESSION   NZ_CP028780
VERSION     NZ_CP028780.2
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07609114
            Assembly: GCF_002852945.3
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae subsp. pneumoniae
  ORGANISM  Klebsiella pneumoniae subsp. pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2442)
  AUTHORS   Liu,L., Long,H., Feng,Y. and Zong,Z.
  TITLE     The complete genome of Klebsiella pneumoniae strain SCKP020046
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2442)
  AUTHORS   Liu,L., Long,H., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-AUG-2019) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
  REMARK    Sequence update by submitter
REFERENCE   3  (bases 1 to 2442)
  AUTHORS   Liu,L., Long,H., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
REFERENCE   4  (bases 1 to 2442)
  AUTHORS   Liu,L., Lu,Y., Lin,J., Yang,B., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2017) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.4
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 200.0x
            Sequencing Technology             :: Illumina HiSeq; MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/09/2024 08:51:41
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,617
            CDSs (total)                      :: 5,495
            Genes (coding)                    :: 5,362
            CDSs (with protein)               :: 5,362
            Genes (RNA)                       :: 122
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 133
            CDSs (without protein)            :: 133
            Pseudo Genes (ambiguous residues) :: 0 of 133
            Pseudo Genes (frameshifted)       :: 49 of 133
            Pseudo Genes (incomplete)         :: 82 of 133
            Pseudo Genes (internal stop)      :: 17 of 133
            Pseudo Genes (multiple problems)  :: 15 of 133
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP028780.2.
            On Aug 18, 2021 this sequence version replaced NZ_CP028780.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2442
                     /organism="Klebsiella pneumoniae subsp. pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="SCKP020046"
                     /host="Homo sapiens"
                     /sub_species="pneumoniae"
                     /db_xref="taxon:72407"
                     /plasmid="p2_020046"
                     /geo_loc_name="China: Yibin, Sichuan"
                     /collection_date="2016-11-03"
     gene            join(1929..2442,1..455)
                     /gene="mobV"
                     /locus_tag="CLQ69_RS00030"
                     /old_locus_tag="CLQ69_00045"
     CDS             join(1929..2442,1..455)
                     /gene="mobV"
                     /locus_tag="CLQ69_RS00030"
                     /old_locus_tag="CLQ69_00045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000024818.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobV family relaxase"
                     /protein_id="WP_000024818.1"
                     /translation="MANYAIMRCKKLTGMGSVASALQHCYRERETPNANAERTPENYCS
                     VSKSTDQAMGRVRELLPEKRRKDAVLAVEYVMTASPEWWKEATPRQQAEFFARSEQWLE
                     KKYGKDRVVAAVVHRDEATPHLSAFVVPLTQDGRLSAKEFIGGRSKMREDQSTYAESVK
                     KLGLERGIEGSRATHQTVQHYYESINRGTRSQVSISPEALEPRVLRKGIFTKDVEDQAA
                     IAKRLSHAVNDGFAGTIAMASQSAQNAKRARELQKTMDAQQKRLQSVTEPFKGLSREQM
                     TEILMMAQRFKQQNQEKEKQQRIEREKQRQTRSRGMGGMER"
                     /name="mobV"
     gene            complement(525..755)
                     /locus_tag="CLQ69_RS00035"
                     /old_locus_tag="CLQ69_28915"
     CDS             complement(525..755)
                     /locus_tag="CLQ69_RS00035"
                     /old_locus_tag="CLQ69_28915"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_124788667.1"
                     /translation="MMNAEDKLFKNVDRLMLHDSLKKNEVLTVWERTFLSSVYSIYRRT
                     SGNKYSTKGLSPKQKNAAFSILKKHNYHLND"
                     /name="hypothetical protein"
     gene            complement(742..1224)
                     /locus_tag="CLQ69_RS00040"
                     /old_locus_tag="CLQ69_00040"
     CDS             complement(742..1224)
                     /locus_tag="CLQ69_RS00040"
                     /old_locus_tag="CLQ69_00040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001565850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_223375251.1"
                     /translation="MNTKKISRLERHTYMDENGEVKQDSKIETFSIPAEPPYVKLYIAD
                     IAMIHGLSKSQNDVLLQLAMLIGWDGFVSVSKTRFEKTIQPRVHIEYQTFKNIIAALVD
                     KQIFFRAGRGELEANPFLFARGDWPSIYERRKKIELKISYDTNGRTVQTKVMDDEC"
                     /name="hypothetical protein"
     Typing          4..452
                     /name="MOBV"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="96.0"
                     /coverage="96.0"
                     /evalue="2.64e-71"
     Typing          1921..2441
                     /name="MOBV"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="94.253"
                     /coverage="96.0"
                     /evalue="4.94e-112"
ORIGIN
        1 agggaagccg cgccacgcat cagacagttc agcactacta cgaatcgata aaccgtggca
       61 cccgtagcca ggtatcgatc tcgccggagg cgctggagcc gcgtgtattg cggaagggca
      121 ttttcaccaa agacgtggaa gatcaggcag ccatagccaa acgtctaagc cacgcagtga
      181 acgatggctt tgcaggaacc atcgctatgg cctctcagag cgcccagaac gcaaaaagag
      241 cgcgtgagct acagaagact atggatgcgc agcagaaacg cctacagagc gtcacagagc
      301 cttttaaggg gctttccaga gagcagatga ccgaaatcct gatgatggct cagcggttta
      361 agcagcaaaa ccaggaaaag gaaaaacagc agcgtattga acgtgaaaaa cagcgacaga
      421 cgcgatcgcg tggcatgggt ggtatggagc gttagttttg atgcgatgca ggatagggct
      481 aacgccgcaa agtgacgtca tttgcggcat tcaccacgaa aaaattaatc attcagatgg
      541 taattatgtt tttttaaaat agaaaaagct gcgtttttct gctttggtga caaaccctta
      601 gttgagtatt tattaccgct agttctacga tatatgctgt aaacactgct taaaaaagta
      661 cgctcccaaa cagtcagaac ctcattcttt tttagtgaat catgcagcat tagcctgtct
      721 acatttttaa aaagtttatc ttcagcattc atcatccatt accttcgtct gcaccgttct
      781 tccattggtg tcataactga tctttaactc aattttcttt cttctttcgt aaattgatgg
      841 ccagtctccc cgtgcaaaaa gaaaggggtt agcttcaagt tccccacgcc ctgcccggaa
      901 gaatatttgt ttatctacaa gagccgcaat tatgttttta aaggtctgat attcaatatg
      961 aaccctgggc tgtatggttt tttcaaatct agtttttgat acagacacaa acccatccca
     1021 tccaatcagc attgccaatt gtaaaagcac atcattttga gattttgata aaccatgaat
     1081 catcgcaatg tctgcaatgt atagcttgac gtagggaggt tcggctggga tggaaaaggt
     1141 ctcgatctta gagtcttgtt ttacctcacc gttttcatcc atgtatgtat gccgttcaag
     1201 cctagaaatc tttttcgtat tcactccagc cccacgtttc gccatgattt agtactcgca
     1261 tttaagtact aaagagacat acagtcaagt cctttgtatc aagtacgatt agtacttgag
     1321 gtgagtacga ttagtccttg aggtgagtac gattagtact tgaggtgagt acgattggta
     1381 cttgaggtga gtacgattct tcgctctagc ccttggtaca agcgggttcc catatctata
     1441 tctatatatt aagggggaaa ataagggctg aaaaacggca tttttagaca ctgaaaaact
     1501 gccttttttt agcaaggagt gtacgcattt ctatgtacgg ggagtggaaa ttccgcttcc
     1561 tcgctttggc tgttcgttcc tcgtcgcgtt gctcctgcgg tacgcctcag ccaaagctgc
     1621 ggcgagcggt tcctgctctt tcaaagacga tttcattgcc tgatttcgtc aagggcgagc
     1681 gtagcgagtg ccatttaccc ttgacgacac tccggataaa acaggcttgg cagtggtggg
     1741 gggtggcgcg aagcgacgcc ttccacctgc cagaccgccg ttgattttga ccttctggca
     1801 gcttgctgcc cgaacgattt tgcgtagcaa agtctagtga gtacactatc atcttgatag
     1861 tggcccgccg gaggtatcgc aatgcgctcc cccgcctggc tgaatgaatg ccggaatcag
     1921 gggggaacat ggcgaactac gcgataatgc gctgcaaaaa gctgacggga atgggaagcg
     1981 tggccagcgc gttgcagcac tgctaccgag agcgtgagac gccgaacgct aacgctgaac
     2041 ggacaccaga aaactactgc tctgtgtcca aatcaacgga tcaggcaatg gggcgtgtgc
     2101 gggagctgct gccggaaaaa cgccgtaaag atgcggtact ggccgttgaa tacgttatga
     2161 cagcaagccc tgagtggtgg aaagaggcca caccacggca gcaggcggag tttttcgccc
     2221 gctctgagca atggctggag aagaaatacg ggaaggatcg tgttgtggcg gcggtggttc
     2281 accgggacga ggccaccccg cacctgtctg cgttcgtggt gccattgacg caggatggac
     2341 ggctgtccgc gaaagagttt attggcgggc ggtcaaagat gcgtgaagat cagagcacct
     2401 acgctgaatc agtaaaaaaa ctgggtcttg agcgcggcat cg
//
