LOCUS       NZ_CP028564             2811 bp    DNA     circular CON 14-OCT-2023
DEFINITION  Aeromonas hydrophila subsp. hydrophila strain WCHAH045096 plasmid
            p3_045096, complete sequence.
ACCESSION   NZ_CP028564
VERSION     NZ_CP028564.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07821593
            Assembly: GCF_002850695.3
KEYWORDS    RefSeq.
SOURCE      Aeromonas hydrophila subsp. hydrophila
  ORGANISM  Aeromonas hydrophila subsp. hydrophila
            Bacteria; Pseudomonadota; Gammaproteobacteria; Aeromonadales;
            Aeromonadaceae; Aeromonas.
REFERENCE   1  (bases 1 to 2811)
  AUTHORS   Wu,W., Long,H., Feng,Y. and Zong,Z.
  TITLE     The complete genome of Aeromonas hydrophila subsp. hydrophila strain
            WCHAH045096
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2811)
  AUTHORS   Wu,W., Long,H., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-AUG-2019) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
  REMARK    Sequence update by submitter
REFERENCE   3  (bases 1 to 2811)
  AUTHORS   Wu,W., Long,H., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
REFERENCE   4  (bases 1 to 2811)
  AUTHORS   Wu,W., Liu,Y., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-OCT-2017) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.4
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 200.0x
            Sequencing Technology             :: Illumina HiSeq; MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 10/14/2023 03:15:55
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,014
            CDSs (total)                      :: 4,853
            Genes (coding)                    :: 4,742
            CDSs (with protein)               :: 4,742
            Genes (RNA)                       :: 161
            rRNAs                             :: 11, 10, 10 (5S, 16S, 23S)
            complete rRNAs                    :: 11, 10, 10 (5S, 16S, 23S)
            tRNAs                             :: 126
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 25 of 111
            Pseudo Genes (incomplete)         :: 84 of 111
            Pseudo Genes (internal stop)      :: 9 of 111
            Pseudo Genes (multiple problems)  :: 7 of 111
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP028564.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2811
                     /organism="Aeromonas hydrophila subsp. hydrophila"
                     /mol_type="genomic DNA"
                     /strain="WCHAH045096"
                     /isolation_source="Sewage"
                     /sub_species="hydrophila"
                     /db_xref="taxon:196023"
                     /plasmid="p3_045096"
                     /geo_loc_name="China: Sichuan, Chengdu"
                     /collection_date="2015"
     gene            join(2716..2811,1..213)
                     /locus_tag="C1A23_RS00160"
                     /old_locus_tag="C1A23_00170"
     CDS             join(2716..2811,1..213)
                     /locus_tag="C1A23_RS00160"
                     /old_locus_tag="C1A23_00170"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_101618242.1"
                     /translation="MSKIYEMVRNETRNALVNEGYDDSPLLKPVTVRIPEAYLKLADKI
                     AANSNGTRQGLLCAILISGIDEALDGYSSVFENPKAVADELLLESGFTPYAKPESAE"
                     /name="hypothetical protein"
     gene            240..536
                     /locus_tag="C1A23_RS00165"
                     /old_locus_tag="C1A23_00175"
     CDS             240..536
                     /locus_tag="C1A23_RS00165"
                     /old_locus_tag="C1A23_00175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017411321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_107979016.1"
                     /translation="MTGQLLNVFKTPKGTNGEGKEFGGQHKIQVLGAVSLPNGETQNKL
                     VDLTCHDVAAFEPHQGKSVTFPVGVMAQGKGQVIYYIPKGAKPELADAFGAKF"
                     /name="hypothetical protein"
     gene            675..1748
                     /locus_tag="C1A23_RS00170"
                     /old_locus_tag="C1A23_00180"
     CDS             675..1748
                     /locus_tag="C1A23_RS00170"
                     /old_locus_tag="C1A23_00180"
                     /inference="COORDINATES: protein motif:HMM:TIGR01629.1"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage/plasmid replication protein, II/X family"
                     /protein_id="WP_262351562.1"
                     /translation="MTDWISARVACNHSEEIAGGAMVSYKDANDFSAGHDWAFAKPLPV
                     VGSHDANVRIKTSAFSGEDDTGRELHIDGNLVKFFQGHNLFGSHDIVGLVSAFMDHLCS
                     IPQLGLCPTELQRQSWRNGNFLLGRVDVTNMYQLRSLNDVLSWLATAEHTTTMNHRGRG
                     QLTKGSTLYYGKHSRRWSLKFYAKGQELTAKGHQLALTLPNRDRLIEYAQPALRCELTL
                     RSMQLKQTELQLAANWPRTAEGISQILQHYMKGLNMSDVRTLPAEALDSLPSGCRLAYQ
                     TWIEGHDLKAILARPTFYRYRAQLLKHGVDIATVQPRENANVVKLYRVLEAVPMAIPDW
                     ARGTTLYFDPTANKRTA"
                     /name="phage/plasmid replication protein, II/X family"
     gene            2181..2402
                     /locus_tag="C1A23_RS00175"
                     /old_locus_tag="C1A23_00185"
     CDS             2181..2402
                     /locus_tag="C1A23_RS00175"
                     /old_locus_tag="C1A23_00185"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_101618240.1"
                     /translation="MASTDLTTNSYQSLNALGLSIRAFVELAHVLPEEDQYAPLLLVLA
                     DRLEGDFTAMRNDTIKLWGPAESKRERA"
                     /name="hypothetical protein"
ORIGIN
        1 cggattccag aggcttatct caagctggcc gacaagattg ctgccaactc taacggcact
       61 cgtcagggcc tcctgtgcgc catcctgatt tccggcatag atgaggctct tgatggttac
      121 tcatccgtct ttgagaaccc caaggcggtt gccgacgaac ttttgcttga gtccggattt
      181 accccctacg ccaaacccga atctgccgag tgaggtgata tatgcaggga atgctactga
      241 tgaccggtca actgcttaac gtcttcaaga cacccaaggg caccaacggg gaaggcaagg
      301 agttcggcgg ccaacacaag atccaagttc tgggggctgt aagcctcccg aacggcgaga
      361 cccaaaacaa acttgtcgac ctaacctgtc acgatgtggc agccttcgaa ccgcaccagg
      421 gcaaatcggt gacgttcccc gtaggggtca tggcgcaagg caaggggcag gttatttact
      481 acatcccgaa gggggcaaag cccgaattgg ccgatgcctt cggggctaag ttttgatggg
      541 gagtgcggta ttgtaatacc gcacttttgt ctcaaattga gacaaagcta ccgacagccc
      601 ccccctgcac ttttgtgcca atttggcata aaagtcgagt ttaacatccg tcttggaatg
      661 ctctgacgat gataatgact gactggattt cagcccgtgt agcctgcaat cactctgagg
      721 agattgcagg cggagctatg gttagctaca aggacgccaa cgattttagc gccggacacg
      781 actgggcatt tgccaagccg ctgcccgttg tcggctccca tgatgccaac gtcaggatca
      841 agacatctgc tttcagcgga gaggatgata cggggcgaga gctgcatatc gatggcaacc
      901 ttgtgaagtt ctttcagggt cataacctct ttggcagtca tgacattgtt gggcttgtta
      961 gcgccttcat ggatcacctc tgtagcatcc cccagcttgg cttatgccca accgaactac
     1021 agcgccagtc atggcgcaat ggcaacttct tattggggcg cgtggacgtg actaacatgt
     1081 accagctccg aagcctcaac gatgtgctct catggcttgc tacagccgag cacaccacca
     1141 ccatgaacca ccgcgggcgc gggcagctta ccaagggctc tacgctctac tacggcaagc
     1201 attcgcgccg ctggtcgctc aagttctacg ccaagggaca ggagcttacc gccaagggcc
     1261 accaactggc cttgaccctc ccgaacaggg atcgccttat tgaatacgca caacctgcgc
     1321 taagatgtga actgactcta cgctcaatgc agcttaagca aaccgaactc cagttagctg
     1381 caaactggcc gcgaactgcg gagggtatat cccagatact tcagcactac atgaaagggc
     1441 ttaacatgtc agacgttcgc acattgcccg ctgaggcgct tgattcactg ccttcaggct
     1501 gtcgcttggc ataccagaca tggatcgagg ggcatgacct caaggccatt cttgctcgcc
     1561 caaccttcta cagataccgc gctcagcttc ttaagcatgg cgtggatatc gccactgttc
     1621 agccccgcga aaatgccaac gtggttaagc tctaccgagt gctcgaagcc gtccccatgg
     1681 ctatccctga ctgggcgcgt ggaaccaccc tttacttcga cccgaccgca aacaagcgca
     1741 ccgcttgacc gcgaaccatg acggggcccc cgctgggggt gtcatcgttc ggcgggcatt
     1801 gcggcgcgta ctgctggacg gcctgttact gggatggccg taggccgcac aggggcagga
     1861 cggacggcaa tacgccacgg ggttgcaccc cgaaccccgc ccctccctgc tcgctacccc
     1921 ttcgggccac gctcccagcg aggcccttaa ttatcgtcac tgtgaccgta aatcaaacct
     1981 ccatcctgac taatcaaaat ggcaatttga cgccaaggcc gccacgagga agcggagcga
     2041 gagcgcgcag cgacaatgac gagaaaggcc gataggcggg caggttgaaa ataactctgg
     2101 caggtgatca aatggacgag acgcaatagg gctggaaccc ccattgcgtc tctcaccaat
     2161 caacctatgc agaggtcatc atggctagca ccgatcttac caccaatagc tatcaatccc
     2221 tgaatgctct gggcctgtcc atcagggcct tcgttgagct tgcccacgtc ttgccggaag
     2281 aggatcaata tgcccctctc ctcctcgttc tcgctgaccg cctcgaaggt gacttcaccg
     2341 ccatgaggaa tgacaccatc aagctctggg ggcctgccga gtcgaagcgg gagcgagcct
     2401 agcgatagcg ccgacgagtc ggcccccgag gttattggta acagttacca aaatacctca
     2461 cagtcaccgc cccaacgaac aggggcggta gcccctacaa gccgcccccc tgttgtcgat
     2521 tgatccaccg gaaggcaggc ggcggagcac gcccattcac cccagagact gggacccccc
     2581 cttccctgca aaaccggctt ttgagggtct ccgccactga gggaggcaaa cgccacagcg
     2641 ccacgcgatg ttgacaatat cttatcgaga atctagatta atcaacgatg attcaacaat
     2701 gattccgagg ttaacatgag caagatttac gaaatggtca gaaacgaaac tcgcaacgct
     2761 ctcgtaaacg agggctatga tgattcaccc ctgcttaagc ctgtcaccgt c
//
