LOCUS       NZ_CP027163             1207 bp    DNA     linear   CON 04-JAN-2024
DEFINITION  Klebsiella pneumoniae strain AR_0361 plasmid unnamed5.
ACCESSION   NZ_CP027163
VERSION     NZ_CP027163.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07291504
            Assembly: GCF_002968495.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 1207)
  AUTHORS   Benahmed,F.H., Lutgring,J.D., Yoo,B., Machado,M., Brown,A.,
            McAllister,G., Perry,A., Halpin,A.L., Vavikolanu,K., Ott,S.,
            Zhao,X., Tallon,L.J., Sadzewicz,L., Aluvathingal,J., Nadendla,S.,
            Voskania-kordi,A., Simonyan,V., Patel,J. and Shawar,R.M.
  TITLE     FDA/CDC Antimicrobial Resistant Isolate Bank Genome Sequencing
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1207)
  AUTHORS   Benahmed,F.H., Lutgring,J.D., Yoo,B., Machado,M., Brown,A.,
            McAllister,G., Perry,A., Halpin,A.L., Vavikolanu,K., Ott,S.,
            Zhao,X., Tallon,L.J., Sadzewicz,L., Aluvathingal,J., Nadendla,S.,
            Voskania-kordi,A., Simonyan,V., Patel,J. and Shawar,R.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-FEB-2018) Center for Devices and Radiological Health,
            US Food and Drug Administration, 10903 New Hampshire Avenue, Silver
            Sring, MD 20993-0002, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SMRT v. 2.3.0; HGAP v. 3.0
            Genome Coverage                   :: 17.81x
            Sequencing Technology             :: Pacbio; Illumina
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/04/2024 16:32:59
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,541
            CDSs (total)                      :: 5,418
            Genes (coding)                    :: 5,287
            CDSs (with protein)               :: 5,287
            Genes (RNA)                       :: 123
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 131
            CDSs (without protein)            :: 131
            Pseudo Genes (ambiguous residues) :: 0 of 131
            Pseudo Genes (frameshifted)       :: 58 of 131
            Pseudo Genes (incomplete)         :: 80 of 131
            Pseudo Genes (internal stop)      :: 14 of 131
            Pseudo Genes (multiple problems)  :: 18 of 131
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP027163.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..1207
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="AR_0361"
                     /db_xref="taxon:573"
                     /plasmid="unnamed5"
     gene            complement(<1..303)
                     /locus_tag="CSB98_RS28520"
                     /pseudo=""
     CDS             complement(<1..303)
                     /locus_tag="CSB98_RS28520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016243889.1"
                     /note="incomplete; too short partial abutting assembly gap;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /name="hypothetical protein"
     gene            complement(354..704)
                     /locus_tag="CSB98_RS28525"
                     /old_locus_tag="CSB98_5534"
     CDS             complement(354..704)
                     /locus_tag="CSB98_RS28525"
                     /old_locus_tag="CSB98_5534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000493378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000493378.1"
                     /translation="MFTAFNERNDFSYAFEKIRNAISAPGENNLYAATELGLGILLRKY
                     EQFRQELDAAGELGNWEYDLDTYNHCIAVLQRYFTGNPSGLTERDARIYSHYLQTEHKR
                     FVKLAEELAAGR"
                     /name="hypothetical protein"
     gene            complement(848..>1207)
                     /locus_tag="CSB98_RS30485"
     CDS             complement(848..>1207)
                     /locus_tag="CSB98_RS30485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004234208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_105323111.1"
                     /translation="ACIGVTYADGRYMRMLCLCRCPAYGYVTPMLVSHFSRSDPKKGSS
                     GSDSAPPARSGPETQDVAVFPAVSDHICCAPPLPRDRPLTTLKGRCGYSVCVVHFRKLW
                     NNIKVGSGQSGRQVI"
                     /name="hypothetical protein"
ORIGIN
        1 gccgtcatcc gtcacaaccc ggaaacaacc ctcagcatac cgttcaagca tgaataccaa
       61 ctcggtggca atgtaatgca gttccttttt cattttatct tctgacgcct gtctctcacg
      121 cttaagcgtg aaataatgtg tcagccagat gccagtgagt gttatacccc cagtaagcag
      181 gccagtgata agcccggttg ccacgtttcc ccagatcccc gccccttgat taatcagctg
      241 tacggaaacc ggatgggatg tcgcagcaac tatactctca gttgcggcct gtatatcagt
      301 cattgatcat ttaccccttt atattcctga gaaatcccgc cctctgtccg tagtcagcgg
      361 ccggcagcca gctcttcagc cagtttcaca aaccttttgt gctcagtctg caggtaatgg
      421 ctgtaaatcc gggcatcacg ttctgtcagt ccggatggat tgccggtgaa gtaacgttgc
      481 agcaccgcaa tacagtgatt gtaggtatcg agatcatatt cccagtttcc cagctcaccg
      541 gccgcatcca gttcctggcg aaactgctcg tatttacgga gcagaatgcc aagacctaat
      601 tctgttgcag cataaagatt attttctcct ggcgcggaaa tcgcattacg gattttttca
      661 aaagcataac tgaaatcatt tctctcattg aatgcagtaa acatgtcctt tcctcagttg
      721 aatagttagc cgtgcaattt taccacacct caatcatcgt cagatgagtg ccactctgtc
      781 gcgacagtga ctttcacgag agtgattttc acatactaaa ataataagca gccatataac
      841 aacgtaatta aattacctga cggccgctct ggccggatcc gacttttatg ttattccaca
      901 gtttccggaa gtgtaccacg cacacggaat aaccacagcg ccctttcagg gtggtgagcg
      961 gccggtcacg gggcagggga ggggcacaac atatatggtc actgacagct ggaaacaccg
     1021 ctacatcttg tgtttccggg ccgctgcgcg ccggcggggc tgaatcagat ccggaactgc
     1081 cttttttcgg atctgagcgg gaaaagtgag aaaccaacat aggtgtaaca tatccatatg
     1141 ccgggcatct gcataggcaa agcatacgca tatacctacc atctgcatat gtaacaccta
     1201 tacaagc
//
