LOCUS       NZ_CP027159             5563 bp    DNA     linear   CON 04-JAN-2024
DEFINITION  Klebsiella pneumoniae strain AR_0361 plasmid unnamed7.
ACCESSION   NZ_CP027159
VERSION     NZ_CP027159.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07291504
            Assembly: GCF_002968495.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 5563)
  AUTHORS   Benahmed,F.H., Lutgring,J.D., Yoo,B., Machado,M., Brown,A.,
            McAllister,G., Perry,A., Halpin,A.L., Vavikolanu,K., Ott,S.,
            Zhao,X., Tallon,L.J., Sadzewicz,L., Aluvathingal,J., Nadendla,S.,
            Voskania-kordi,A., Simonyan,V., Patel,J. and Shawar,R.M.
  TITLE     FDA/CDC Antimicrobial Resistant Isolate Bank Genome Sequencing
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5563)
  AUTHORS   Benahmed,F.H., Lutgring,J.D., Yoo,B., Machado,M., Brown,A.,
            McAllister,G., Perry,A., Halpin,A.L., Vavikolanu,K., Ott,S.,
            Zhao,X., Tallon,L.J., Sadzewicz,L., Aluvathingal,J., Nadendla,S.,
            Voskania-kordi,A., Simonyan,V., Patel,J. and Shawar,R.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-FEB-2018) Center for Devices and Radiological Health,
            US Food and Drug Administration, 10903 New Hampshire Avenue, Silver
            Sring, MD 20993-0002, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SMRT v. 2.3.0; HGAP v. 3.0
            Genome Coverage                   :: 17.81x
            Sequencing Technology             :: Pacbio; Illumina
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/04/2024 16:32:59
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,541
            CDSs (total)                      :: 5,418
            Genes (coding)                    :: 5,287
            CDSs (with protein)               :: 5,287
            Genes (RNA)                       :: 123
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 131
            CDSs (without protein)            :: 131
            Pseudo Genes (ambiguous residues) :: 0 of 131
            Pseudo Genes (frameshifted)       :: 58 of 131
            Pseudo Genes (incomplete)         :: 80 of 131
            Pseudo Genes (internal stop)      :: 14 of 131
            Pseudo Genes (multiple problems)  :: 18 of 131
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP027159.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..5563
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="AR_0361"
                     /db_xref="taxon:573"
                     /plasmid="unnamed7"
     gene            complement(<1..65)
                     /locus_tag="CSB98_RS30105"
                     /pseudo=""
     CDS             complement(<1..65)
                     /locus_tag="CSB98_RS30105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001694628.1"
                     /note="incomplete; too short partial abutting assembly gap;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="DNA distortion polypeptide 3"
                     /name="DNA distortion polypeptide 3"
     gene            complement(184..627)
                     /locus_tag="CSB98_RS00890"
     CDS             complement(184..627)
                     /locus_tag="CSB98_RS00890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001074369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001074369.1"
                     /translation="MAKIYEFPQGAERSKLKKEIIRERKKRLRETNGNPVIRHAKWFWF
                     YLRLATAGALHLVSVISLAVLGAFSKAIFWIGGMLCVVTWFHLERQFWTPQNFTIPVIV
                     TLWGLSLFATPLMELLNKKMPWYRLLVPDAKHTSTEATNDDQP"
                     /name="hypothetical protein"
     gene            complement(636..1649)
                     /locus_tag="CSB98_RS00895"
                     /old_locus_tag="CSB98_5530"
     CDS             complement(636..1649)
                     /locus_tag="CSB98_RS00895"
                     /old_locus_tag="CSB98_5530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001348704.1"
                     /GO_function="GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_001348704.1"
                     /translation="MRLLLSLDMKILRSSYLKVRGFLIKGCIVVLNYNLCGVMICLHRK
                     GYMRLIVKTVTGLTKVRHRNEVGVTLASLSLSAKRVLFLALCQIDTKEMLDDDILEVDA
                     DFFSKATSLDKYASYAALKEGAKVLSSTTLVLNRDDLKNLADELGILSSKNKIPDRLDL
                     NLTEFCAYYDHLATVRIKFTNTAKRYFSKLIGSENRYTTQVLKSVVLLNSVNSTNLYQV
                     IRKYYSQNSSKKSFDISVDDLKEEMGLYTIEEGEKKYKYPKYSFFVRDVINKSINEIIE
                     KTEINQLSFSVVGKKGRMAHMLRFEFSINEKSSSFSEDDMAFLEEFDKVVPPKKNK"
                     /name="replication initiation protein"
     gene            <2260..2412
                     /locus_tag="CSB98_RS00900"
                     /pseudo=""
     CDS             <2260..2412
                     /locus_tag="CSB98_RS00900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000127484.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /name="DNA-binding protein"
     gene            3002..3517
                     /locus_tag="CSB98_RS00905"
                     /old_locus_tag="CSB98_5532"
     CDS             3002..3517
                     /locus_tag="CSB98_RS00905"
                     /old_locus_tag="CSB98_5532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001025391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ domain-containing protein"
                     /protein_id="WP_001025390.1"
                     /translation="MNIQEALNVFGLSGDLTEKDIKAAYKKAALKYHPDRNPLGAELMK
                     AVNAAFDFLMANIDKINQFQSTDENARYNYGEDLEKVLNTLSGLTGIVYEVIGNWVWIS
                     GETKEHKDILKEMGCKWASKKKQWFYRPEEHKSRWNRKEHSIEEIREMYGTAGKRKASG
                     WTRVEASA"
                     /name="DnaJ domain-containing protein"
     gene            3576..3812
                     /locus_tag="CSB98_RS00910"
     CDS             3576..3812
                     /locus_tag="CSB98_RS00910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006122499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000792381.1"
                     /translation="MKNKTITEAELINIFESYGAYICPDEIEVTAKECNENGSVLHRGL
                     NAEGWAHLFAKEEAYQQECEAQEAASDDGHFDE"
                     /name="hypothetical protein"
     gene            3872..4423
                     /locus_tag="CSB98_RS00915"
     CDS             3872..4423
                     /locus_tag="CSB98_RS00915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001549906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000662998.1"
                     /translation="MKEQKNFFERYKPVFEIVCRILGNGWRVNLLDDCQYRIKLTSPDF
                     KNYSIHIRMEKGRLVIIGSVDSRSWRSPYHTCTVSPERNPVEIAADIEKKILSDALDNV
                     DMAREYEQQLQQKREKKLILKGMLSRLVHLESWHGTLTGFKVENGLDGNVSERGDGYEM
                     VIRGLSVDQLIKVAGFIKQL"
                     /name="hypothetical protein"
     gene            4432..4701
                     /locus_tag="CSB98_RS00920"
     CDS             4432..4701
                     /locus_tag="CSB98_RS00920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001549907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001006717.1"
                     /translation="MNEVLSDRKNKGNVTYRIVVSEDATRLFIELEKLMKVRSKEADKK
                     TTKKIVFQKSFYYEEFSNVKDEIDDPILLKFYTDTIVKVQNHEF"
                     /name="hypothetical protein"
     gene            4691..4933
                     /locus_tag="CSB98_RS00925"
                     /old_locus_tag="CSB98_5533"
     CDS             4691..4933
                     /locus_tag="CSB98_RS00925"
                     /old_locus_tag="CSB98_5533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000008707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000008707.1"
                     /translation="MSFKPTPEEVKQARIKAGFTQQEAAERFGFTLSAWQAKETSGKTS
                     RGLAAGTYELLLLLADEHPDYQLVKREKNQDKVTK"
                     /name="hypothetical protein"
     gene            5027..5365
                     /locus_tag="CSB98_RS00930"
     CDS             5027..5365
                     /locus_tag="CSB98_RS00930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001549908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001099725.1"
                     /translation="MNTYVITFQALNTKKEKITCSAFVHSETLFLAVHSFEDKNRGRGY
                     VITSVSELLSEELTAKNSLKKNINFWFNECGLSKSEVINEVINWKNFAYTLKELEEAKN
                     EAIRELRS"
                     /name="hypothetical protein"
     Typing          complement(637..1508)
                     /name="IncX3"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ctctccaaca agaaccgact gtaggtcacc gggcaaacgt tgcggaatgg cgtcagagac
       61 gtcattttgc ggcgtttgcc ctatcctgca tcgcagtgaa aagaactcgc ctcgtgcgct
      121 atgattaacc gatgataaaa ggctgaaaga agcactgcaa gccgactgga taacattgtt
      181 gcttcacggc tgatcatcat tggttgcctc agtgctagtg tgctttgcat caggaaccag
      241 aagacgatac cacggcattt ttttgttaag cagctccatc aggggagtgg caaacaaact
      301 caatccccac agcgttacga ttactggaat cgtgaaattt tgcggcgtcc agaactggcg
      361 ctcaaggtgg aaccatgtaa caacacagag cattccacca atccagaaaa tagctttact
      421 gaaagccccc aggactgcca gagaaataac agagactaaa tgcagtgcgc cagccgtagc
      481 aagacgtaga taaaaccaga accatttagc gtgccggata accgggttac cgttcgtttc
      541 tcgcaatcgt tttttacgtt cccggatgat ttcttttttc agcttacttc gttcggctcc
      601 ctgcggaaac tcatatattt tagccatgtt ttgcctcact tattcttttt tggtggaacg
      661 actttgtcaa actcctctaa aaatgccata tcatcttccg aaaaggatga ggatttttca
      721 tttatactaa actcaaatct aagcatgtga gccattctcc cttttttccc aacaacagag
      781 aaagataact gatttatttc cgttttctca attatctcat taatgctttt attgataaca
      841 tcacgaacaa aaaatgagta tttaggatac ttatatttct tctccccttc ctcaatagta
      901 taaagtccca tttcctcttt taaatcatcc acggatatat caaaagattt ttttgaacta
      961 ttctgactgt aatatttcct aatgacttga taaaggtttg ttgagtttac actgttcaac
     1021 aacacaactg atttcaatac ctgagtggta tatctatttt cagaaccaat caacttagaa
     1081 aaatatcgct tagctgtatt tgtgaatttt atccgtacag ttgcaagatg atcgtaatag
     1141 gcacagaatt ctgttaagtt taaatccaag cgatcaggta ttttattctt agatgatagt
     1201 atcccaagtt catcagccaa attttttaaa tcatctctgt ttaaaactaa cgtagttgaa
     1261 gaaagaactt tagctccctc tttcagagct gcataagagg catatttatc taaagaagta
     1321 gcttttgaaa aaaagtcagc atcaacctcc aaaatatcat catctaacat ttcctttgta
     1381 tcaatctggc aaagagccag aaaaagcact ctttttgctg aaagggaaag ggatgcaaga
     1441 gttaccccaa cttcatttct atgtctaact ttcgttaatc ccgttactgt cttcacgata
     1501 agcctcatat aacctttcct atgtaggcaa atcataaccc cacaaaggtt gtaattcaag
     1561 acaacaatac aacctttaat taaaaaacct ctcaccttta gatatgaaga tctgaggatc
     1621 ttcatatcta aagatagcaa caaccgcatg tttcacttga tgttcagtca aactgtggaa
     1681 accgttaaaa atcttctcac cttacgtgaa aaatcctctc atctttagtg aaaaatctaa
     1741 ctaccttaac ttaaaaatct tctcacctta cgtgaaaaat cctctcacct tacgtgaaaa
     1801 atcctctcac ctttagcaat ttttttccat aattttcagg taattgaagc gagctaagtt
     1861 tttaagtttt taagatcaag aagaaaatat aaggctttta atgcacagcg tctgtggata
     1921 actcagcata aatccagagg atagatccgt ctggcctccc tgagcactgc accaccaaaa
     1981 attgagcaaa tattaacctt agcgcgtaag tgctctattg aaaccccgtg gaaattccgc
     2041 ttcctcgctc actcgcgggc ttcgccctgt cgttcggctg cggcgagcgg tgtaatctct
     2101 ctaaaagatc cagacgggat ccttttccga tccaattctt aaatgctctc aaaagccctc
     2161 agaggcgttt taaccgcttt aacccggtca tggttcaacg gagcgggtaa aatgcgctta
     2221 gaacgtcata cagctcgttt ttaacctgat ccctaatcag ggggtataac agaggcggcc
     2281 aaaaaatccg gccttgctcg tcagagtatc taccgcgcat tatccccgaa cggaaacccg
     2341 accatcacaa cacttgcaca gcttgcagca gtagccgggt tacagttcac tctcagtaag
     2401 cccaaccact aacctttcag acaagcccct cataccgggg ggattatttc ttatgccagc
     2461 aaaatttcac gaccggcgag gatggccaag tgttttttgc tggcaatttt cgtgcagcag
     2521 ctggcgcccg gattcatttt ttgctgtcag gcatcaatcg gtttcagcaa cccgccccgt
     2581 aattcgctgc taacgcatct cataacgcgc agatacagcg ccccgcgcca gtgtttcaca
     2641 ctgacccggc gtaccgttcg caagctcacg cgctaactgc gacaggctaa acatcgtctg
     2701 atagtcagaa attggcctgg caggggtgag gggggttatc gctctcattc gggcttgttg
     2761 gttcgccagt cctggcgaac gtctccggcg cgatgttacg acagcgcatt atgtaactac
     2821 agttcgcgcc tctttcggaa atcccttcat gcgcggtaaa gcaatataca tctttatgta
     2881 atctttacaa tgtaaagcat taaaaatgat tccataacca tcatttgatg gtataatgaa
     2941 tttgttggtt gggaatggtt ccctgccaga ttccagaagc ccacacgggc gggagcgaaa
     3001 aatgaatatt caggaagcat taaacgtttt tggtttatcc ggtgatctga ctgaaaagga
     3061 catcaaggcg gcatacaaaa aagcggcttt aaaatatcat ccagaccgca atccattggg
     3121 tgccgagctg atgaaagcag taaatgctgc gtttgatttt ctcatggcta acattgataa
     3181 aatcaatcag tttcaaagca ctgatgaaaa cgcacgttac aactacggtg aagatctgga
     3241 aaaagttctg aatacgcttt ccggccttac agggattgtc tatgaagtta ttggtaattg
     3301 ggtctggatt agcggagaaa ctaaagaaca caaagacatt ttaaaggaaa tgggctgtaa
     3361 gtgggcatct aagaaaaaac aatggtttta ccgtcctgaa gaacacaaaa gccgctggaa
     3421 ccgtaaagaa cacagcattg aagaaattcg tgaaatgtat ggtacagcgg gtaaacgtaa
     3481 ggcgtcaggc tggacacgtg tagaagcaag cgcataaccg gaatgggggc gaaagccccc
     3541 tagaacatgg caaagattga ttcggagaca cgttgatgaa aaacaagacc ataacggaag
     3601 cggagctgat aaacattttt gaaagttacg gagcctacat ttgcccggat gagatcgaag
     3661 ttacagccaa agaatgcaat gaaaatggtt cagtcttgca ccgtggctta aacgcagaag
     3721 gatgggcgca tctttttgcg aaggaagaag catatcagca ggaatgcgaa gcccaggaag
     3781 ctgcaagtga tgatggacac tttgatgaat agtcttaaaa ctgccgtaat tcgatttacg
     3841 gcttttttat tgagttcaaa aggctgaatc gatgaaagaa cagaaaaatt tctttgaacg
     3901 gtataaaccg gtgtttgaaa tcgtttgtcg aatcctgggg aacggctggc gtgtaaatct
     3961 gctcgatgat tgccagtaca ggattaagct aacctcacct gattttaaaa attactctat
     4021 acatattcga atggagaaag gaaggttagt tatcattgga agcgtagata gtcgcagctg
     4081 gagaagtcct taccatactt gcacagtatc gccagagcgt aaccctgtag aaatcgccgc
     4141 cgatattgaa aagaaaatcc tgtcggatgc tttagataat gtagatatgg cgcgagagta
     4201 tgaacaacag ttacagcaaa aacgcgagaa aaaactgatc ctgaaaggaa tgctatctcg
     4261 tttagtgcat cttgaaagct ggcatgggac attgaccggg tttaaagttg agaatgggtt
     4321 agatggtaac gtatcagaac ggggcgacgg atatgaaatg gtaattcgtg gcctgagtgt
     4381 agatcagctc ataaaggtag cggggtttat taaacagcta tgaggcaaaa aatgaatgaa
     4441 gtcctgagcg acaggaaaaa caaaggtaat gtaacataca ggattgttgt gtctgaagat
     4501 gcaacacgtt tgtttattga acttgaaaaa ctgatgaagg tacgctctaa agaagcggat
     4561 aaaaaaacaa ctaaaaagat tgttttccaa aaatcatttt attacgaaga attctcgaac
     4621 gttaaagatg aaattgatga tccaatttta ttgaaattct atacagatac tattgtgaag
     4681 gtacaaaatc atgagtttta agccaacacc tgaagaggtg aaacaagcac gtattaaagc
     4741 tggctttacg cagcaggaag ccgctgaacg gtttggtttt acgttatcag cctggcaagc
     4801 caaagaaaca tccggtaaaa cgtctcgtgg tttagccgct ggtacgtatg aattactttt
     4861 gctcctggct gatgaacatc cagattacca gctcgttaag agagaaaaaa atcaggataa
     4921 agtgactaaa taaattgcat taccatcata tgatggtata atttatttgt aggtcgggaa
     4981 tagttcctta ccatgatcca gtagcccaaa cgggcgggag actaaaatga acacgtatgt
     5041 tatcactttc caggctttaa acactaagaa agaaaaaatc acctgctctg cttttgtcca
     5101 ttcagaaact ctcttccttg ccgttcattc tttcgaagat aaaaatcgcg gtcgtggtta
     5161 tgttatcacg tctgttagtg aattgttgtc cgaggaactg acggcgaaaa attccctcaa
     5221 gaaaaatatt aacttttggt ttaatgagtg tggtttaagt aaatctgagg ttataaacga
     5281 agtaattaac tggaagaatt tcgcatatac ccttaaagaa ctggaggaag ccaaaaatga
     5341 agcgataaga gaactgcgga gttaatcaat taggggtggt atcaggttgt ggaggcaacc
     5401 tgataccgtg acactcaatt ccctcgcgag gaatataaaa tgtcggaacg catgttatca
     5461 gcaatacaga ctgttgaaaa gggtgggcgt ccggtttttc ccttgatgcc attctctgct
     5521 tttcctgagt acatggcatt actcagaaaa gccctggaaa aaa
//
