LOCUS       NZ_CP027147             4223 bp    DNA     linear   CON 25-NOV-2023
DEFINITION  Klebsiella pneumoniae strain AR_0363 plasmid unnamed2.
ACCESSION   NZ_CP027147
VERSION     NZ_CP027147.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07291506
            Assembly: GCF_002968475.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 4223)
  AUTHORS   Benahmed,F.H., Lutgring,J.D., Yoo,B., Machado,M., Brown,A.,
            McAllister,G., Perry,A., Halpin,A.L., Vavikolanu,K., Ott,S.,
            Zhao,X., Tallon,L.J., Sadzewicz,L., Aluvathingal,J., Nadendla,S.,
            Voskania-kordi,A., Simonyan,V., Patel,J. and Shawar,R.M.
  TITLE     FDA/CDC Antimicrobial Resistant Isolate Bank Genome Sequencing
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4223)
  AUTHORS   Benahmed,F.H., Lutgring,J.D., Yoo,B., Machado,M., Brown,A.,
            McAllister,G., Perry,A., Halpin,A.L., Vavikolanu,K., Ott,S.,
            Zhao,X., Tallon,L.J., Sadzewicz,L., Aluvathingal,J., Nadendla,S.,
            Voskania-kordi,A., Simonyan,V., Patel,J. and Shawar,R.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-FEB-2018) Center for Devices and Radiological Health,
            US Food and Drug Administration, 10903 New Hampshire Avenue, Silver
            Sring, MD 20993-0002, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SMRT v. 2.3.0; HGAP v. 3.0
            Genome Coverage                   :: 16.41x
            Sequencing Technology             :: Pacbio; Illumina
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/25/2023 04:23:15
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,878
            CDSs (total)                      :: 5,754
            Genes (coding)                    :: 5,603
            CDSs (with protein)               :: 5,603
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 151
            CDSs (without protein)            :: 151
            Pseudo Genes (ambiguous residues) :: 0 of 151
            Pseudo Genes (frameshifted)       :: 58 of 151
            Pseudo Genes (incomplete)         :: 99 of 151
            Pseudo Genes (internal stop)      :: 14 of 151
            Pseudo Genes (multiple problems)  :: 17 of 151
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP027147.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..4223
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="AR_0363"
                     /db_xref="taxon:573"
                     /plasmid="unnamed2"
     gene            complement(123..479)
                     /locus_tag="CSC00_RS26665"
                     /old_locus_tag="CSC00_5332"
     CDS             complement(123..479)
                     /locus_tag="CSC00_RS26665"
                     /old_locus_tag="CSC00_5332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005220858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_072196454.1"
                     /translation="MKMGDLAKRPAAEAAAPKSSTPMRQPVRPQGRPTRGKEKIKSRTM
                     SLEDEYFELLEMMKFIPRFEKFTRSDVIRAAIFHLAEKSPQEIEDIVKMNEAITAADVT
                     MRTDEIKRELMKKS"
                     /name="hypothetical protein"
     gene            complement(485..1150)
                     /locus_tag="CSC00_RS26670"
                     /old_locus_tag="CSC00_5333"
     CDS             complement(485..1150)
                     /locus_tag="CSC00_RS26670"
                     /old_locus_tag="CSC00_5333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005220859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="WP_021313115.1"
                     /translation="MTQIIVVGGTKGGPGKSTVAQQIAACLKIKKKKKVQITDIDIQRT
                     TTGWCEDRRHNEELELIPFAYVQDDIIKHITSLRGRFDYVVVDAGGFDSEIQRQAMLMA
                     NVILIPLRPKRRDLKSLRDIDPIVDSVSSVNDQIKIRAVMNQCPSLPSQAARIIAAKEI
                     VETFGIEAVPVNLYNRNVYDDAEEAGRSIFEMTGAERDKKAEAEIEALVEYVMTLEGE"
                     /name="AAA family ATPase"
     gene            1470..2027
                     /locus_tag="CSC00_RS26675"
     CDS             1470..2027
                     /locus_tag="CSC00_RS26675"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_023279422.1"
                     /translation="MSNYSGLNILKSKAKELAKKKGIKLTEALEAIAIDADFSNYHELS
                     SVAKRFPLEPRLMKAAFGETHFDNVIFSSDVYVQFEMAVDELLSDAVASTNANDFAIYD
                     LEATEVHYDEEKGLLKMTVSFSYEGVQMPDHFFSGTSFFLTANVPLVYRDNNWLIAEEG
                     IEIISSDSNADPDSEWYDLTDS"
                     /name="hypothetical protein"
     gene            complement(2224..2475)
                     /locus_tag="CSC00_RS26680"
                     /old_locus_tag="CSC00_5334"
     CDS             complement(2224..2475)
                     /locus_tag="CSC00_RS26680"
                     /old_locus_tag="CSC00_5334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005220862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_023279424.1"
                     /translation="MNGSLLSKVKSAIMTLAAVFFVLVGAYTWGGRVARRAMEEKAQRE
                     TNKRLQGTVDVKNETINEVRTKDASAVHRELRDKWMRD"
                     /name="hypothetical protein"
     gene            complement(2478..3170)
                     /locus_tag="CSC00_RS26685"
                     /old_locus_tag="CSC00_5335"
     CDS             complement(2478..3170)
                     /locus_tag="CSC00_RS26685"
                     /old_locus_tag="CSC00_5335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005220863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_023279425.1"
                     /translation="MSTPRGIRNNNPGNLDKGSPWQGLVNNPAEPRFCTFKDPVWGIRA
                     LTVTLITYHDKRRAKDGSSIDTIREVIERWAPPHENNTAAYINEVSKAVGVTPDMIIDL
                     HDYNTMRPLVEAIIRHENGRGPLKTLNSWYSAEVIDEGMRRAGVVKPVTAVKAVPVTKE
                     TAGATVTAGIGIAQLADVMPQISVAMDKAQGHITSGDTVRIIFGIATIVVAGFIAWSQI
                     RKHQAGVV"
                     /name="hypothetical protein"
     gene            complement(3184..3507)
                     /locus_tag="CSC00_RS26690"
                     /old_locus_tag="CSC00_5336"
     CDS             complement(3184..3507)
                     /locus_tag="CSC00_RS26690"
                     /old_locus_tag="CSC00_5336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005220864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_004109805.1"
                     /translation="MSNEMAGVTPEQVERIAAIVAREVVGKLSKELRDDIGQEVNDQLR
                     TYFGDMTPAQHSIQHSNLDKLLNRLDTISSGFFGGIISKITSFLITVLLLGLAAYGVKN
                     GLQ"
                     /name="hypothetical protein"
     gene            complement(3598..>4223)
                     /locus_tag="CSC00_RS26695"
                     /old_locus_tag="CSC00_5337"
     CDS             complement(3598..>4223)
                     /locus_tag="CSC00_RS26695"
                     /old_locus_tag="CSC00_5337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004109808.1"
                     /GO_component="GO:0098024 - virus tail, fiber [Evidence
                     IEA]"
                     /GO_process="GO:0046718 - viral entry into host cell
                     [Evidence IEA]; GO:0019062 - virion attachment to host cell
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tail fiber domain-containing protein"
                     /protein_id="WP_164074109.1"
                     /translation="TVLQAPRFTSRFNTRGSDGNVDGGQAAMWFEEQVGTNHRLILSVG
                     GFSQPIQYWQFLADGNIYGSQRGSVQFLGTSDARLKHDITPTDGQQSVDRIKALELVTF
                     VYNDDEQNRVRRGIIAQQAEEVDEQYVKHVNISYLDGNKQVNSERLQLDNNVIMMDTLA
                     AVKVLIKRVEALENKINSSEGSDAINTNQNTFDTGVAMSSEQLN"
                     /name="tail fiber domain-containing protein"
ORIGIN
        1 ccctactccc cattcacctt taattactgc aaccctgtca tcagaagcca aaaattcatc
       61 taaaattttt gttatggaca taattaatgc tcctaagaaa aaggcgccta acgcgccttc
      121 aatcaactct ttttcatcag ctcacgcttt atttcgtcag tacgcatcgt cacatcagca
      181 gcggtgatcg cctcgttcat ctttacgatg tcctcaattt cctgcgggga cttctctgcc
      241 agatggaaaa tggctgctcg tatcacatca gaacgggtga acttctcgaa gcgagggatg
      301 aacttcatca tctccagtaa ttcgaaatac tcgtcttcaa gcgacatcgt gcggcttttg
      361 attttctctt taccacgtgt tggacggcct tgtggacgga caggctggcg catcggtgtg
      421 ctgcttttag gcgcagcagc ttccgcagcc ggacgttttg ccagatcacc cattttcatg
      481 gacattattc accctccaag gtcattacgt attctactaa tgcttcaatc tcggcctcag
      541 cctttttgtc gcgttcggct ccggtcatct caaatatgga acgacccgcc tcttcggcat
      601 cgtcatagac gttgcggttg taaagattca ccggtaccgc ttcgatgcca aaggtttcga
      661 caatttcttt tgcagcgata atgcgcgcag cctgggaggg cagagacggg cactggttca
      721 ttacagcacg gattttgatt tggtcattca cgctgctaac gctgtcgacg atggggtcga
      781 tgtcacgcaa ggatttcaga tcgcggcgtt tcgggcgaag cgggataagg atcacgttgg
      841 ccatcagcat agcctggcgc tgaatttcgg agtcgaaacc accagcgtca acgacgacgt
      901 aatcgaaacg gccgcgaagc gaagtgatgt gtttgatgat gtcatcctgg acataggcga
      961 acgggatcag ctccagttct tcattatgcc ggcggtcttc gcaccatcct gtcgtggtgc
     1021 gctggatatc gatatcagtg atctggactt tctttttctt tttgattttc agacaggctg
     1081 caatttgctg agcaaccgtc gatttgcctg ggccaccctt ggtgccgccc accacaatga
     1141 tctgagtcat tcgtgatatc cctacgtgtg atttatcgtc gtatgaaaca acttgttttc
     1201 ttatatgcga tatagcctaa atgcctacgg cttcggtgta aaggttaaat ggtaggtagt
     1261 tcatatcgag tgtataaaat cgccttgcgc ctgcattgac gcctctacat tcacaggtta
     1321 gtatttcacc aggtggtgat ggtcacctgg cgcctgtctc gcaaagcaat agcccatcat
     1381 tctgcagtac ccaacacttg gccgccatca ttatgacgct gcccggttaa caggctatcg
     1441 gtatgcgtct aatgtgtgga aacatagcca tgtctaacta ctctggttta aacattctca
     1501 aaagcaaggc taaagaatta gctaaaaaga aagggattaa gctaacggaa gctcttgaag
     1561 ccatcgctat cgatgcagat ttttcgaact accatgagct ttcatctgtg gcgaagcgat
     1621 ttccattaga acctcggtta atgaaggccg cttttggtga gacgcacttc gataacgtca
     1681 ttttttcgag tgatgtgtac gttcaatttg agatggctgt tgacgaactt ttatctgatg
     1741 cggttgcttc aactaatgct aatgattttg caatatatga cctcgaggca actgaagttc
     1801 attatgacga ggaaaagggg ctattgaaaa tgactgtgtc attcagttat gaaggtgttc
     1861 aaatgccaga ccattttttc tcaggtacat cattcttctt aacagcaaat gttcctcttg
     1921 tatatcgtga taataattgg ctaatcgctg aagaaggtat cgaaataata tcttcagact
     1981 caaatgcaga tcctgacagc gaatggtacg accttacaga tagctgagaa acaaggcgct
     2041 ttggtcaaaa ccaaagcgcc ttctacctga tattgatagt aatgcaatca ccacttacac
     2101 aaccgctcac ccagcgtgtt gtggatcagg atttccctct cagtttcttc tgtcagggcg
     2161 tcgtccttgc tgatgtagat agggtttgcc ccatcacaga attgtacgcc cacggtctga
     2221 ggtttaatca cgcatccact tatcgcgaag ctcgcgatga acggcagaag catccttagt
     2281 cctgacttca ttaatcgtct catttttcac atccactgtg ccttgaagcc gtttgttggt
     2341 ttctctctgc gccttttctt ccatggcccg ccgggcaact cgtccacccc aggtgtacgc
     2401 cccaacgagc acaaagaaga cggcagccaa agtcatgatg gccgatttga cctttgaaag
     2461 caggctgccg ttcatggtta caccactcct gcctgatgct tacgaatctg agaccaggca
     2521 ataaagccgg cgacaactat ggtcgcaata ccgaagataa tgcgaacggt atccccgctg
     2581 gtgatatgtc cctgggcctt atccatcgca acggagatct gcggcattac gtccgccagc
     2641 tgcgcaatac cgatacctgc agtcaccgtt gcgcctgcag tttctttcgt gacaggtacg
     2701 gctttcactg cagtcaccgg tttaacgacg ccggcgcgac gcataccttc gtcaataact
     2761 tcggccgaat accagctgtt gagtgttttc aacgggccac gaccgttctc atgacgaatg
     2821 atcgcctcca ccagcggccg catagtattg tagtcatgca gatcgatgat catgtccggc
     2881 gtcacgccta cggctttaga gacctcattg atataggcgg ccgtgttgtt ttcatgtggc
     2941 ggcgcccaac gctcgatgac ttcgcggatc gtatcgatgc tggaaccgtc ttttgcgcgg
     3001 cgcttatcat ggtaggtgat gagcgttact gttagtgctc gaatccccca tacggggtct
     3061 ttaaaagtgc agaaccgcgg ttccgccggg ttgtttacta acccttgcca cggcgacccc
     3121 ttatccaggt tgccagggtt attgttacga atgcctcttg gagtactcat ccttgttctc
     3181 ctgttattgc agtccatttt tcacgccata agcggccaaa cccaaaagca gcacggtgat
     3241 caggaacgag gtaatcttgg aaataatgcc tccaaagaac ccgcttgaaa tcgtgtcgag
     3301 ccgattaaga agtttgtcca ggttggaatg ctgaatgcta tgttgcgccg gagtcatatc
     3361 accaaagtag gttcgcagct gatcgttgac ctcctggcca atatcatcgc gaagctcctt
     3421 acttaatttt cctacgactt ctcgcgccac aattgcggca atgcgctcca cctgctctgg
     3481 cgtcacgcct gccatctcgt ttgacatgtc ttcctccatg aataagtcaa atcggatggc
     3541 agatttatat cataaattag aaactaattg taggtaagta cttacataca aattagatta
     3601 atttaattgc tcactactca tggccacgcc tgtatcgaag gtattctggt ttgtatttat
     3661 ggcgtcgctc ccttctgatg agttaatttt attctccagc gcttcaactc gcttaatcag
     3721 taccttcacc gccgccagcg tgtccatcat tatcacgttg ttgtcgagct gaaggcgctc
     3781 actgttaacc tgcttattac catccaggta cgaaatatta acgtgtttca cgtattgctc
     3841 gtctacttcc tcggcctgct gcgcgatgat cccccggcgg acgcggttct gttcgtcgtc
     3901 gttatagacg aacgtcacca gctccagcgc ctttatgcgg tctactgact gctgtccatc
     3961 agtaggcgtg atatcgtgct tcaggcgagc gtcagacgtc cccagaaact gcacgctacc
     4021 gcgctggctt ccgtagatat tgccgtcggc caggaattgc caatactgta ttggttgcga
     4081 aaatccacca acagaaagaa ttagtctgtg gttagtccct acctgctctt cgaaccacat
     4141 agccgcctgt ccgccatcaa cgttgccatc actaccgcgc gtattaaatc ttgacgtaaa
     4201 acgtggcgct tgtaacacgg tgc
//
