LOCUS       NZ_CP024802             2336 bp    DNA     circular CON 16-JUN-2024
DEFINITION  Escherichia coli strain AMA1167 plasmid pAMA1167-3, complete
            sequence.
ACCESSION   NZ_CP024802
VERSION     NZ_CP024802.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07983336
            Assembly: GCF_002803905.1
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 2336)
  AUTHORS   Overballe-Petersen,S., Roer,L., Ng,K., Hansen,F., Justesen,U.S.,
            Andersen,L.P., Stegger,M., Hammerum,A.M. and Hasman,H.
  TITLE     Complete Nucleotide Sequence of a ST410 Escherichia coli strain
            carrying blaNDM-5 on an IncF multidrug resistance plasmid and
            blaOXA-181 on an IncX3 plasmid
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2336)
  AUTHORS   Overballe-Petersen,S., Hasman,H. and Hammerum,A.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-NOV-2017) Microbiology and Infection Control, Statens
            Serum Institut, Artillerivej 5, Copenhagen S 2300, Denmark
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2017
            Assembly Method                   :: other v. October-2017
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 20.0x
            Sequencing Technology             :: other; Illumina MiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002803905.1-RS_2024_06_15
            Annotation Date                   :: 06/15/2024 01:59:40
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,826
            CDSs (total)                      :: 4,709
            Genes (coding)                    :: 4,460
            CDSs (with protein)               :: 4,460
            Genes (RNA)                       :: 117
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 249
            CDSs (without protein)            :: 249
            Pseudo Genes (ambiguous residues) :: 0 of 249
            Pseudo Genes (frameshifted)       :: 79 of 249
            Pseudo Genes (incomplete)         :: 163 of 249
            Pseudo Genes (internal stop)      :: 51 of 249
            Pseudo Genes (multiple problems)  :: 36 of 249
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP024802.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2336
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="AMA1167"
                     /isolation_source="liver"
                     /host="Homo sapiens"
                     /db_xref="taxon:562"
                     /plasmid="pAMA1167-3"
                     /geo_loc_name="Denmark"
                     /collection_date="2015"
                     /collected_by="Statens Serum Institut"
     gene            complement(469..888)
                     /locus_tag="CUC42_RS24495"
                     /old_locus_tag="CUC42_24485"
     CDS             complement(469..888)
                     /locus_tag="CUC42_RS24495"
                     /old_locus_tag="CUC42_24485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000660103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_063135506.1"
                     /translation="MSHMKKTTFSGRWNEKALSMGWTAIPNALFFMQRPLGISPTNFNV
                     LLNLFIHWWEAGTWPYPSQKGLASRMGVSVRTIQRSLDEMTEMGLIEKTATMRNHPRYK
                     GRNIYDLTPIIKMIEEMAPELKRTVGNKKSDSQEG"
                     /name="helix-turn-helix domain-containing protein"
     Typing          complement(1602..1969)
                     /name="rep_cluster_2373"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="96.206"
                     /coverage="85.0"
                     /evalue="2.25e-170"
ORIGIN
        1 ctgtttgcta ccgctacctt cagcagtgca aagattaagg cacgttagcg atgtatacat
       61 cgccgcgccg caagggtgcc ccttccgaat cccgttcatc attgcgtgct gattaagcca
      121 cgttaaatcc gaccccctta gcaataaatc cttccatgcc tgacggcctg gccaacgcct
      181 cacggccgca cagtaaactg cgcacccgtg aggcgttatc agggttgttc atgatgtctt
      241 tcagggcgct cgccggattt tagccgctaa aatggcggcc atgcgttcgt gtgcatagcc
      301 atgcagacgc gccagaatca tcaggggcat ttttcggggt tctgcacggg gaaagatccc
      361 ggaaacggcc ctgaggccgc aaaaacgcgc tgagggcgtc tcaggtggta cgggcaacgg
      421 atgttatggt aaatcgcatt cgttgtttta attatgcttg ccgtgtaact acccctcttg
      481 gctgtcgctt tttttattgc ctacagtcct ttttagctct ggagccattt cttcgatcat
      541 tttaatgatg ggagttaagt cgtaaatgtt tcgccctttg tatctgggat ggtttctcat
      601 agtggctgtt ttttctataa gccccatctc tgtcatctca tctaaagagc gttggatagt
      661 acgaaccgaa acccccatac gagatgccaa acctttttgt gaaggatatg gccatgtgcc
      721 tgcttcccac cagtgaataa agagatttag cagcacatta aagttggttg gagatatacc
      781 taaaggcctt tgcatgaaga aaagagcgtt agggatagcc gtccacccca tagatagtgc
      841 tttttcattc catcgaccgc tgaaagtggt ttttttcata tgtgacataa tcgaagacct
      901 gtgtttaaat tgctgttatc tcataggaga taacagcaat ttaaacacag gtcttcgata
      961 tatatctata ttaatattaa tatagtatga cattgtggcg tattgcgtgt atgcctgcct
     1021 gcaacctatg atcattttga acacaaaaaa aaggccgccc acagggacgg ccgaagtact
     1081 acagtaacat ctcaaattaa cagtatttca aaatgatgct cagcaaagtg agcagcgcga
     1141 tgagcgcttg aagataatct tctagcattt tcgcctccta gtctgtagtt gagtatttac
     1201 agagaggcca tgcttcttcg ttgcagcgaa gaggtaggcc tctcccgcaa ctgccattct
     1261 tttcaggcat cttggcaatc atatctcaat tcactgcgct accgaatggt aataatcata
     1321 cccaatcgtt ttttgcttaa tttttaagca aaagcgtctt tttctgtata tttttcatgg
     1381 cggtcagcta gcttcttgac gtcgtttact tttccagcgt accctgaaaa cgaaaaaacc
     1441 accctggcag gtggtttttc gaaggttagt taatcctggc agattatcta accgtggtaa
     1501 cagtcttgtg cgagacatgt cacccaattc gtccttccag tgtagccgta gtccggtcgc
     1561 cacttcaaga actctcgata catctctcgc acatcctgtt taccagtggc cgctgccagt
     1621 ggcgttaagt cgtgtctttc cgggttggac tcaagatgat agttaccgga taaggcgtag
     1681 cggtcggact gaacgggggg ttcgtgcata cagtccagct tggagcgaac tgcctacccg
     1741 gaactgagtg tcaggcgtgg aatgagataa acgcggccat aacagcggag tgacaccggt
     1801 aaaccgaaag gcaggaacag gagagcgcac gagggagcta ccagggggaa acgcctggga
     1861 tctttatagt cctgtcgggt ttcgccacca ctgatttgag cgtcagattc tgtgatgctt
     1921 gtcagggggg cggagcctat ggaaaaccgg cagctccgcg gcctttcttc atcctgccta
     1981 accccttctt catcgccgta tgcctttatg tatcttctcc gtccgctcgc cgcagccgaa
     2041 cgaccgagcg tagcgagtca gtgagcgagg aagcggaata tcttcgggct cacgtccggc
     2101 accttacact ccataactgc attttttcat aggatgcagg atagggctaa cgccgcaaag
     2161 tgacgtcacc tgatgctcct ggattacaaa tgttaaagca tcggacagga aatgttttgt
     2221 gaccacagcc agtttgccca tgttacaaaa cagcgggaca agatgtgttt ttggagtacc
     2281 gccggcacgc caatgactcc tggtcaggct ctgcccgaca cccgtatgtt tgctat
//
