LOCUS       NZ_CP024569             3825 bp    DNA     circular CON 18-JUN-2023
DEFINITION  Klebsiella pneumoniae strain INF278 isolate INF278 plasmid unnamed6,
            complete sequence.
ACCESSION   NZ_CP024569
VERSION     NZ_CP024569.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3357272
            Assembly: GCF_002752975.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3825)
  AUTHORS   Gorrie,C.L., Mirceta,M., Wick,R., Judd,L.M., Wyres,K.L.,
            Thomson,N.R., Strugnell,R.A., Pratt,N.F., Garlic,J.S., Watson,K.M.,
            Hunter,P.C., McGloughlin,S.A., Spelman,D.W., Jenney,A.W.J. and
            Holt,K.E.
  TITLE     Antimicrobial resistant Klebsiella pneumoniae carriage and infection
            in specialized geriatric care wards linked to acquisition in the
            referring hospital
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3825)
  AUTHORS   Gorrie,C.L., Mirceta,M., Wick,R., Judd,L.M., Wyres,K.L.,
            Thomson,N.R., Strugnell,R.A., Pratt,N.F., Garlic,J.S., Watson,K.M.,
            Hunter,P.C., McGloughlin,S.A., Spelman,D.W., Jenney,A.W.J. and
            Holt,K.E.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2017) Biochemistry and Molecular Biology,
            University of Melbourne, Flemington Road, Parkville, Victoria 3052,
            Australia
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 10-JAN-2017
            Assembly Method                   :: Unicycler v. 0.4.0
            Assembly Name                     :: INF278
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 115x
            Sequencing Technology             :: Illumina HiSeq and ONT
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/18/2023 11:26:52
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,691
            CDSs (total)                      :: 5,569
            Genes (coding)                    :: 5,415
            CDSs (with protein)               :: 5,415
            Genes (RNA)                       :: 122
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 154
            CDSs (without protein)            :: 154
            Pseudo Genes (ambiguous residues) :: 0 of 154
            Pseudo Genes (frameshifted)       :: 50 of 154
            Pseudo Genes (incomplete)         :: 103 of 154
            Pseudo Genes (internal stop)      :: 16 of 154
            Pseudo Genes (multiple problems)  :: 15 of 154
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP024569.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3825
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="INF278"
                     /isolate="INF278"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="unnamed6"
                     /geo_loc_name="Australia"
                     /collection_date="2014-01"
     gene            522..794
                     /locus_tag="CTI68_RS29560"
                     /old_locus_tag="CTI68_29360"
     CDS             522..794
                     /locus_tag="CTI68_RS29560"
                     /old_locus_tag="CTI68_29360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004897311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_019405140.1"
                     /translation="MATDAQVKEINALIKKYPDSCSICHEVYDEDDVTYTVFGYDRKGK
                     IQVTTGCCAGMLTEPVLLGVCGCFDPEERDEIMQNHPMAKQFFTE"
                     /name="hypothetical protein"
     gene            2950..3141
                     /locus_tag="CTI68_RS29575"
                     /old_locus_tag="CTI68_29375"
     CDS             2950..3141
                     /locus_tag="CTI68_RS29575"
                     /old_locus_tag="CTI68_29375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_004187666.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSRLDALQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            3141..3542
                     /locus_tag="CTI68_RS29580"
                     /old_locus_tag="CTI68_29380"
     CDS             3141..3542
                     /locus_tag="CTI68_RS29580"
                     /old_locus_tag="CTI68_29380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310048.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_012579088.1"
                     /translation="MARVSISEAARLTGKSRTTLHRLIKAGDLSTCSGERNAKMVDTSE
                     LLRVFGPFEQPKGEHHSGQVSGQRDTASADQSEQVIRHLKQEIEHLNTLLLSKDSHIDS
                     LKQAMLLLENHQAKLTESPAPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     Typing          2114..2328
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="83.562"
                     /coverage="100.0"
                     /evalue="1.62e-49"
     Typing          complement(1617..2133)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="85.847"
                     /coverage="87.0"
                     /evalue="5.5e-153"
ORIGIN
        1 atgacttgac tctagagtcg acttgccggg ttggtggctt tttgaccatg gcgactctag
       61 agtcaagtca cgagtcgaat cgccggtgaa ttgtctggtg agtcgtccgg cgacttgcca
      121 taacgtgatt gccggccgtc gacgaacccg attcctgatc gtgctgaaaa ccggttttcc
      181 ggctgcgccg gcaacgcttc acggccacgc aataaattgc gtccccgttc accgttttcg
      241 gataggaaga acgccggaaa caggacttac cctggctgaa tggcgtgaat ttccgcgcta
      301 tgcacttgcg tgcatactca tgcatgccgt aaaaacagag ccagcgcgtt tctggcggat
      361 tttcgggtgg tttgttgcct gttttaccgg tttcccgtca ggaacgccct gaggccgttt
      421 tcgcggtgcg cgtaatggga cgttatggta aatcaacggc ggatgcctga gtctgtgtta
      481 gagtcagcgg attgtgataa tcagtgactc agggagatgt tttggctact gacgctcagg
      541 taaaagaaat taatgcactc atcaaaaaat acccggactc atgctccatc tgtcatgaag
      601 tctatgatga ggatgatgtg acctacaccg tttttgggta tgaccggaaa ggtaaaatac
      661 aggtcaccac gggatgctgt gccggaatgc tgacagagcc ggttctgctg ggtgtctgtg
      721 ggtgctttga cccggaagaa cgtgacgaga tcatgcagaa tcaccccatg gcaaagcagt
      781 ttttcacaga gtgattccgt atctgttgag tctgaagccc gccttgtgcg ggctttttca
      841 tatctgcgtg aaatgagacg ttatggtaaa tctctaaagg caatatttcc cgtcccttgg
      901 agcgaactac tctgtatttg atctttggtg ttgatacccc gctgcttgca gaggggggat
      961 tcattatcgt tgttgtttgc tgtaattgtc taaaatatat ttggggatag atacgggtac
     1021 acattcagca gatattatgt ttttcccgga tatattatga taaatgtctt tgtttgcaat
     1081 gattttatct ttgaattcaa tgcattcttc attcagaatg aaggtgttaa caacattgtc
     1141 tttcattccc aaatttgcta attctgaaga acaacttgca atattattcg tgttaaaaca
     1201 agttgttagt attattgcgt atatgtatgg cattaaataa acctatttaa aaaagtacgg
     1261 aatgatagtg atcttgttcg gaaatatact agtcagactt taagtctcag ggatatgaac
     1321 ctagaacatc gttgtattaa cttgtttgag tgttccaatc ctgaatattg atgttatttg
     1381 agtataaagg aaacataata aatatcacaa ggatattggt taactattta tttttaaata
     1441 atttcttgag atctgacgtt ggacgtcgta gtctcttgcc atgtaaacga aaaaaccacc
     1501 ttgcagggtg gtttttcgaa ggttcagtaa accggcaagt ttctgaaccg tggtaacagt
     1561 cttgtgcgag acgtcaccaa atctgtcctt ttagtgtagc ctcagtctgg ccaccacttc
     1621 aagaactctt cgtaaatctc tcgcacatcc tgtttaccag tggccgctgc cagtggcgtt
     1681 aagtcgtgtc tttccgggtt ggactcaaga cgatagttac cggaaaaggc gcagcggtcg
     1741 ggctgaacgg ggggttcttg catacagccc agcttggagc gaactgtcta aacggaacgg
     1801 ggcgtggtga tttaggtaaa gcttccacca ctacacggat gccgcaggac gggaacagga
     1861 gagcgcaaga gggagccacc agggggaaac gcctggtatc tttatagtcc tgtcgggttt
     1921 cgccaccact gatttgagcg tcagatttcg tgatgcttgt caggggggcg gagcctatgg
     1981 aaaaacggct ttgccgcggc cttatcgtat ccctgttaag tttcttcctg gcatccacca
     2041 ggaaataaat ttccgcccca ttagtaagcc tgcaccgctc gccgcagccg aacgaccgag
     2101 cgcagcgagt cagtgagcga ggaagcggaa tatcacctga accagcatct tctcctgacg
     2161 ccggaaagcc tcatttcact cctgccacat gaagcacttt ggcaaatcac cacttcggtt
     2221 taaaatattt agccagtatg cactccgcta gcgctacgtg actggttcag ggctgcgccc
     2281 cgaaacccgc taacacccct cagctactgg atatcacacc atgccatctg agtatgatga
     2341 acaaccggat gcgactgatg ctctgtttcc cggcgaatat gacctttttg acttaatggc
     2401 tcatgttact gaagagaacc tgcacgcccc ggtggattct ggcccgcctg tcggccggga
     2461 agcgttatag ctttttcgct ggccagcgta catgtaatac gctggtatta catgttattt
     2521 gtttattttc atgttgttac agatgattgt aatacgttgc gtattacgct aatacacgaa
     2581 ataactccat ttttttcatt taattcatgc agttgcgata aaaatcgcgg ctgcgttagg
     2641 tgtatgacca tttaaggggc aaaaaattat cattctggct gggtgatctg cgcaggttaa
     2701 ggatcatcgg cgacgaaaaa gcgtctttaa ctgcttcgtt catgcttgca tgaacggatt
     2761 atttttccag actacaggta aactacagga agactacaaa agttgatgat ttaatcctgc
     2821 gttttagtgc gatgactaca gataaactac aaaataacta caggataacc tcagatccgt
     2881 tctctgaacc attcgtacat ccgaccccct taccggttta cactgagcac tgatgctctg
     2941 agggccctta tgacgaaaca acagaaaaca gcgctgaaca tggctaaatt catccagaat
     3001 cagtctctgc tcctgctgga gaagcttaac gagcttgatc tcgatgttga ggcggacctt
     3061 tgtgagaaac tccacgatga tgcggagcat cttttccgta cactgtcctc gagactggat
     3121 gcattacagg atggtaactg atggccagag tgtctattag tgaggctgcc cgactgacgg
     3181 gtaagagtag aacaacactg cacaggttaa ttaaagcagg tgacctgtcc acctgtagcg
     3241 gtgaacgcaa tgcaaaaatg gtagatactt cagagctttt acgtgtcttt ggtccctttg
     3301 aacaaccgaa gggtgaacac cattctggac aggtctctgg acagcgtgat acagcctctg
     3361 ctgaccagag tgaacaggtg attcgtcatc tgaaacagga gattgaacac ctgaacacct
     3421 tacttttgtc caaggattcg cacattgaca gcctgaaaca ggccatgctc cttcttgaaa
     3481 atcaccaggc aaaattaact gaatccccgg cgccatggtg gaaattctgg aaaaaatcct
     3541 gatcccgcca tgcttccatt ttgctctccg gccattccgg ggagttcctg aaccttccca
     3601 aaaatcgtca gatccctgaa cgctcctcac cactaaaaat acccacacac tacgcaaaat
     3661 taaaattttg cagatagacc tttattttca atcagttatc tgttttaaat tacgcaattt
     3721 tattttttgt aaggtgaatc cgagtcgtgg acgactctat ggcgaatcgc cgatgacttg
     3781 cccacgattc atatgtgaat cacgccatat aatcagtacg ttatg
//
