LOCUS       NZ_CP024555             3825 bp    DNA     circular CON 25-NOV-2023
DEFINITION  Klebsiella pneumoniae strain INF163 plasmid unnamed6, complete
            sequence.
ACCESSION   NZ_CP024555
VERSION     NZ_CP024555.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07211279
            Assembly: GCF_002753405.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3825)
  AUTHORS   Gorrie,C.L., Mirceta,M., Wick,R., Judd,L.M., Wyres,K.L.,
            Thomson,N.R., Strugnell,R.A., Pratt,N.F., Garlic,J.S., Watson,K.M.,
            Hunter,P.C., McGloughlin,S.A., Spelman,D.W., Jenney,A.W.J. and
            Holt,K.E.
  TITLE     Antimicrobial resistant Klebsiella pneumoniae carriage and infection
            in specialized geriatric care wards linked to acquisition in the
            referring hospital
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3825)
  AUTHORS   Gorrie,C.L., Mirceta,M., Wick,R., Judd,L.M., Wyres,K.L.,
            Thomson,N.R., Strugnell,R.A., Pratt,N.F., Garlic,J.S., Watson,K.M.,
            Hunter,P.C., McGloughlin,S.A., Spelman,D.W., Jenney,A.W.J. and
            Holt,K.E.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2017) Biochemistry and Molecular Biology,
            University of Melbourne, Flemington Road, Parkville, Victoria 3052,
            Australia
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 19-JUN-2017
            Assembly Method                   :: Unicycler v. 0.4.0
            Assembly Name                     :: INF163
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 82x
            Sequencing Technology             :: Illumina HiSeq and ONT
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/25/2023 03:11:43
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,702
            CDSs (total)                      :: 5,580
            Genes (coding)                    :: 5,420
            CDSs (with protein)               :: 5,420
            Genes (RNA)                       :: 122
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 160
            CDSs (without protein)            :: 160
            Pseudo Genes (ambiguous residues) :: 0 of 160
            Pseudo Genes (frameshifted)       :: 54 of 160
            Pseudo Genes (incomplete)         :: 105 of 160
            Pseudo Genes (internal stop)      :: 16 of 160
            Pseudo Genes (multiple problems)  :: 14 of 160
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP024555.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3825
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="INF163"
                     /db_xref="taxon:573"
                     /plasmid="unnamed6"
     gene            complement(2153..2425)
                     /locus_tag="CTI74_RS29580"
                     /old_locus_tag="CTI74_29385"
     CDS             complement(2153..2425)
                     /locus_tag="CTI74_RS29580"
                     /old_locus_tag="CTI74_29385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004897311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_019405140.1"
                     /translation="MATDAQVKEINALIKKYPDSCSICHEVYDEDDVTYTVFGYDRKGK
                     IQVTTGCCAGMLTEPVLLGVCGCFDPEERDEIMQNHPMAKQFFTE"
                     /name="hypothetical protein"
     gene            complement(3230..3631)
                     /locus_tag="CTI74_RS29590"
                     /old_locus_tag="CTI74_29395"
     CDS             complement(3230..3631)
                     /locus_tag="CTI74_RS29590"
                     /old_locus_tag="CTI74_29395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310048.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_012579088.1"
                     /translation="MARVSISEAARLTGKSRTTLHRLIKAGDLSTCSGERNAKMVDTSE
                     LLRVFGPFEQPKGEHHSGQVSGQRDTASADQSEQVIRHLKQEIEHLNTLLLSKDSHIDS
                     LKQAMLLLENHQAKLTESPAPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            complement(3631..3822)
                     /locus_tag="CTI74_RS29595"
                     /old_locus_tag="CTI74_29400"
     CDS             complement(3631..3822)
                     /locus_tag="CTI74_RS29595"
                     /old_locus_tag="CTI74_29400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_004187666.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSRLDALQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     Typing          complement(620..834)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="83.562"
                     /coverage="100.0"
                     /evalue="1.62e-49"
     Typing          815..1331
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="85.847"
                     /coverage="87.0"
                     /evalue="5.5e-153"
ORIGIN
        1 ggccctcaga gcatcagtgc tcagtgtaaa ccggtaaggg ggtcggatgt acgaatggtt
       61 cagagaacgg atctgaggtt atcctgtagt tattttgtag tttatctgta gtcatcgcac
      121 taaaacgcag gattaaatca tcaacttttg tagtcttcct gtagtttacc tgtagtctgg
      181 aaaaataatc cgttcatgca agcatgaacg aagcagttaa agacgctttt tcgtcgccga
      241 tgatccttaa cctgcgcaga tcacccagcc agaatgataa ttttttgccc cttaaatggt
      301 catacaccta acgcagccgc gatttttatc gcaactgcat gaattaaatg aaaaaaatgg
      361 agttatttcg tgtattagcg taatacgcaa cgtattacaa tcatctgtaa caacatgaaa
      421 ataaacaaat aacatgtaat accagcgtat tacatgtacg ctggccagcg aaaaagctat
      481 aacgcttccc ggccgacagg cgggccagaa tccaccgggg cgtgcaggtt ctcttcagta
      541 acatgagcca ttaagtcaaa aaggtcatat tcgccgggaa acagagcatc agtcgcatcc
      601 ggttgttcat catactcaga tggcatggtg tgatatccag tagctgaggg gtgttagcgg
      661 gtttcggggc gcagccctga accagtcacg tagcgctagc ggagtgcata ctggctaaat
      721 attttaaacc gaagtggtga tttgccaaag tgcttcatgt ggcaggagtg aaatgaggct
      781 ttccggcgtc aggagaagat gctggttcag gtgatattcc gcttcctcgc tcactgactc
      841 gctgcgctcg gtcgttcggc tgcggcgagc ggtgcaggct tactaatggg gcggaaattt
      901 atttcctggt ggatgccagg aagaaactta acagggatac gataaggccg cggcaaagcc
      961 gtttttccat aggctccgcc cccctgacaa gcatcacgaa atctgacgct caaatcagtg
     1021 gtggcgaaac ccgacaggac tataaagata ccaggcgttt ccccctggtg gctccctctt
     1081 gcgctctcct gttcccgtcc tgcggcatcc gtgtagtggt ggaagcttta cctaaatcac
     1141 cacgccccgt tccgtttaga cagttcgctc caagctgggc tgtatgcaag aaccccccgt
     1201 tcagcccgac cgctgcgcct tttccggtaa ctatcgtctt gagtccaacc cggaaagaca
     1261 cgacttaacg ccactggcag cggccactgg taaacaggat gtgcgagaga tttacgaaga
     1321 gttcttgaag tggtggccag actgaggcta cactaaaagg acagatttgg tgacgtctcg
     1381 cacaagactg ttaccacggt tcagaaactt gccggtttac tgaaccttcg aaaaaccacc
     1441 ctgcaaggtg gttttttcgt ttacatggca agagactacg acgtccaacg tcagatctca
     1501 agaaattatt taaaaataaa tagttaacca atatccttgt gatatttatt atgtttcctt
     1561 tatactcaaa taacatcaat attcaggatt ggaacactca aacaagttaa tacaacgatg
     1621 ttctaggttc atatccctga gacttaaagt ctgactagta tatttccgaa caagatcact
     1681 atcattccgt acttttttaa ataggtttat ttaatgccat acatatacgc aataatacta
     1741 acaacttgtt ttaacacgaa taatattgca agttgttctt cagaattagc aaatttggga
     1801 atgaaagaca atgttgttaa caccttcatt ctgaatgaag aatgcattga attcaaagat
     1861 aaaatcattg caaacaaaga catttatcat aatatatccg ggaaaaacat aatatctgct
     1921 gaatgtgtac ccgtatctat ccccaaatat attttagaca attacagcaa acaacaacga
     1981 taatgaatcc cccctctgca agcagcgggg tatcaacacc aaagatcaaa tacagagtag
     2041 ttcgctccaa gggacgggaa atattgcctt tagagattta ccataacgtc tcatttcacg
     2101 cagatatgaa aaagcccgca caaggcgggc ttcagactca acagatacgg aatcactctg
     2161 tgaaaaactg ctttgccatg gggtgattct gcatgatctc gtcacgttct tccgggtcaa
     2221 agcacccaca gacacccagc agaaccggct ctgtcagcat tccggcacag catcccgtgg
     2281 tgacctgtat tttacctttc cggtcatacc caaaaacggt gtaggtcaca tcatcctcat
     2341 catagacttc atgacagatg gagcatgagt ccgggtattt tttgatgagt gcattaattt
     2401 cttttacctg agcgtcagta gccaaaacat ctccctgagt cactgattat cacaatccgc
     2461 tgactctaac acagactcag gcatccgccg ttgatttacc ataacgtccc attacgcgca
     2521 ccgcgaaaac ggcctcaggg cgttcctgac gggaaaccgg taaaacaggc aacaaaccac
     2581 ccgaaaatcc gccagaaacg cgctggctct gtttttacgg catgcatgag tatgcacgca
     2641 agtgcatagc gcggaaattc acgccattca gccagggtaa gtcctgtttc cggcgttctt
     2701 cctatccgaa aacggtgaac ggggacgcaa tttattgcgt ggccgtgaag cgttgccggc
     2761 gcagccggaa aaccggtttt cagcacgatc aggaatcggg ttcgtcgacg gccggcaatc
     2821 acgttatggc aagtcgccgg acgactcacc agacaattca ccggcgattc gactcgtgac
     2881 ttgactctag agtcgccatg gtcaaaaagc caccaacccg gcaagtcgac tctagagtca
     2941 agtcatcata acgtactgat tatatggcgt gattcacata tgaatcgtgg gcaagtcatc
     3001 ggcgattcgc catagagtcg tccacgactc ggattcacct tacaaaaaat aaaattgcgt
     3061 aatttaaaac agataactga ttgaaaataa aggtctatct gcaaaatttt aattttgcgt
     3121 agtgtgtggg tatttttagt ggtgaggagc gttcagggat ctgacgattt ttgggaaggt
     3181 tcaggaactc cccggaatgg ccggagagca aaatggaagc atggcgggat caggattttt
     3241 tccagaattt ccaccatggc gccggggatt cagttaattt tgcctggtga ttttcaagaa
     3301 ggagcatggc ctgtttcagg ctgtcaatgt gcgaatcctt ggacaaaagt aaggtgttca
     3361 ggtgttcaat ctcctgtttc agatgacgaa tcacctgttc actctggtca gcagaggctg
     3421 tatcacgctg tccagagacc tgtccagaat ggtgttcacc cttcggttgt tcaaagggac
     3481 caaagacacg taaaagctct gaagtatcta ccatttttgc attgcgttca ccgctacagg
     3541 tggacaggtc acctgcttta attaacctgt gcagtgttgt tctactctta cccgtcagtc
     3601 gggcagcctc actaatagac actctggcca tcagttacca tcctgtaatg catccagtct
     3661 cgaggacagt gtacggaaaa gatgctccgc atcatcgtgg agtttctcac aaaggtccgc
     3721 ctcaacatcg agatcaagct cgttaagctt ctccagcagg agcagagact gattctggat
     3781 gaatttagcc atgttcagcg ctgttttctg ttgtttcgtc ataag
//
