LOCUS       NZ_CP024534             3825 bp    DNA     circular CON 18-JUN-2023
DEFINITION  Klebsiella pneumoniae strain INF157 isolate INF157 plasmid unnamed6,
            complete sequence.
ACCESSION   NZ_CP024534
VERSION     NZ_CP024534.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3357077
            Assembly: GCF_002753075.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3825)
  AUTHORS   Gorrie,C.L., Mirceta,M., Wick,R., Judd,L.M., Wyres,K.L.,
            Thomson,N.R., Strugnell,R.A., Pratt,N.F., Garlic,J.S., Watson,K.M.,
            Hunter,P.C., McGloughlin,S.A., Spelman,D.W., Jenney,A.W.J. and
            Holt,K.E.
  TITLE     Antimicrobial resistant Klebsiella pneumoniae carriage and infection
            in specialized geriatric care wards linked to acquisition in the
            referring hospital
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3825)
  AUTHORS   Gorrie,C.L., Mirceta,M., Wick,R., Judd,L.M., Wyres,K.L.,
            Thomson,N.R., Strugnell,R.A., Pratt,N.F., Garlic,J.S., Watson,K.M.,
            Hunter,P.C., McGloughlin,S.A., Spelman,D.W., Jenney,A.W.J. and
            Holt,K.E.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2017) Biochemistry and Molecular Biology,
            University of Melbourne, Flemington Road, Parkville, Victoria 3052,
            Australia
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 09-AUG-2017
            Assembly Method                   :: Unicycler v. 0.4.0
            Assembly Name                     :: INF157
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 120x
            Sequencing Technology             :: Illumina HiSeq and ONT
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/18/2023 11:16:44
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,728
            CDSs (total)                      :: 5,605
            Genes (coding)                    :: 5,446
            CDSs (with protein)               :: 5,446
            Genes (RNA)                       :: 123
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 159
            CDSs (without protein)            :: 159
            Pseudo Genes (ambiguous residues) :: 0 of 159
            Pseudo Genes (frameshifted)       :: 50 of 159
            Pseudo Genes (incomplete)         :: 108 of 159
            Pseudo Genes (internal stop)      :: 16 of 159
            Pseudo Genes (multiple problems)  :: 15 of 159
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP024534.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3825
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="INF157"
                     /isolate="INF157"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="unnamed6"
                     /geo_loc_name="Australia"
                     /collection_date="2013-08"
     gene            complement(477..878)
                     /locus_tag="CTI61_RS29795"
                     /old_locus_tag="CTI61_29590"
     CDS             complement(477..878)
                     /locus_tag="CTI61_RS29795"
                     /old_locus_tag="CTI61_29590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310048.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_012579088.1"
                     /translation="MARVSISEAARLTGKSRTTLHRLIKAGDLSTCSGERNAKMVDTSE
                     LLRVFGPFEQPKGEHHSGQVSGQRDTASADQSEQVIRHLKQEIEHLNTLLLSKDSHIDS
                     LKQAMLLLENHQAKLTESPAPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            complement(878..1069)
                     /locus_tag="CTI61_RS29800"
                     /old_locus_tag="CTI61_29595"
     CDS             complement(878..1069)
                     /locus_tag="CTI61_RS29800"
                     /old_locus_tag="CTI61_29595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_004187666.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSRLDALQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(3225..3497)
                     /locus_tag="CTI61_RS29815"
                     /old_locus_tag="CTI61_29610"
     CDS             complement(3225..3497)
                     /locus_tag="CTI61_RS29815"
                     /old_locus_tag="CTI61_29610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004897311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_019405140.1"
                     /translation="MATDAQVKEINALIKKYPDSCSICHEVYDEDDVTYTVFGYDRKGK
                     IQVTTGCCAGMLTEPVLLGVCGCFDPEERDEIMQNHPMAKQFFTE"
                     /name="hypothetical protein"
     Typing          complement(1692..1906)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="83.562"
                     /coverage="100.0"
                     /evalue="1.62e-49"
     Typing          1887..2403
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="85.847"
                     /coverage="87.0"
                     /evalue="5.5e-153"
ORIGIN
        1 tgccggcgca gccggaaaac cggttttcag cacgatcagg aatcgggttc gtcgacggcc
       61 ggcaatcacg ttatggcaag tcgccggacg actcaccaga caattcaccg gcgattcgac
      121 tcgtgacttg actctagagt cgccatggtc aaaaagccac caacccggca agtcgactct
      181 agagtcaagt catcataacg tactgattat atggcgtgat tcacatatga atcgtgggca
      241 agtcatcggc gattcgccat agagtcgtcc acgactcgga ttcaccttac aaaaaataaa
      301 attgcgtaat ttaaaacaga taactgattg aaaataaagg tctatctgca aaattttaat
      361 tttgcgtagt gtgtgggtat ttttagtggt gaggagcgtt cagggatctg acgatttttg
      421 ggaaggttca ggaactcccc ggaatggccg gagagcaaaa tggaagcatg gcgggatcag
      481 gattttttcc agaatttcca ccatggcgcc ggggattcag ttaattttgc ctggtgattt
      541 tcaagaagga gcatggcctg tttcaggctg tcaatgtgcg aatccttgga caaaagtaag
      601 gtgttcaggt gttcaatctc ctgtttcaga tgacgaatca cctgttcact ctggtcagca
      661 gaggctgtat cacgctgtcc agagacctgt ccagaatggt gttcaccctt cggttgttca
      721 aagggaccaa agacacgtaa aagctctgaa gtatctacca tttttgcatt gcgttcaccg
      781 ctacaggtgg acaggtcacc tgctttaatt aacctgtgca gtgttgttct actcttaccc
      841 gtcagtcggg cagcctcact aatagacact ctggccatca gttaccatcc tgtaatgcat
      901 ccagtctcga ggacagtgta cggaaaagat gctccgcatc atcgtggagt ttctcacaaa
      961 ggtccgcctc aacatcgaga tcaagctcgt taagcttctc cagcaggagc agagactgat
     1021 tctggatgaa tttagccatg ttcagcgctg ttttctgttg tttcgtcata agggccctca
     1081 gagcatcagt gctcagtgta aaccggtaag ggggtcggat gtacgaatgg ttcagagaac
     1141 ggatctgagg ttatcctgta gttattttgt agtttatctg tagtcatcgc actaaaacgc
     1201 aggattaaat catcaacttt tgtagtcttc ctgtagttta cctgtagtct ggaaaaataa
     1261 tccgttcatg caagcatgaa cgaagcagtt aaagacgctt tttcgtcgcc gatgatcctt
     1321 aacctgcgca gatcacccag ccagaatgat aattttttgc cccttaaatg gtcatacacc
     1381 taacgcagcc gcgattttta tcgcaactgc atgaattaaa tgaaaaaaat ggagttattt
     1441 cgtgtattag cgtaatacgc aacgtattac aatcatctgt aacaacatga aaataaacaa
     1501 ataacatgta ataccagcgt attacatgta cgctggccag cgaaaaagct ataacgcttc
     1561 ccggccgaca ggcgggccag aatccaccgg ggcgtgcagg ttctcttcag taacatgagc
     1621 cattaagtca aaaaggtcat attcgccggg aaacagagca tcagtcgcat ccggttgttc
     1681 atcatactca gatggcatgg tgtgatatcc agtagctgag gggtgttagc gggtttcggg
     1741 gcgcagccct gaaccagtca cgtagcgcta gcggagtgca tactggctaa atattttaaa
     1801 ccgaagtggt gatttgccaa agtgcttcat gtggcaggag tgaaatgagg ctttccggcg
     1861 tcaggagaag atgctggttc aggtgatatt ccgcttcctc gctcactgac tcgctgcgct
     1921 cggtcgttcg gctgcggcga gcggtgcagg cttactaatg gggcggaaat ttatttcctg
     1981 gtggatgcca ggaagaaact taacagggat acgataaggc cgcggcaaag ccgtttttcc
     2041 ataggctccg cccccctgac aagcatcacg aaatctgacg ctcaaatcag tggtggcgaa
     2101 acccgacagg actataaaga taccaggcgt ttccccctgg tggctccctc ttgcgctctc
     2161 ctgttcccgt cctgcggcat ccgtgtagtg gtggaagctt tacctaaatc accacgcccc
     2221 gttccgttta gacagttcgc tccaagctgg gctgtatgca agaacccccc gttcagcccg
     2281 accgctgcgc cttttccggt aactatcgtc ttgagtccaa cccggaaaga cacgacttaa
     2341 cgccactggc agcggccact ggtaaacagg atgtgcgaga gatttacgaa gagttcttga
     2401 agtggtggcc agactgaggc tacactaaaa ggacagattt ggtgacgtct cgcacaagac
     2461 tgttaccacg gttcagaaac ttgccggttt actgaacctt cgaaaaacca ccctgcaagg
     2521 tggttttttc gtttacatgg caagagacta cgacgtccaa cgtcagatct caagaaatta
     2581 tttaaaaata aatagttaac caatatcctt gtgatattta ttatgtttcc tttatactca
     2641 aataacatca atattcagga ttggaacact caaacaagtt aatacaacga tgttctaggt
     2701 tcatatccct gagacttaaa gtctgactag tatatttccg aacaagatca ctatcattcc
     2761 gtactttttt aaataggttt atttaatgcc atacatatac gcaataatac taacaacttg
     2821 ttttaacacg aataatattg caagttgttc ttcagaatta gcaaatttgg gaatgaaaga
     2881 caatgttgtt aacaccttca ttctgaatga agaatgcatt gaattcaaag ataaaatcat
     2941 tgcaaacaaa gacatttatc ataatatatc cgggaaaaac ataatatctg ctgaatgtgt
     3001 acccgtatct atccccaaat atattttaga caattacagc aaacaacaac gataatgaat
     3061 cccccctctg caagcagcgg ggtatcaaca ccaaagatca aatacagagt agttcgctcc
     3121 aagggacggg aaatattgcc tttagagatt taccataacg tctcatttca cgcagatatg
     3181 aaaaagcccg cacaaggcgg gcttcagact caacagatac ggaatcactc tgtgaaaaac
     3241 tgctttgcca tggggtgatt ctgcatgatc tcgtcacgtt cttccgggtc aaagcaccca
     3301 cagacaccca gcagaaccgg ctctgtcagc attccggcac agcatcccgt ggtgacctgt
     3361 attttacctt tccggtcata cccaaaaacg gtgtaggtca catcatcctc atcatagact
     3421 tcatgacaga tggagcatga gtccgggtat tttttgatga gtgcattaat ttcttttacc
     3481 tgagcgtcag tagccaaaac atctccctga gtcactgatt atcacaatcc gctgactcta
     3541 acacagactc aggcatccgc cgttgattta ccataacgtc ccattacgcg caccgcgaaa
     3601 acggcctcag ggcgttcctg acgggaaacc ggtaaaacag gcaacaaacc acccgaaaat
     3661 ccgccagaaa cgcgctggct ctgtttttac ggcatgcatg agtatgcacg caagtgcata
     3721 gcgcggaaat tcacgccatt cagccagggt aagtcctgtt tccggcgttc ttcctatccg
     3781 aaaacggtga acggggacgc aatttattgc gtggccgtga agcgt
//
