LOCUS       NZ_CP024436             2056 bp    DNA     circular CON 08-MAY-2024
DEFINITION  Klebsiella pneumoniae strain DA48896 plasmid p48896_7, complete
            sequence.
ACCESSION   NZ_CP024436
VERSION     NZ_CP024436.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05908511
            Assembly: GCF_003006175.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2056)
  AUTHORS   Nahid,F., Zahra,R. and Sandegren,L.
  TITLE     A blaOXA-181-harbouring multi-resistant ST147 Klebsiella pneumoniae
            isolate from Pakistan that represent an intermediate stage towards
            pan-drug resistance
  JOURNAL   PLoS One 12 (12), e0189438 (2017)
   PUBMED   29220374
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2056)
  AUTHORS   Sandegren,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2017) Medical Biochemistry and Microbiology,
            Uppsala University, Husargatan 3, Uppsala SE-75123, Sweden
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2017
            Assembly Method                   :: CLC Genomics Workbench v. 10
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 50.0x
            Sequencing Technology             :: Illumina MiSeq; PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003006175.1-RS_2024_05_07
            Annotation Date                   :: 05/07/2024 03:49:45
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,698
            CDSs (total)                      :: 5,575
            Genes (coding)                    :: 5,435
            CDSs (with protein)               :: 5,435
            Genes (RNA)                       :: 123
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 140
            CDSs (without protein)            :: 140
            Pseudo Genes (ambiguous residues) :: 0 of 140
            Pseudo Genes (frameshifted)       :: 55 of 140
            Pseudo Genes (incomplete)         :: 88 of 140
            Pseudo Genes (internal stop)      :: 19 of 140
            Pseudo Genes (multiple problems)  :: 20 of 140
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP024436.1.
            Bacteria and source DNA available from Linus Sandegren, Dep. of
            Medical Biochemistry and Microbiology, Husargatan 3, Box 582,
            SE-75123 Uppsala.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2056
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="DA48896"
                     /isolation_source="Trachaeal secretion"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="p48896_7"
                     /geo_loc_name="Pakistan"
                     /lat_lon="29.53522956 N 68.5546895 E"
                     /collection_date="2015-06"
                     /collected_by="Fouzia Nahid"
     gene            1..990
                     /locus_tag="BKL84_RS29260"
                     /old_locus_tag="BKL84_29145"
     CDS             1..990
                     /locus_tag="BKL84_RS29260"
                     /old_locus_tag="BKL84_29145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001529700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_023569045.1"
                     /translation="MKNPELQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MASCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDSRWMFLTLTVRNCAIGELGDTLSRMNTAFQRLKDRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVKHARWVELWRECLRVSYDPNVDVRAVKPRKPKDG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPEWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVRKYRRSPTKDKTESE"
                     /name="protein rep"
     gene            1543..1734
                     /locus_tag="BKL84_RS29265"
                     /old_locus_tag="BKL84_29150"
     CDS             1543..1734
                     /locus_tag="BKL84_RS29265"
                     /old_locus_tag="BKL84_29150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020324555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_020324555.1"
                     /translation="MIVRLDNRLFEILDEMGAHVDREMFMAAYAQRKAEKENDPRHIRQ
                     RKLTRLAHDLMSESDPEL"
                     /name="hypothetical protein"
     Typing          complement(719..908)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="97.906"
                     /coverage="99.0"
                     /evalue="1.72e-88"
ORIGIN
        1 atgaaaaacc ctgaactcca gaacctcacg gactattccc cctcagatgc gccctgggac
       61 gctcacagaa gcgtttctga cgacgtggga gggatttacc tgcttgcggc cgaatatgag
      121 cgctacgggg cgcgtatggc ctcctgcggc ggtttactgc gtttcgggtg gtctaccctc
      181 aaagaaaccg gagaaacgcg cctgaggctg cgtgaggcgc atttctgccg tgtccggcac
      241 tgtcctgtct gccagtggag gcgctccctg atgtggcaag cccgtttcta ccagtccctg
      301 ccgcgtatcg tggcggatta ccccgattcc cgctggatgt tcctgaccct gaccgtgcgc
      361 aactgtgcga tcggggagct gggcgatacg ctgagccgga tgaacacggc tttccagcgg
      421 ctgaaggatc gcaaagagtt cagaccagtt cagggatgga tccgcaccac ggaagtcacc
      481 cgcggcagtg acggcagcgc acacccgcac ttccacacac tgatgatggt tccgcctggc
      541 atgcttaacg ggaagagtta cgtcaaacat gcgcgctggg ttgagctgtg gcgggagtgc
      601 cttcgggtca gctacgatcc gaatgtcgat gtccgggcag tgaaaccccg gaagccgaag
      661 gacggcgaat cgctggcctg cgcgaccgcc gaactggtgc gcggcgcggt ggccgagacc
      721 ctgaaatatt ccacgaagcc ggccgacatg gtcgccgatc ctgaatggtt cctcgaactg
      781 acccgccaga cgcacaagcg ccgctttgtg gcgaccggcg gcgcactcaa agacgtattg
      841 aaactcgatc aggaaaccga cgccgacatg gtgatcgggg atgatatttc cgagggcgac
      901 gatgacggtt cacgcatcgc gttcgagtgg aaaaccgagg tcagaaaata ccgtcgctca
      961 ccaacgaaag ataaaaccga atcagagtaa cggggtgtcg gggctgcgcc ctgaccatga
     1021 ggactttggg catccgtcac cttggtggcg gtgtaccaaa gtcacatctt gtccgattga
     1081 ttttactccg atgcaggata gggctgccgc cgcaaagtga cgtcactcga ttgctgagtt
     1141 cggattccga acctgggttt tccttccggt aattttccgg aaggcgcgct tagtagtttc
     1201 tccccttcgg tgagaaactg cgcggtgggg caagcccacg aaaaacaaaa actgacaccg
     1261 gacaagatgt gtttttggag taccgccatc acgatgtcgg taccaaaaac gatccgtcag
     1321 ggctgcgccc cgacaccctg ccaacacctc acgccgccag attaaaatct gtcagcgttc
     1381 gccgttcccg aaatcgtcaa acgctaaatc gcggggtccc gctggcttgc cagtgggttc
     1441 cgatttagtg attgacgaca gcacccgtag aatacttaca gggggtggtt gtgatcacgc
     1501 agtgagcgca accacctgat aggcgttttt gagggggtag gtatgatcgt cagactggat
     1561 aaccggctgt ttgagattct cgatgagatg ggtgcgcatg tggatcggga aatgttcatg
     1621 gcggcctatg cacagcggaa ggccgaaaag gaaaatgatc cccggcatat ccgtcagcgg
     1681 aaattgacca ggttggctca tgatttgatg tcagaatcgg accctgaatt gtgagcctcg
     1741 cgtgcgcgcg agggaaattg gtcagaaaat cgccggattt tcatgcgcgc gatccttgta
     1801 tttatactta agggataact ctggcgttaa aaataagcct cagcccttgt gcctcaaggg
     1861 tttcagcgtg atttgcctga aaatgacttt gaagttattc tgtcgggagt ggtcgcgtta
     1921 aaagcgaccc ccgcaacgac ggccatcgtt cgggggtgtg accacctgta ggaattctat
     1981 tttgcgacag acaacacagg tgatacggca atgataacac gtcaaatgag ccatcgccca
     2041 gtatgggacg gtgcgc
//
